data_1DL8
#
_entry.id 1DL8
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1DL8 pdb_00001dl8 10.2210/pdb1dl8/pdb
NDB DD0023 ? ?
RCSB RCSB010179 ? ?
WWPDB D_1000010179 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2000-10-30
2 'Structure model' 1 1 2008-04-27
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-07
5 'Structure model' 1 4 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
5 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1DL8
_pdbx_database_status.recvd_initial_deposition_date 1999-12-08
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
NDB DD0015 '9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2' unspecified
NDB DDB074 '6-BR-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CG(5-BRU)ACG)2' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Adams, A.' 1
'Guss, J.M.' 2
'Collyer, C.A.' 3
'Denny, W.A.' 4
'Wakelin, L.P.' 5
#
_citation.id primary
_citation.title
;Acridinecarboxamide topoisomerase poisons: structural and kinetic studies of the DNA complexes of 5-substituted 9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamides.
;
_citation.journal_abbrev Mol.Pharmacol.
_citation.journal_volume 58
_citation.page_first 649
_citation.page_last 658
_citation.year 2000
_citation.journal_id_ASTM MOPMA3
_citation.country US
_citation.journal_id_ISSN 0026-895X
_citation.journal_id_CSD 0197
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 10953060
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Adams, A.' 1 ?
primary 'Guss, J.M.' 2 ?
primary 'Collyer, C.A.' 3 ?
primary 'Denny, W.A.' 4 ?
primary 'Prakash, A.S.' 5 ?
primary 'Wakelin, L.P.' 6 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn '5-FLUORO-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE' 326.368 2 ? ? ? ?
3 water nat water 18.015 22 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 '5-FLUORO-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE' DA7
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DA7 non-polymer . '5-FLUORO-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE' ? 'C18 H19 F N4 O' 326.368
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1001 1001 DC C A . n
A 1 2 DG 2 1002 1002 DG G A . n
A 1 3 DT 3 1003 1003 DT T A . n
A 1 4 DA 4 1004 1004 DA A A . n
A 1 5 DC 5 1005 1005 DC C A . n
A 1 6 DG 6 1006 1006 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DA7 1 3014 3014 DA7 DA7 A .
C 2 DA7 1 3015 3015 DA7 DA7 A .
D 3 HOH 1 4001 4001 HOH HOH A .
D 3 HOH 2 4002 4002 HOH HOH A .
D 3 HOH 3 4003 4003 HOH HOH A .
D 3 HOH 4 4004 4004 HOH HOH A .
D 3 HOH 5 4005 4005 HOH HOH A .
D 3 HOH 6 4006 4006 HOH HOH A .
D 3 HOH 7 4007 4007 HOH HOH A .
D 3 HOH 8 4008 4008 HOH HOH A .
D 3 HOH 9 4009 4009 HOH HOH A .
D 3 HOH 10 4010 4010 HOH HOH A .
D 3 HOH 11 4011 4011 HOH HOH A .
D 3 HOH 12 4012 4012 HOH HOH A .
D 3 HOH 13 4013 4013 HOH HOH A .
D 3 HOH 14 4014 4014 HOH HOH A .
D 3 HOH 15 4015 4015 HOH HOH A .
D 3 HOH 16 4016 4016 HOH HOH A .
D 3 HOH 17 4017 4017 HOH HOH A .
D 3 HOH 18 4018 4018 HOH HOH A .
D 3 HOH 19 4019 4019 HOH HOH A .
D 3 HOH 20 4020 4020 HOH HOH A .
D 3 HOH 21 4021 4021 HOH HOH A .
D 3 HOH 22 4022 4022 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
SHELXL-97 refinement . ? 1
DENZO 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
#
_cell.entry_id 1DL8
_cell.length_a 30.140
_cell.length_b 30.140
_cell.length_c 39.400
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1DL8
_symmetry.space_group_name_H-M 'P 64'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting hexagonal
_symmetry.Int_Tables_number 172
#
_exptl.entry_id 1DL8
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.83
_exptl_crystal.density_percent_sol 56.6
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.pdbx_details 'MPD, SODIUM CACODYLATE, SPERMINE, NACL, MGCL2, pH 6.5, VAPOR DIFFUSION, temperature 291K'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 'SODIUM CACODYLATE' ? ? ?
1 2 1 SPERMINE ? ? ?
1 3 1 NACL ? ? ?
1 4 1 MGCL2 ? ? ?
1 5 1 MPD ? ? ?
1 6 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 110
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS II'
_diffrn_detector.pdbx_collection_date 1998-03-20
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1DL8
_reflns.observed_criterion_sigma_I 0.0
_reflns.observed_criterion_sigma_F 0.0
_reflns.d_resolution_low 50
_reflns.d_resolution_high 1.55
_reflns.number_obs 3006
_reflns.number_all 3022
_reflns.percent_possible_obs 99.5
_reflns.pdbx_Rmerge_I_obs 0.0550000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 36.6
_reflns.B_iso_Wilson_estimate 14.03
_reflns.pdbx_redundancy 9.6
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.55
_reflns_shell.d_res_low 1.61
_reflns_shell.percent_possible_all 97.3
_reflns_shell.Rmerge_I_obs 0.2430000
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy 3.4
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1DL8
_refine.ls_number_reflns_obs 2978
_refine.ls_number_reflns_all 2978
_refine.pdbx_ls_sigma_I 0.0
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 16.0
_refine.ls_d_res_high 1.55
_refine.ls_percent_reflns_obs 99.3
_refine.ls_R_factor_obs 0.2139000
_refine.ls_R_factor_all 0.2159000
_refine.ls_R_factor_R_work 0.2139000
_refine.ls_R_factor_R_free 0.2694000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 8.3
_refine.ls_number_reflns_R_free 248
_refine.ls_number_parameters 755
_refine.ls_number_restraints 1032
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'MOEWS & KRETSINGER: J.MOL.BIOL. 91(1973) 201-228'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method 'FREE R'
_refine.details ?
_refine.pdbx_starting_model 'NDB ID DD0015'
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 1DL8
_refine_analyze.Luzzati_coordinate_error_obs ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues 1
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen 174.38
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 48
_refine_hist.number_atoms_solvent 22
_refine_hist.number_atoms_total 190
_refine_hist.d_res_high 1.55
_refine_hist.d_res_low 16.0
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.entry_id 1DL8
_pdbx_refine.R_factor_all_no_cutoff ?
_pdbx_refine.R_factor_obs_no_cutoff ?
_pdbx_refine.free_R_factor_no_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ?
_pdbx_refine.free_R_val_test_set_ct_no_cutoff ?
_pdbx_refine.R_factor_all_4sig_cutoff 0.2089000
_pdbx_refine.R_factor_obs_4sig_cutoff 0.2072000
_pdbx_refine.free_R_factor_4sig_cutoff 0.2615000
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 8.3
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 227
_pdbx_refine.number_reflns_obs_4sig_cutoff 2720
_pdbx_refine.number_reflns_obs_no_cutoff ?
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.free_R_error_no_cutoff ?
#
_database_PDB_matrix.entry_id 1DL8
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1DL8
_struct.title
'CRYSTAL STRUCTURE OF 5-F-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1DL8
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'INTERCALATION, DNA, ACRIDINE'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1DL8
_struct_ref.pdbx_db_accession 1DL8
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1DL8
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1DL8
_struct_ref_seq.db_align_beg 1001
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 1006
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1001
_struct_ref_seq.pdbx_auth_seq_align_end 1006
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 30.1400000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DA7 3014 ? 10 'BINDING SITE FOR RESIDUE DA7 A 3014'
AC2 Software A DA7 3015 ? 8 'BINDING SITE FOR RESIDUE DA7 A 3015'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 10 DC A 1 ? DC A 1001 . ? 1_555 ?
2 AC1 10 DG A 2 ? DG A 1002 . ? 1_555 ?
3 AC1 10 DG A 2 ? DG A 1002 . ? 3_664 ?
4 AC1 10 DA A 4 ? DA A 1004 . ? 2_655 ?
5 AC1 10 DA A 4 ? DA A 1004 . ? 4_655 ?
6 AC1 10 DC A 5 ? DC A 1005 . ? 4_655 ?
7 AC1 10 DG A 6 ? DG A 1006 . ? 4_655 ?
8 AC1 10 DA7 C . ? DA7 A 3015 . ? 4_655 ?
9 AC1 10 HOH D . ? HOH A 4007 . ? 1_555 ?
10 AC1 10 HOH D . ? HOH A 4014 . ? 1_555 ?
11 AC2 8 DC A 1 ? DC A 1001 . ? 1_445 ?
12 AC2 8 DC A 1 ? DC A 1001 . ? 4_655 ?
13 AC2 8 DC A 5 ? DC A 1005 . ? 5_555 ?
14 AC2 8 DG A 6 ? DG A 1006 . ? 1_555 ?
15 AC2 8 DG A 6 ? DG A 1006 . ? 4_545 ?
16 AC2 8 DA7 B . ? DA7 A 3014 . ? 4_655 ?
17 AC2 8 HOH D . ? HOH A 4018 . ? 2_545 ?
18 AC2 8 HOH D . ? HOH A 4018 . ? 5_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C5'" A DC 1001 ? ? "C4'" A DC 1001 ? ? 1.598 1.512 0.086 0.007 N
2 1 "C3'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 1.612 1.518 0.094 0.012 N
3 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 1.549 1.420 0.129 0.011 N
4 1 "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? 1.619 1.512 0.107 0.007 N
5 1 "C3'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 1.597 1.518 0.079 0.012 N
6 1 "C2'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.590 1.519 0.071 0.010 N
7 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.534 1.420 0.114 0.011 N
8 1 "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? ? 1.623 1.512 0.111 0.007 N
9 1 "C2'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 1.594 1.519 0.075 0.010 N
10 1 "O4'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 1.544 1.420 0.124 0.011 N
11 1 "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 1.627 1.512 0.115 0.007 N
12 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? 1.534 1.420 0.114 0.011 N
13 1 "C5'" A DC 1005 ? ? "C4'" A DC 1005 ? ? 1.620 1.512 0.108 0.007 N
14 1 "C3'" A DC 1005 ? ? "C2'" A DC 1005 ? ? 1.594 1.518 0.076 0.012 N
15 1 "C2'" A DC 1005 ? ? "C1'" A DC 1005 ? ? 1.610 1.519 0.091 0.010 N
16 1 "O4'" A DC 1005 ? ? "C1'" A DC 1005 ? ? 1.510 1.420 0.090 0.011 N
17 1 "C5'" A DG 1006 ? ? "C4'" A DG 1006 ? ? 1.632 1.512 0.120 0.007 N
18 1 "C3'" A DG 1006 ? ? "C2'" A DG 1006 ? ? 1.590 1.518 0.072 0.012 N
19 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? 1.524 1.420 0.104 0.011 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A DC 1001 ? ? "C5'" A DC 1001 ? ? "C4'" A DC 1001 ? ? 103.30 109.40 -6.10 0.80 N
2 1 "O4'" A DC 1001 ? ? "C4'" A DC 1001 ? ? "C3'" A DC 1001 ? ? 112.40 106.00 6.40 0.60 N
3 1 "C4'" A DC 1001 ? ? "C3'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 93.39 102.20 -8.81 0.70 N
4 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 100.01 105.90 -5.89 0.80 N
5 1 N1 A DC 1001 ? ? "C1'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 126.60 114.30 12.30 1.40 N
6 1 "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? 103.96 109.40 -5.44 0.80 N
7 1 "O4'" A DG 1002 ? ? "C4'" A DG 1002 ? ? "C3'" A DG 1002 ? ? 110.89 106.00 4.89 0.60 N
8 1 "C4'" A DG 1002 ? ? "C3'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 94.60 102.20 -7.60 0.70 N
9 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 99.54 105.90 -6.36 0.80 N
10 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? N9 A DG 1002 ? ? 100.21 108.00 -7.79 0.70 N
11 1 C6 A DG 1002 ? ? N1 A DG 1002 ? ? C2 A DG 1002 ? ? 120.72 125.10 -4.38 0.60 N
12 1 "C3'" A DG 1002 ? ? "O3'" A DG 1002 ? ? P A DT 1003 ? ? 111.25 119.70 -8.45 1.20 Y
13 1 "O5'" A DT 1003 ? ? "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? ? 98.12 109.40 -11.28 0.80 N
14 1 "O4'" A DT 1003 ? ? "C4'" A DT 1003 ? ? "C3'" A DT 1003 ? ? 112.32 106.00 6.32 0.60 N
15 1 "C4'" A DT 1003 ? ? "C3'" A DT 1003 ? ? "C2'" A DT 1003 ? ? 97.00 102.20 -5.20 0.70 N
16 1 "O4'" A DT 1003 ? ? "C1'" A DT 1003 ? ? "C2'" A DT 1003 ? ? 98.30 105.90 -7.60 0.80 N
17 1 C2 A DT 1003 ? ? N3 A DT 1003 ? ? C4 A DT 1003 ? ? 131.26 127.20 4.06 0.60 N
18 1 N3 A DT 1003 ? ? C2 A DT 1003 ? ? O2 A DT 1003 ? ? 127.63 122.30 5.33 0.60 N
19 1 "O5'" A DA 1004 ? ? "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 101.21 109.40 -8.19 0.80 N
20 1 "O4'" A DA 1004 ? ? "C4'" A DA 1004 ? ? "C3'" A DA 1004 ? ? 114.41 106.00 8.41 0.60 N
21 1 "C4'" A DA 1004 ? ? "C3'" A DA 1004 ? ? "C2'" A DA 1004 ? ? 96.76 102.20 -5.44 0.70 N
22 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? "C2'" A DA 1004 ? ? 100.46 105.90 -5.44 0.80 N
23 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? N9 A DA 1004 ? ? 99.96 108.00 -8.04 0.70 N
24 1 N7 A DA 1004 ? ? C8 A DA 1004 ? ? N9 A DA 1004 ? ? 110.65 113.80 -3.15 0.50 N
25 1 "O5'" A DC 1005 ? ? "C5'" A DC 1005 ? ? "C4'" A DC 1005 ? ? 101.98 109.40 -7.42 0.80 N
26 1 "O4'" A DC 1005 ? ? "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? 112.74 106.00 6.74 0.60 N
27 1 "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? "C2'" A DC 1005 ? ? 97.36 102.20 -4.84 0.70 N
28 1 "O4'" A DC 1005 ? ? "C1'" A DC 1005 ? ? "C2'" A DC 1005 ? ? 97.94 105.90 -7.96 0.80 N
29 1 "O4'" A DC 1005 ? ? "C1'" A DC 1005 ? ? N1 A DC 1005 ? ? 112.89 108.30 4.59 0.30 N
30 1 C6 A DC 1005 ? ? N1 A DC 1005 ? ? C2 A DC 1005 ? ? 125.71 120.30 5.41 0.40 N
31 1 N3 A DC 1005 ? ? C4 A DC 1005 ? ? C5 A DC 1005 ? ? 126.21 121.90 4.31 0.40 N
32 1 C5 A DC 1005 ? ? C6 A DC 1005 ? ? N1 A DC 1005 ? ? 116.64 121.00 -4.36 0.50 N
33 1 C5 A DC 1005 ? ? C4 A DC 1005 ? ? N4 A DC 1005 ? ? 115.04 120.20 -5.16 0.70 N
34 1 "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? "C4'" A DG 1006 ? ? 104.37 109.40 -5.03 0.80 N
35 1 P A DG 1006 ? ? "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? 108.64 120.90 -12.26 1.60 N
36 1 "O4'" A DG 1006 ? ? "C4'" A DG 1006 ? ? "C3'" A DG 1006 ? ? 111.85 106.00 5.85 0.60 N
37 1 "C4'" A DG 1006 ? ? "C3'" A DG 1006 ? ? "C2'" A DG 1006 ? ? 96.49 102.20 -5.71 0.70 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DA7 C8 C Y N 37
DA7 C7 C Y N 38
DA7 C6 C Y N 39
DA7 C5 C Y N 40
DA7 F F N N 41
DA7 N10 N Y N 42
DA7 C4 C Y N 43
DA7 C3 C Y N 44
DA7 C2 C Y N 45
DA7 C1 C Y N 46
DA7 C13 C Y N 47
DA7 C14 C Y N 48
DA7 C12 C Y N 49
DA7 C11 C Y N 50
DA7 C9 C Y N 51
DA7 N9 N N N 52
DA7 C15 C N N 53
DA7 O15 O N N 54
DA7 N16 N N N 55
DA7 C17 C N N 56
DA7 C18 C N N 57
DA7 N19 N N N 58
DA7 C20 C N N 59
DA7 C21 C N N 60
DA7 H8 H N N 61
DA7 H7 H N N 62
DA7 H6 H N N 63
DA7 H3 H N N 64
DA7 H2 H N N 65
DA7 H1 H N N 66
DA7 HN91 H N N 67
DA7 HN92 H N N 68
DA7 H16 H N N 69
DA7 H171 H N N 70
DA7 H172 H N N 71
DA7 H181 H N N 72
DA7 H182 H N N 73
DA7 H201 H N N 74
DA7 H202 H N N 75
DA7 H203 H N N 76
DA7 H211 H N N 77
DA7 H212 H N N 78
DA7 H213 H N N 79
DC OP3 O N N 80
DC P P N N 81
DC OP1 O N N 82
DC OP2 O N N 83
DC "O5'" O N N 84
DC "C5'" C N N 85
DC "C4'" C N R 86
DC "O4'" O N N 87
DC "C3'" C N S 88
DC "O3'" O N N 89
DC "C2'" C N N 90
DC "C1'" C N R 91
DC N1 N N N 92
DC C2 C N N 93
DC O2 O N N 94
DC N3 N N N 95
DC C4 C N N 96
DC N4 N N N 97
DC C5 C N N 98
DC C6 C N N 99
DC HOP3 H N N 100
DC HOP2 H N N 101
DC "H5'" H N N 102
DC "H5''" H N N 103
DC "H4'" H N N 104
DC "H3'" H N N 105
DC "HO3'" H N N 106
DC "H2'" H N N 107
DC "H2''" H N N 108
DC "H1'" H N N 109
DC H41 H N N 110
DC H42 H N N 111
DC H5 H N N 112
DC H6 H N N 113
DG OP3 O N N 114
DG P P N N 115
DG OP1 O N N 116
DG OP2 O N N 117
DG "O5'" O N N 118
DG "C5'" C N N 119
DG "C4'" C N R 120
DG "O4'" O N N 121
DG "C3'" C N S 122
DG "O3'" O N N 123
DG "C2'" C N N 124
DG "C1'" C N R 125
DG N9 N Y N 126
DG C8 C Y N 127
DG N7 N Y N 128
DG C5 C Y N 129
DG C6 C N N 130
DG O6 O N N 131
DG N1 N N N 132
DG C2 C N N 133
DG N2 N N N 134
DG N3 N N N 135
DG C4 C Y N 136
DG HOP3 H N N 137
DG HOP2 H N N 138
DG "H5'" H N N 139
DG "H5''" H N N 140
DG "H4'" H N N 141
DG "H3'" H N N 142
DG "HO3'" H N N 143
DG "H2'" H N N 144
DG "H2''" H N N 145
DG "H1'" H N N 146
DG H8 H N N 147
DG H1 H N N 148
DG H21 H N N 149
DG H22 H N N 150
DT OP3 O N N 151
DT P P N N 152
DT OP1 O N N 153
DT OP2 O N N 154
DT "O5'" O N N 155
DT "C5'" C N N 156
DT "C4'" C N R 157
DT "O4'" O N N 158
DT "C3'" C N S 159
DT "O3'" O N N 160
DT "C2'" C N N 161
DT "C1'" C N R 162
DT N1 N N N 163
DT C2 C N N 164
DT O2 O N N 165
DT N3 N N N 166
DT C4 C N N 167
DT O4 O N N 168
DT C5 C N N 169
DT C7 C N N 170
DT C6 C N N 171
DT HOP3 H N N 172
DT HOP2 H N N 173
DT "H5'" H N N 174
DT "H5''" H N N 175
DT "H4'" H N N 176
DT "H3'" H N N 177
DT "HO3'" H N N 178
DT "H2'" H N N 179
DT "H2''" H N N 180
DT "H1'" H N N 181
DT H3 H N N 182
DT H71 H N N 183
DT H72 H N N 184
DT H73 H N N 185
DT H6 H N N 186
HOH O O N N 187
HOH H1 H N N 188
HOH H2 H N N 189
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DA7 C8 C7 doub Y N 39
DA7 C8 C13 sing Y N 40
DA7 C8 H8 sing N N 41
DA7 C7 C6 sing Y N 42
DA7 C7 H7 sing N N 43
DA7 C6 C5 doub Y N 44
DA7 C6 H6 sing N N 45
DA7 C5 F sing N N 46
DA7 C5 C14 sing Y N 47
DA7 N10 C14 doub Y N 48
DA7 N10 C12 sing Y N 49
DA7 C4 C3 doub Y N 50
DA7 C4 C12 sing Y N 51
DA7 C4 C15 sing N N 52
DA7 C3 C2 sing Y N 53
DA7 C3 H3 sing N N 54
DA7 C2 C1 doub Y N 55
DA7 C2 H2 sing N N 56
DA7 C1 C11 sing Y N 57
DA7 C1 H1 sing N N 58
DA7 C13 C14 sing Y N 59
DA7 C13 C9 doub Y N 60
DA7 C12 C11 doub Y N 61
DA7 C11 C9 sing Y N 62
DA7 C9 N9 sing N N 63
DA7 N9 HN91 sing N N 64
DA7 N9 HN92 sing N N 65
DA7 C15 O15 doub N N 66
DA7 C15 N16 sing N N 67
DA7 N16 C17 sing N N 68
DA7 N16 H16 sing N N 69
DA7 C17 C18 sing N N 70
DA7 C17 H171 sing N N 71
DA7 C17 H172 sing N N 72
DA7 C18 N19 sing N N 73
DA7 C18 H181 sing N N 74
DA7 C18 H182 sing N N 75
DA7 N19 C20 sing N N 76
DA7 N19 C21 sing N N 77
DA7 C20 H201 sing N N 78
DA7 C20 H202 sing N N 79
DA7 C20 H203 sing N N 80
DA7 C21 H211 sing N N 81
DA7 C21 H212 sing N N 82
DA7 C21 H213 sing N N 83
DC OP3 P sing N N 84
DC OP3 HOP3 sing N N 85
DC P OP1 doub N N 86
DC P OP2 sing N N 87
DC P "O5'" sing N N 88
DC OP2 HOP2 sing N N 89
DC "O5'" "C5'" sing N N 90
DC "C5'" "C4'" sing N N 91
DC "C5'" "H5'" sing N N 92
DC "C5'" "H5''" sing N N 93
DC "C4'" "O4'" sing N N 94
DC "C4'" "C3'" sing N N 95
DC "C4'" "H4'" sing N N 96
DC "O4'" "C1'" sing N N 97
DC "C3'" "O3'" sing N N 98
DC "C3'" "C2'" sing N N 99
DC "C3'" "H3'" sing N N 100
DC "O3'" "HO3'" sing N N 101
DC "C2'" "C1'" sing N N 102
DC "C2'" "H2'" sing N N 103
DC "C2'" "H2''" sing N N 104
DC "C1'" N1 sing N N 105
DC "C1'" "H1'" sing N N 106
DC N1 C2 sing N N 107
DC N1 C6 sing N N 108
DC C2 O2 doub N N 109
DC C2 N3 sing N N 110
DC N3 C4 doub N N 111
DC C4 N4 sing N N 112
DC C4 C5 sing N N 113
DC N4 H41 sing N N 114
DC N4 H42 sing N N 115
DC C5 C6 doub N N 116
DC C5 H5 sing N N 117
DC C6 H6 sing N N 118
DG OP3 P sing N N 119
DG OP3 HOP3 sing N N 120
DG P OP1 doub N N 121
DG P OP2 sing N N 122
DG P "O5'" sing N N 123
DG OP2 HOP2 sing N N 124
DG "O5'" "C5'" sing N N 125
DG "C5'" "C4'" sing N N 126
DG "C5'" "H5'" sing N N 127
DG "C5'" "H5''" sing N N 128
DG "C4'" "O4'" sing N N 129
DG "C4'" "C3'" sing N N 130
DG "C4'" "H4'" sing N N 131
DG "O4'" "C1'" sing N N 132
DG "C3'" "O3'" sing N N 133
DG "C3'" "C2'" sing N N 134
DG "C3'" "H3'" sing N N 135
DG "O3'" "HO3'" sing N N 136
DG "C2'" "C1'" sing N N 137
DG "C2'" "H2'" sing N N 138
DG "C2'" "H2''" sing N N 139
DG "C1'" N9 sing N N 140
DG "C1'" "H1'" sing N N 141
DG N9 C8 sing Y N 142
DG N9 C4 sing Y N 143
DG C8 N7 doub Y N 144
DG C8 H8 sing N N 145
DG N7 C5 sing Y N 146
DG C5 C6 sing N N 147
DG C5 C4 doub Y N 148
DG C6 O6 doub N N 149
DG C6 N1 sing N N 150
DG N1 C2 sing N N 151
DG N1 H1 sing N N 152
DG C2 N2 sing N N 153
DG C2 N3 doub N N 154
DG N2 H21 sing N N 155
DG N2 H22 sing N N 156
DG N3 C4 sing N N 157
DT OP3 P sing N N 158
DT OP3 HOP3 sing N N 159
DT P OP1 doub N N 160
DT P OP2 sing N N 161
DT P "O5'" sing N N 162
DT OP2 HOP2 sing N N 163
DT "O5'" "C5'" sing N N 164
DT "C5'" "C4'" sing N N 165
DT "C5'" "H5'" sing N N 166
DT "C5'" "H5''" sing N N 167
DT "C4'" "O4'" sing N N 168
DT "C4'" "C3'" sing N N 169
DT "C4'" "H4'" sing N N 170
DT "O4'" "C1'" sing N N 171
DT "C3'" "O3'" sing N N 172
DT "C3'" "C2'" sing N N 173
DT "C3'" "H3'" sing N N 174
DT "O3'" "HO3'" sing N N 175
DT "C2'" "C1'" sing N N 176
DT "C2'" "H2'" sing N N 177
DT "C2'" "H2''" sing N N 178
DT "C1'" N1 sing N N 179
DT "C1'" "H1'" sing N N 180
DT N1 C2 sing N N 181
DT N1 C6 sing N N 182
DT C2 O2 doub N N 183
DT C2 N3 sing N N 184
DT N3 C4 sing N N 185
DT N3 H3 sing N N 186
DT C4 O4 doub N N 187
DT C4 C5 sing N N 188
DT C5 C7 sing N N 189
DT C5 C6 doub N N 190
DT C7 H71 sing N N 191
DT C7 H72 sing N N 192
DT C7 H73 sing N N 193
DT C6 H6 sing N N 194
HOH O H1 sing N N 195
HOH O H2 sing N N 196
#
_ndb_struct_conf_na.entry_id 1DL8
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 4_655 0.190 -0.197 0.074 1.581 -9.249 -3.193 1 A_DC1001:DG1006_A A 1001 ? A 1006 ? 19 1
1 A DG 2 1_555 A DC 5 4_655 -0.087 -0.136 0.031 -6.807 -5.881 -1.274 2 A_DG1002:DC1005_A A 1002 ? A 1005 ? 19 1
1 A DT 3 1_555 A DA 4 4_655 0.040 -0.209 0.107 1.247 -9.650 -3.376 3 A_DT1003:DA1004_A A 1003 ? A 1004 ? 20 1
1 A DA 4 1_555 A DT 3 4_655 -0.040 -0.209 0.107 -1.247 -9.650 -3.376 4 A_DA1004:DT1003_A A 1004 ? A 1003 ? 20 1
1 A DC 5 1_555 A DG 2 4_655 0.087 -0.136 0.031 6.807 -5.881 -1.274 5 A_DC1005:DG1002_A A 1005 ? A 1002 ? 19 1
1 A DG 6 1_555 A DC 1 4_655 -0.190 -0.197 0.074 -1.581 -9.249 -3.193 6 A_DG1006:DC1001_A A 1006 ? A 1001 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 4_655 A DG 2 1_555 A DC 5 4_655 0.351 0.451 6.846 0.772 4.141 24.429 -1.589 -0.325 6.834 9.693 -1.806
24.784 1 AA_DC1001DG1002:DC1005DG1006_AA A 1001 ? A 1006 ? A 1002 ? A 1005 ?
1 A DG 2 1_555 A DC 5 4_655 A DT 3 1_555 A DA 4 4_655 -0.459 0.056 3.197 -0.643 2.366 26.488 -0.486 0.833 3.200 5.150 1.399
26.599 2 AA_DG1002DT1003:DA1004DC1005_AA A 1002 ? A 1005 ? A 1003 ? A 1004 ?
1 A DT 3 1_555 A DA 4 4_655 A DA 4 1_555 A DT 3 4_655 0.000 1.596 3.233 0.000 -3.672 48.612 2.207 0.000 3.112 -4.453 0.000
48.743 3 AA_DT1003DA1004:DT1003DA1004_AA A 1003 ? A 1004 ? A 1004 ? A 1003 ?
1 A DA 4 1_555 A DT 3 4_655 A DC 5 1_555 A DG 2 4_655 0.459 0.056 3.197 0.643 2.366 26.488 -0.486 -0.833 3.200 5.150 -1.399
26.599 4 AA_DA1004DC1005:DG1002DT1003_AA A 1004 ? A 1003 ? A 1005 ? A 1002 ?
1 A DC 5 1_555 A DG 2 4_655 A DG 6 1_555 A DC 1 4_655 -0.351 0.451 6.846 -0.772 4.141 24.429 -1.590 0.325 6.834 9.693 1.806
24.784 5 AA_DC1005DG1006:DC1001DG1002_AA A 1005 ? A 1002 ? A 1006 ? A 1001 ?
#
_pdbx_initial_refinement_model.accession_code 465D
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details 'NDB ID DD0015'
#
_atom_sites.entry_id 1DL8
_atom_sites.fract_transf_matrix[1][1] 0.033178
_atom_sites.fract_transf_matrix[1][2] 0.019156
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.038311
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.025381
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
F
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 20.233 10.705 27.131 1.00 14.45 ? 1001 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 19.357 11.811 27.329 1.00 15.30 ? 1001 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 18.547 11.889 25.954 1.00 16.26 ? 1001 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 19.316 12.290 24.812 1.00 16.97 ? 1001 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 17.693 10.597 25.678 1.00 14.61 ? 1001 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 16.484 10.904 26.381 1.00 14.54 ? 1001 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 17.417 10.992 24.140 1.00 16.23 ? 1001 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 18.793 11.519 23.574 1.00 18.28 ? 1001 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 19.878 10.726 23.109 1.00 13.17 ? 1001 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 20.015 10.735 21.733 1.00 10.24 ? 1001 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 19.230 11.382 21.021 1.00 15.82 ? 1001 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 21.028 10.007 21.183 1.00 11.43 ? 1001 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 21.863 9.315 21.957 1.00 13.52 ? 1001 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 22.843 8.617 21.364 1.00 16.00 ? 1001 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 21.739 9.298 23.404 1.00 16.80 ? 1001 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 20.726 10.025 23.909 1.00 12.11 ? 1001 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 15.495 9.646 26.688 1.00 19.85 ? 1002 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.379 10.066 27.568 1.00 19.23 ? 1002 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 16.328 8.509 27.113 1.00 18.77 ? 1002 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.897 9.401 25.222 1.00 17.27 ? 1002 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 13.891 8.421 25.176 1.00 20.87 ? 1002 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 13.362 8.476 23.647 1.00 24.05 ? 1002 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 14.322 7.992 22.660 1.00 19.34 ? 1002 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 12.002 7.672 23.553 1.00 19.24 ? 1002 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 11.425 8.235 22.397 1.00 18.13 ? 1002 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 12.692 6.306 23.096 1.00 22.81 ? 1002 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 13.840 6.666 22.057 1.00 22.24 ? 1002 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 15.116 5.831 22.183 1.00 16.97 ? 1002 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 15.769 5.412 23.331 1.00 15.93 ? 1002 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 16.860 4.696 23.067 1.00 20.84 ? 1002 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 16.899 4.659 21.670 1.00 15.35 ? 1002 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 17.835 4.040 20.820 1.00 15.42 ? 1002 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 18.837 3.387 21.111 1.00 16.20 ? 1002 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 17.565 4.207 19.440 1.00 12.13 ? 1002 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 16.475 4.918 19.023 1.00 17.01 ? 1002 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 16.305 5.019 17.676 1.00 11.10 ? 1002 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 15.594 5.501 19.808 1.00 19.33 ? 1002 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 15.849 5.343 21.136 1.00 16.25 ? 1002 DG A C4 1
ATOM 39 P P . DT A 1 3 ? 9.913 7.665 22.152 1.00 23.22 ? 1003 DT A P 1
ATOM 40 O OP1 . DT A 1 3 ? 9.087 8.804 21.746 1.00 25.54 ? 1003 DT A OP1 1
ATOM 41 O OP2 . DT A 1 3 ? 9.557 6.774 23.262 1.00 27.63 ? 1003 DT A OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? 10.224 6.723 20.885 1.00 18.43 ? 1003 DT A "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? 10.600 7.356 19.691 1.00 13.00 ? 1003 DT A "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? 10.709 6.034 18.755 1.00 22.52 ? 1003 DT A "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? 11.919 5.278 19.022 1.00 30.00 ? 1003 DT A "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? 9.408 5.167 18.944 1.00 28.57 ? 1003 DT A "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? 9.284 4.638 17.632 1.00 37.57 ? 1003 DT A "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? 10.072 4.006 19.801 1.00 22.44 ? 1003 DT A "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? 11.543 3.794 19.225 1.00 23.11 ? 1003 DT A "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? 12.557 3.179 20.009 1.00 26.24 ? 1003 DT A N1 1
ATOM 51 C C2 . DT A 1 3 ? 13.590 2.643 19.228 1.00 22.78 ? 1003 DT A C2 1
ATOM 52 O O2 . DT A 1 3 ? 13.556 2.730 18.000 1.00 19.74 ? 1003 DT A O2 1
ATOM 53 N N3 . DT A 1 3 ? 14.550 2.063 19.991 1.00 17.57 ? 1003 DT A N3 1
ATOM 54 C C4 . DT A 1 3 ? 14.662 1.923 21.345 1.00 17.10 ? 1003 DT A C4 1
ATOM 55 O O4 . DT A 1 3 ? 15.625 1.354 21.829 1.00 26.93 ? 1003 DT A O4 1
ATOM 56 C C5 . DT A 1 3 ? 13.554 2.502 22.081 1.00 21.77 ? 1003 DT A C5 1
ATOM 57 C C7 . DT A 1 3 ? 13.516 2.443 23.601 1.00 26.25 ? 1003 DT A C7 1
ATOM 58 C C6 . DT A 1 3 ? 12.579 3.091 21.369 1.00 23.65 ? 1003 DT A C6 1
ATOM 59 P P . DA A 1 4 ? 7.844 4.664 16.853 1.00 35.06 ? 1004 DA A P 1
ATOM 60 O OP1 . DA A 1 4 ? 7.504 6.044 16.546 1.00 49.72 ? 1004 DA A OP1 1
ATOM 61 O OP2 . DA A 1 4 ? 6.997 3.680 17.561 1.00 28.04 ? 1004 DA A OP2 1
ATOM 62 O "O5'" . DA A 1 4 ? 8.289 3.947 15.484 1.00 26.40 ? 1004 DA A "O5'" 1
ATOM 63 C "C5'" . DA A 1 4 ? 9.187 4.536 14.588 1.00 29.84 ? 1004 DA A "C5'" 1
ATOM 64 C "C4'" . DA A 1 4 ? 9.865 3.222 13.910 1.00 14.86 ? 1004 DA A "C4'" 1
ATOM 65 O "O4'" . DA A 1 4 ? 10.762 2.533 14.813 1.00 15.74 ? 1004 DA A "O4'" 1
ATOM 66 C "C3'" . DA A 1 4 ? 8.758 2.323 13.295 1.00 16.10 ? 1004 DA A "C3'" 1
ATOM 67 O "O3'" . DA A 1 4 ? 9.362 1.860 12.101 1.00 14.48 ? 1004 DA A "O3'" 1
ATOM 68 C "C2'" . DA A 1 4 ? 8.876 1.141 14.340 1.00 12.91 ? 1004 DA A "C2'" 1
ATOM 69 C "C1'" . DA A 1 4 ? 10.363 1.052 14.856 1.00 19.32 ? 1004 DA A "C1'" 1
ATOM 70 N N9 . DA A 1 4 ? 10.536 0.777 16.334 1.00 16.98 ? 1004 DA A N9 1
ATOM 71 C C8 . DA A 1 4 ? 9.670 1.077 17.365 1.00 17.17 ? 1004 DA A C8 1
ATOM 72 N N7 . DA A 1 4 ? 10.168 0.684 18.519 1.00 15.44 ? 1004 DA A N7 1
ATOM 73 C C5 . DA A 1 4 ? 11.408 0.100 18.234 1.00 17.85 ? 1004 DA A C5 1
ATOM 74 C C6 . DA A 1 4 ? 12.429 -0.506 19.019 1.00 12.40 ? 1004 DA A C6 1
ATOM 75 N N6 . DA A 1 4 ? 12.284 -0.603 20.352 1.00 17.16 ? 1004 DA A N6 1
ATOM 76 N N1 . DA A 1 4 ? 13.527 -0.975 18.422 1.00 13.88 ? 1004 DA A N1 1
ATOM 77 C C2 . DA A 1 4 ? 13.641 -0.863 17.092 1.00 10.38 ? 1004 DA A C2 1
ATOM 78 N N3 . DA A 1 4 ? 12.739 -0.306 16.230 1.00 18.86 ? 1004 DA A N3 1
ATOM 79 C C4 . DA A 1 4 ? 11.650 0.154 16.885 1.00 16.50 ? 1004 DA A C4 1
ATOM 80 P P . DC A 1 5 ? 8.550 0.779 11.149 1.00 17.31 ? 1005 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 9.001 1.080 9.760 1.00 18.34 ? 1005 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 7.143 0.802 11.565 1.00 19.25 ? 1005 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 9.203 -0.597 11.570 1.00 13.64 ? 1005 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 10.545 -0.776 11.167 1.00 14.75 ? 1005 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 10.924 -2.183 11.875 1.00 14.53 ? 1005 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 11.007 -2.004 13.336 1.00 14.68 ? 1005 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 9.908 -3.274 11.463 1.00 14.24 ? 1005 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 10.671 -4.444 11.287 1.00 14.30 ? 1005 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 9.191 -3.430 12.878 1.00 11.67 ? 1005 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 10.366 -3.221 13.958 1.00 14.57 ? 1005 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 10.009 -3.023 15.316 1.00 11.72 ? 1005 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 10.976 -3.437 16.211 1.00 12.47 ? 1005 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 12.037 -3.926 15.851 1.00 13.78 ? 1005 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 10.709 -3.289 17.545 1.00 11.34 ? 1005 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 9.538 -2.748 17.883 1.00 15.17 ? 1005 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 9.249 -2.582 19.207 1.00 17.42 ? 1005 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 8.530 -2.313 16.991 1.00 10.05 ? 1005 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 8.796 -2.464 15.646 1.00 12.01 ? 1005 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 10.107 -5.509 10.175 1.00 18.84 ? 1006 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 10.731 -5.137 8.853 1.00 22.53 ? 1006 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 8.657 -5.552 10.302 1.00 15.88 ? 1006 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 10.852 -6.826 10.587 1.00 18.36 ? 1006 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 10.363 -7.246 11.797 1.00 16.62 ? 1006 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 10.795 -8.817 11.885 1.00 20.17 ? 1006 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 10.502 -9.222 13.268 1.00 19.82 ? 1006 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 9.965 -9.645 10.847 1.00 21.74 ? 1006 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 10.669 -10.876 10.774 1.00 25.49 ? 1006 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 8.733 -9.951 11.805 1.00 23.83 ? 1006 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 9.318 -10.181 13.248 1.00 20.94 ? 1006 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 8.430 -9.706 14.393 1.00 18.61 ? 1006 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 7.236 -9.055 14.374 1.00 14.01 ? 1006 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 6.748 -8.796 15.577 1.00 16.43 ? 1006 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 7.712 -9.328 16.432 1.00 18.41 ? 1006 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 7.743 -9.353 17.844 1.00 14.61 ? 1006 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 6.885 -8.891 18.632 1.00 12.51 ? 1006 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 8.905 -9.988 18.334 1.00 13.76 ? 1006 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 9.888 -10.521 17.538 1.00 7.69 ? 1006 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 10.968 -11.112 18.137 1.00 13.89 ? 1006 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 9.863 -10.497 16.205 1.00 10.36 ? 1006 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 8.751 -9.887 15.723 1.00 14.24 ? 1006 DG A C4 1
HETATM 121 C C8 . DA7 B 2 . ? 19.714 7.034 15.752 1.00 14.78 ? 3014 DA7 A C8 1
HETATM 122 C C7 . DA7 B 2 . ? 20.838 6.469 15.181 1.00 12.96 ? 3014 DA7 A C7 1
HETATM 123 C C6 . DA7 B 2 . ? 21.835 5.908 15.986 1.00 14.84 ? 3014 DA7 A C6 1
HETATM 124 C C5 . DA7 B 2 . ? 21.656 5.863 17.363 1.00 16.62 ? 3014 DA7 A C5 1
HETATM 125 F F . DA7 B 2 . ? 22.574 5.193 18.155 1.00 25.11 ? 3014 DA7 A F 1
HETATM 126 N N10 . DA7 B 2 . ? 20.448 6.373 19.297 1.00 15.38 ? 3014 DA7 A N10 1
HETATM 127 C C4 . DA7 B 2 . ? 19.412 6.980 21.380 1.00 25.87 ? 3014 DA7 A C4 1
HETATM 128 C C3 . DA7 B 2 . ? 18.328 7.605 22.028 1.00 23.05 ? 3014 DA7 A C3 1
HETATM 129 C C2 . DA7 B 2 . ? 17.345 8.268 21.342 1.00 21.43 ? 3014 DA7 A C2 1
HETATM 130 C C1 . DA7 B 2 . ? 17.402 8.316 19.968 1.00 21.42 ? 3014 DA7 A C1 1
HETATM 131 C C13 . DA7 B 2 . ? 19.538 7.047 17.165 1.00 18.42 ? 3014 DA7 A C13 1
HETATM 132 C C14 . DA7 B 2 . ? 20.540 6.420 17.977 1.00 19.79 ? 3014 DA7 A C14 1
HETATM 133 C C12 . DA7 B 2 . ? 19.493 7.011 19.954 1.00 22.60 ? 3014 DA7 A C12 1
HETATM 134 C C11 . DA7 B 2 . ? 18.440 7.706 19.242 1.00 19.78 ? 3014 DA7 A C11 1
HETATM 135 C C9 . DA7 B 2 . ? 18.489 7.735 17.820 1.00 18.90 ? 3014 DA7 A C9 1
HETATM 136 N N9 . DA7 B 2 . ? 17.489 8.311 17.109 1.00 21.55 ? 3014 DA7 A N9 1
HETATM 137 C C15 . DA7 B 2 . ? 20.379 6.131 22.229 1.00 27.25 ? 3014 DA7 A C15 1
HETATM 138 O O15 . DA7 B 2 . ? 21.364 5.625 21.687 1.00 19.70 ? 3014 DA7 A O15 1
HETATM 139 N N16 . DA7 B 2 . ? 20.113 5.934 23.550 1.00 38.95 ? 3014 DA7 A N16 1
HETATM 140 C C17 . DA7 B 2 . ? 21.061 5.133 24.373 1.00 29.98 ? 3014 DA7 A C17 1
HETATM 141 C C18 . DA7 B 2 . ? 20.848 3.630 24.122 0.50 26.71 ? 3014 DA7 A C18 1
HETATM 142 N N19 . DA7 B 2 . ? 19.390 3.297 23.936 0.50 24.39 ? 3014 DA7 A N19 1
HETATM 143 C C20 . DA7 B 2 . ? 19.241 1.880 23.480 0.50 14.30 ? 3014 DA7 A C20 1
HETATM 144 C C21 . DA7 B 2 . ? 18.627 3.558 25.202 0.50 29.50 ? 3014 DA7 A C21 1
HETATM 145 C C8 A DA7 C 2 . ? 9.021 -13.845 22.131 0.50 26.57 ? 3015 DA7 A C8 1
HETATM 146 C C7 A DA7 C 2 . ? 8.408 -13.508 23.333 0.50 26.23 ? 3015 DA7 A C7 1
HETATM 147 C C6 A DA7 C 2 . ? 7.174 -12.877 23.329 0.50 20.18 ? 3015 DA7 A C6 1
HETATM 148 C C5 A DA7 C 2 . ? 6.602 -12.452 22.132 0.50 9.85 ? 3015 DA7 A C5 1
HETATM 149 F F A DA7 C 2 . ? 5.346 -11.852 22.172 0.50 13.40 ? 3015 DA7 A F 1
HETATM 150 N N10 A DA7 C 2 . ? 6.566 -12.483 19.813 0.50 14.11 ? 3015 DA7 A N10 1
HETATM 151 C C4 A DA7 C 2 . ? 6.299 -12.292 17.472 0.50 14.75 ? 3015 DA7 A C4 1
HETATM 152 C C3 A DA7 C 2 . ? 6.840 -12.550 16.202 0.50 17.95 ? 3015 DA7 A C3 1
HETATM 153 C C2 A DA7 C 2 . ? 8.038 -13.211 16.059 0.50 10.09 ? 3015 DA7 A C2 1
HETATM 154 C C1 A DA7 C 2 . ? 8.762 -13.630 17.150 0.50 12.18 ? 3015 DA7 A C1 1
HETATM 155 C C13 A DA7 C 2 . ? 8.447 -13.477 20.894 0.50 14.07 ? 3015 DA7 A C13 1
HETATM 156 C C14 A DA7 C 2 . ? 7.168 -12.835 20.917 0.50 8.93 ? 3015 DA7 A C14 1
HETATM 157 C C12 A DA7 C 2 . ? 7.092 -12.671 18.613 0.50 8.03 ? 3015 DA7 A C12 1
HETATM 158 C C11 A DA7 C 2 . ? 8.308 -13.429 18.464 0.50 15.27 ? 3015 DA7 A C11 1
HETATM 159 C C9 A DA7 C 2 . ? 8.985 -13.872 19.635 0.50 7.33 ? 3015 DA7 A C9 1
HETATM 160 N N9 A DA7 C 2 . ? 10.204 -14.460 19.647 0.50 11.23 ? 3015 DA7 A N9 1
HETATM 161 C C15 A DA7 C 2 . ? 4.973 -11.506 17.651 0.50 21.65 ? 3015 DA7 A C15 1
HETATM 162 O O15 A DA7 C 2 . ? 4.446 -11.452 18.775 0.50 11.66 ? 3015 DA7 A O15 1
HETATM 163 N N16 A DA7 C 2 . ? 4.388 -10.838 16.626 0.50 23.07 ? 3015 DA7 A N16 1
HETATM 164 C C17 A DA7 C 2 . ? 3.098 -10.139 16.766 0.38 15.30 ? 3015 DA7 A C17 1
HETATM 165 C C18 A DA7 C 2 . ? 3.232 -8.620 16.917 0.38 12.58 ? 3015 DA7 A C18 1
HETATM 166 N N19 A DA7 C 2 . ? 4.180 -7.949 15.964 0.38 10.47 ? 3015 DA7 A N19 1
HETATM 167 C C20 A DA7 C 2 . ? 3.567 -7.709 14.628 0.38 17.78 ? 3015 DA7 A C20 1
HETATM 168 C C21 A DA7 C 2 . ? 4.763 -6.692 16.520 0.38 18.80 ? 3015 DA7 A C21 1
HETATM 169 O O . HOH D 3 . ? 22.864 11.696 26.721 1.00 12.26 ? 4001 HOH A O 1
HETATM 170 O O . HOH D 3 . ? 11.846 9.857 28.011 1.00 14.55 ? 4002 HOH A O 1
HETATM 171 O O . HOH D 3 . ? 13.046 -5.880 7.578 1.00 17.62 ? 4003 HOH A O 1
HETATM 172 O O . HOH D 3 . ? 12.152 -12.662 12.695 1.00 18.94 ? 4004 HOH A O 1
HETATM 173 O O . HOH D 3 . ? 14.238 7.720 18.823 1.00 27.27 ? 4005 HOH A O 1
HETATM 174 O O . HOH D 3 . ? 19.993 8.944 29.279 1.00 23.62 ? 4006 HOH A O 1
HETATM 175 O O . HOH D 3 . ? 18.582 7.288 25.556 1.00 24.25 ? 4007 HOH A O 1
HETATM 176 O O . HOH D 3 . ? 6.804 -6.854 11.886 1.00 34.18 ? 4008 HOH A O 1
HETATM 177 O O . HOH D 3 . ? 6.846 -4.139 9.672 1.00 39.67 ? 4009 HOH A O 1
HETATM 178 O O . HOH D 3 . ? 9.626 0.373 20.932 1.00 28.39 ? 4010 HOH A O 1
HETATM 179 O O . HOH D 3 . ? 15.032 6.616 28.210 1.00 26.48 ? 4011 HOH A O 1
HETATM 180 O O . HOH D 3 . ? 17.382 8.677 29.625 1.00 25.57 ? 4012 HOH A O 1
HETATM 181 O O . HOH D 3 . ? 6.256 -1.190 13.542 1.00 31.33 ? 4013 HOH A O 1
HETATM 182 O O . HOH D 3 . ? 24.095 5.418 21.545 1.00 33.81 ? 4014 HOH A O 1
HETATM 183 O O . HOH D 3 . ? 9.965 -14.142 13.263 1.00 22.81 ? 4015 HOH A O 1
HETATM 184 O O . HOH D 3 . ? 6.683 -1.933 20.054 1.00 36.58 ? 4016 HOH A O 1
HETATM 185 O O . HOH D 3 . ? 6.472 0.762 17.090 1.00 34.50 ? 4017 HOH A O 1
HETATM 186 O O . HOH D 3 . ? 10.612 -2.634 8.554 1.00 23.75 ? 4018 HOH A O 1
HETATM 187 O O . HOH D 3 . ? 8.445 -0.862 7.786 1.00 18.74 ? 4019 HOH A O 1
HETATM 188 O O . HOH D 3 . ? 12.997 5.790 26.459 0.50 23.35 ? 4020 HOH A O 1
HETATM 189 O O . HOH D 3 . ? 14.069 4.801 26.499 0.50 21.35 ? 4021 HOH A O 1
HETATM 190 O O . HOH D 3 . ? 5.560 -4.700 13.912 1.00 32.95 ? 4022 HOH A O 1
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