data_1DJ6
#
_entry.id 1DJ6
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1DJ6 pdb_00001dj6 10.2210/pdb1dj6/pdb
NDB ZD0003 ? ?
RCSB RCSB010125 ? ?
WWPDB D_1000010125 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1999-12-18
2 'Structure model' 1 1 2008-04-27
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-04
5 'Structure model' 1 4 2018-04-04
6 'Structure model' 1 5 2024-02-07
7 'Structure model' 1 6 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 6 'Structure model' 'Data collection'
6 6 'Structure model' 'Database references'
7 6 'Structure model' 'Derived calculations'
8 7 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' diffrn_source
3 6 'Structure model' chem_comp_atom
4 6 'Structure model' chem_comp_bond
5 6 'Structure model' database_2
6 6 'Structure model' pdbx_struct_conn_angle
7 6 'Structure model' struct_conn
8 6 'Structure model' struct_site
9 7 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_software.name'
2 5 'Structure model' '_diffrn_source.type'
3 6 'Structure model' '_database_2.pdbx_DOI'
4 6 'Structure model' '_database_2.pdbx_database_accession'
5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'
12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
18 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'
19 6 'Structure model' '_pdbx_struct_conn_angle.value'
20 6 'Structure model' '_struct_conn.pdbx_dist_value'
21 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
22 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
23 6 'Structure model' '_struct_conn.ptnr1_label_asym_id'
24 6 'Structure model' '_struct_conn.ptnr1_label_atom_id'
25 6 'Structure model' '_struct_conn.ptnr1_label_comp_id'
26 6 'Structure model' '_struct_conn.ptnr1_label_seq_id'
27 6 'Structure model' '_struct_conn.ptnr1_symmetry'
28 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
29 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
30 6 'Structure model' '_struct_conn.ptnr2_label_asym_id'
31 6 'Structure model' '_struct_conn.ptnr2_label_atom_id'
32 6 'Structure model' '_struct_conn.ptnr2_label_comp_id'
33 6 'Structure model' '_struct_conn.ptnr2_label_seq_id'
34 6 'Structure model' '_struct_conn.ptnr2_symmetry'
35 6 'Structure model' '_struct_site.pdbx_auth_asym_id'
36 6 'Structure model' '_struct_site.pdbx_auth_comp_id'
37 6 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1DJ6
_pdbx_database_status.recvd_initial_deposition_date 1999-12-01
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 292D 'CRYSTAL STRUCTURE OF D(CG)3+PA(24) COMPLEX' unspecified
PDB 293D 'CRYSTAL STRUCTURE OF D(CG)3+SPERMIDINE COMPLEX' unspecified
PDB 336D 'CRYSTAL STRUCTURE OF D(CG)3+THERMOSPERMINE COMPLEX' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Ohishi, H.' 1
'Tomita, K.-i.' 2
'Nakanishi, I.' 3
'Ohtsuchi, M.' 4
'Hakoshima, T.' 5
'Rich, A.' 6
#
_citation.id primary
_citation.title
;The crystal structure of N1-[2-(2-amino-ethylamino)-ethyl]-ethane-1,2-diamine (polyamines) binding to the minor groove of d(CGCGCG)2, hexamer at room temperature
;
_citation.journal_abbrev 'FEBS Lett.'
_citation.journal_volume 523
_citation.page_first 29
_citation.page_last 34
_citation.year 2002
_citation.journal_id_ASTM FEBLAL
_citation.country NE
_citation.journal_id_ISSN 0014-5793
_citation.journal_id_CSD 0165
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 12123799
_citation.pdbx_database_id_DOI '10.1016/S0014-5793(02)02922-8'
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ohishi, H.' 1 ?
primary 'Suzuki, K.' 2 ?
primary 'Ohtsuchi, M.' 3 ?
primary 'Hakoshima, T.' 4 ?
primary 'Rich, A.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*CP*GP*CP*G)-3'" 1810.205 2 ? ? ? ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
3 non-polymer syn "N,N'-BIS(2-AMINOETHYL)-1,2-ETHANEDIAMINE" 146.234 2 ? ? ? ?
4 water nat water 18.015 88 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGCGCG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 "N,N'-BIS(2-AMINOETHYL)-1,2-ETHANEDIAMINE" 104
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DC n
1 4 DG n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
104 non-polymer . "N,N'-BIS(2-AMINOETHYL)-1,2-ETHANEDIAMINE" TRIENTINE 'C6 H18 N4' 146.234
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
B 1 1 DC 1 7 7 DC C B . n
B 1 2 DG 2 8 8 DG G B . n
B 1 3 DC 3 9 9 DC C B . n
B 1 4 DG 4 10 10 DG G B . n
B 1 5 DC 5 11 11 DC C B . n
B 1 6 DG 6 12 12 DG G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG 1 104 80 MG MG A .
D 3 104 1 13 13 104 104 A .
E 3 104 1 14 14 104 104 B .
F 4 HOH 1 17 17 HOH WAT A .
F 4 HOH 2 21 21 HOH WAT A .
F 4 HOH 3 26 26 HOH WAT A .
F 4 HOH 4 27 27 HOH WAT A .
F 4 HOH 5 31 31 HOH WAT A .
F 4 HOH 6 33 33 HOH WAT A .
F 4 HOH 7 34 34 HOH WAT A .
F 4 HOH 8 35 35 HOH WAT A .
F 4 HOH 9 36 36 HOH WAT A .
F 4 HOH 10 37 37 HOH WAT A .
F 4 HOH 11 39 39 HOH WAT A .
F 4 HOH 12 40 40 HOH WAT A .
F 4 HOH 13 41 41 HOH WAT A .
F 4 HOH 14 42 42 HOH WAT A .
F 4 HOH 15 43 43 HOH WAT A .
F 4 HOH 16 44 44 HOH WAT A .
F 4 HOH 17 45 45 HOH WAT A .
F 4 HOH 18 46 46 HOH WAT A .
F 4 HOH 19 47 47 HOH WAT A .
F 4 HOH 20 49 49 HOH WAT A .
F 4 HOH 21 50 50 HOH WAT A .
F 4 HOH 22 51 51 HOH WAT A .
F 4 HOH 23 53 53 HOH WAT A .
F 4 HOH 24 54 54 HOH WAT A .
F 4 HOH 25 55 55 HOH WAT A .
F 4 HOH 26 56 56 HOH WAT A .
F 4 HOH 27 57 57 HOH WAT A .
F 4 HOH 28 58 58 HOH WAT A .
F 4 HOH 29 59 59 HOH WAT A .
F 4 HOH 30 61 61 HOH WAT A .
F 4 HOH 31 64 64 HOH WAT A .
F 4 HOH 32 65 65 HOH WAT A .
F 4 HOH 33 68 68 HOH WAT A .
F 4 HOH 34 72 72 HOH WAT A .
F 4 HOH 35 73 73 HOH WAT A .
F 4 HOH 36 74 74 HOH WAT A .
F 4 HOH 37 75 75 HOH WAT A .
F 4 HOH 38 79 79 HOH WAT A .
F 4 HOH 39 81 81 HOH WAT A .
F 4 HOH 40 82 82 HOH WAT A .
F 4 HOH 41 83 83 HOH WAT A .
F 4 HOH 42 84 84 HOH WAT A .
F 4 HOH 43 85 85 HOH WAT A .
F 4 HOH 44 86 86 HOH WAT A .
F 4 HOH 45 87 87 HOH WAT A .
F 4 HOH 46 88 88 HOH WAT A .
F 4 HOH 47 89 89 HOH WAT A .
F 4 HOH 48 90 90 HOH WAT A .
F 4 HOH 49 91 91 HOH WAT A .
F 4 HOH 50 92 92 HOH WAT A .
F 4 HOH 51 93 93 HOH WAT A .
F 4 HOH 52 97 97 HOH WAT A .
F 4 HOH 53 99 99 HOH WAT A .
F 4 HOH 54 101 101 HOH WAT A .
F 4 HOH 55 102 102 HOH WAT A .
F 4 HOH 56 103 103 HOH WAT A .
G 4 HOH 1 15 15 HOH WAT B .
G 4 HOH 2 16 16 HOH WAT B .
G 4 HOH 3 18 18 HOH WAT B .
G 4 HOH 4 19 19 HOH WAT B .
G 4 HOH 5 20 20 HOH WAT B .
G 4 HOH 6 22 22 HOH WAT B .
G 4 HOH 7 23 23 HOH WAT B .
G 4 HOH 8 24 24 HOH WAT B .
G 4 HOH 9 25 25 HOH WAT B .
G 4 HOH 10 28 28 HOH WAT B .
G 4 HOH 11 29 29 HOH WAT B .
G 4 HOH 12 30 30 HOH WAT B .
G 4 HOH 13 32 32 HOH WAT B .
G 4 HOH 14 38 38 HOH WAT B .
G 4 HOH 15 48 48 HOH WAT B .
G 4 HOH 16 52 52 HOH WAT B .
G 4 HOH 17 60 60 HOH WAT B .
G 4 HOH 18 62 62 HOH WAT B .
G 4 HOH 19 63 63 HOH WAT B .
G 4 HOH 20 66 66 HOH WAT B .
G 4 HOH 21 67 67 HOH WAT B .
G 4 HOH 22 69 69 HOH WAT B .
G 4 HOH 23 70 70 HOH WAT B .
G 4 HOH 24 71 71 HOH WAT B .
G 4 HOH 25 76 76 HOH WAT B .
G 4 HOH 26 77 77 HOH WAT B .
G 4 HOH 27 78 78 HOH WAT B .
G 4 HOH 28 94 94 HOH WAT B .
G 4 HOH 29 95 95 HOH WAT B .
G 4 HOH 30 96 96 HOH WAT B .
G 4 HOH 31 98 98 HOH WAT B .
G 4 HOH 32 100 100 HOH WAT B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
DIFDAT 'data reduction' . ? 1
X-PLOR 'model building' . ? 2
SHELXL refinement . ? 3
X-PLOR phasing . ? 4
#
_cell.entry_id 1DJ6
_cell.length_a 17.93
_cell.length_b 31.36
_cell.length_c 44.62
_cell.angle_alpha 90.0
_cell.angle_beta 90.0
_cell.angle_gamma 90.0
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1DJ6
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting orthorhombic
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1DJ6
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 6
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 29.00
_exptl_crystal.density_Matthews 1.73
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 283
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
;2MM AMMONIUM SALT OF D(CG)3, 10MM POLYAMINE PA(222) TETRACHLORIDE, 15MM MGCL2, 30MM SODIUM CACODYLATE BUFFER, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 283K
;
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 MGCL2 ? ? ?
1 2 1 'SODIUM CACODYLATE BUFFER' ? ? ?
1 3 1 'POLYAMINE PA(222) TETRACHLORIDE' ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 283.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'NICOLET P3'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'SEALED TUBE'
_diffrn_source.type OTHER
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1DJ6
_reflns.observed_criterion_sigma_I 3.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 10.0
_reflns.d_resolution_high 1.0
_reflns.number_obs 11212
_reflns.number_all 11627
_reflns.percent_possible_obs 96.4
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 40000
_reflns.B_iso_Wilson_estimate 5.7
_reflns.pdbx_redundancy 0.07
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1DJ6
_refine.ls_number_reflns_obs 11212
_refine.ls_number_reflns_all 11627
_refine.pdbx_ls_sigma_I 3
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 10.0
_refine.ls_d_res_high 1.0
_refine.ls_percent_reflns_obs 96.4
_refine.ls_R_factor_obs 0.165
_refine.ls_R_factor_all 0.169
_refine.ls_R_factor_R_work 0.14
_refine.ls_R_factor_R_free 0.169
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model Z-DNA
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 240
_refine_hist.pdbx_number_atoms_ligand 20
_refine_hist.number_atoms_solvent 89
_refine_hist.number_atoms_total 349
_refine_hist.d_res_high 1.0
_refine_hist.d_res_low 10.0
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.001 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 1DJ6
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1DJ6
_struct.title 'COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1DJ6
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text
'Z-DNA:POLYAMINE COMPLEX, X-RAY CRYSTAL STRUCTURE, POLYAMINE BINDING IN MINOR GROOVE OF Z-DNA, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
F N N 4 ?
G N N 4 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1DJ6
_struct_ref.pdbx_db_accession 1DJ6
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1DJ6 A 1 ? 6 ? 1DJ6 1 ? 6 ? 1 6
2 1 1DJ6 B 1 ? 6 ? 1DJ6 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DC 3 OP2 ? ? ? 4_465 C MG . MG ? ? A DC 3 A MG 104 1_555 ? ? ? ? ? ? ? 2.703 ? ?
metalc2 metalc ? ? F HOH . O ? ? ? 4_465 C MG . MG ? ? A HOH 51 A MG 104 1_555 ? ? ? ? ? ? ? 2.960 ? ?
metalc3 metalc ? ? F HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 82 A MG 104 1_555 ? ? ? ? ? ? ? 2.576 ? ?
metalc4 metalc ? ? F HOH . O ? ? ? 4_465 C MG . MG ? ? A HOH 84 A MG 104 1_555 ? ? ? ? ? ? ? 2.636 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 OP2 ? A DC 3 ? A DC 3 ? 4_465 MG ? C MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 51 ? 4_465 91.5 ?
2 OP2 ? A DC 3 ? A DC 3 ? 4_465 MG ? C MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 82 ? 1_555 121.3 ?
3 O ? F HOH . ? A HOH 51 ? 4_465 MG ? C MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 82 ? 1_555 131.9 ?
4 OP2 ? A DC 3 ? A DC 3 ? 4_465 MG ? C MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 84 ? 4_465 139.4 ?
5 O ? F HOH . ? A HOH 51 ? 4_465 MG ? C MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 84 ? 4_465 69.0 ?
6 O ? F HOH . ? A HOH 82 ? 1_555 MG ? C MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 84 ? 4_465 97.0 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A MG 104 ? 4 'BINDING SITE FOR RESIDUE MG A 104'
AC2 Software A 104 13 ? 12 'BINDING SITE FOR RESIDUE 104 A 13'
AC3 Software B 104 14 ? 15 'BINDING SITE FOR RESIDUE 104 B 14'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 4 DC A 3 ? DC A 3 . ? 4_465 ?
2 AC1 4 HOH F . ? HOH A 51 . ? 4_465 ?
3 AC1 4 HOH F . ? HOH A 82 . ? 1_555 ?
4 AC1 4 HOH F . ? HOH A 84 . ? 4_465 ?
5 AC2 12 DC A 3 ? DC A 3 . ? 1_555 ?
6 AC2 12 DG A 4 ? DG A 4 . ? 1_555 ?
7 AC2 12 DC A 5 ? DC A 5 . ? 1_555 ?
8 AC2 12 DG A 6 ? DG A 6 . ? 1_555 ?
9 AC2 12 HOH F . ? HOH A 72 . ? 1_555 ?
10 AC2 12 HOH F . ? HOH A 79 . ? 1_655 ?
11 AC2 12 HOH F . ? HOH A 81 . ? 1_555 ?
12 AC2 12 HOH F . ? HOH A 90 . ? 1_655 ?
13 AC2 12 HOH F . ? HOH A 101 . ? 3_645 ?
14 AC2 12 DC B 3 ? DC B 9 . ? 1_555 ?
15 AC2 12 HOH G . ? HOH B 15 . ? 1_555 ?
16 AC2 12 HOH G . ? HOH B 22 . ? 1_655 ?
17 AC3 15 DC A 5 ? DC A 5 . ? 3_645 ?
18 AC3 15 DG A 6 ? DG A 6 . ? 3_645 ?
19 AC3 15 DC B 1 ? DC B 7 . ? 3_645 ?
20 AC3 15 DG B 2 ? DG B 8 . ? 1_555 ?
21 AC3 15 DG B 6 ? DG B 12 . ? 4_455 ?
22 AC3 15 HOH G . ? HOH B 19 . ? 3_645 ?
23 AC3 15 HOH G . ? HOH B 20 . ? 1_555 ?
24 AC3 15 HOH G . ? HOH B 24 . ? 1_555 ?
25 AC3 15 HOH G . ? HOH B 25 . ? 1_555 ?
26 AC3 15 HOH G . ? HOH B 30 . ? 1_555 ?
27 AC3 15 HOH G . ? HOH B 69 . ? 1_555 ?
28 AC3 15 HOH G . ? HOH B 70 . ? 1_555 ?
29 AC3 15 HOH G . ? HOH B 77 . ? 1_555 ?
30 AC3 15 HOH G . ? HOH B 78 . ? 1_555 ?
31 AC3 15 HOH G . ? HOH B 95 . ? 1_555 ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O A HOH 65 ? ? O A HOH 83 ? ? 1.31
2 1 O A HOH 55 ? ? O B HOH 62 ? ? 1.49
3 1 O A HOH 61 ? ? O A HOH 73 ? ? 1.54
4 1 O A HOH 26 ? ? O A HOH 44 ? ? 1.81
5 1 C5 A 104 13 ? ? O B HOH 15 ? ? 1.84
6 1 "C2'" A DG 2 ? ? O A HOH 87 ? ? 1.94
7 1 O A HOH 35 ? ? O A HOH 36 ? ? 1.96
8 1 O B HOH 29 ? ? O B HOH 95 ? ? 2.05
9 1 N1 A 104 13 ? ? O A HOH 81 ? ? 2.07
10 1 O A HOH 41 ? ? O A HOH 92 ? ? 2.14
11 1 N1 B 104 14 ? ? O B HOH 20 ? ? 2.16
12 1 N1 B 104 14 ? ? O B HOH 70 ? ? 2.17
13 1 O A HOH 102 ? ? O A HOH 103 ? ? 2.18
14 1 O A HOH 79 ? ? O A HOH 93 ? ? 2.19
#
loop_
_pdbx_validate_symm_contact.id
_pdbx_validate_symm_contact.PDB_model_num
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_asym_id_1
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.PDB_ins_code_1
_pdbx_validate_symm_contact.label_alt_id_1
_pdbx_validate_symm_contact.site_symmetry_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_asym_id_2
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.PDB_ins_code_2
_pdbx_validate_symm_contact.label_alt_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_pdbx_validate_symm_contact.dist
1 1 O A HOH 99 ? ? 1_555 O B HOH 94 ? ? 3_655 1.46
2 1 O A HOH 99 ? ? 1_555 O B HOH 100 ? ? 3_655 1.53
3 1 O A HOH 35 ? ? 1_555 O A HOH 75 ? ? 4_465 1.75
4 1 O A HOH 33 ? ? 1_555 O B HOH 32 ? ? 2_564 1.86
5 1 O A HOH 59 ? ? 1_555 O A HOH 64 ? ? 4_565 1.88
6 1 N7 A DG 6 ? ? 1_555 N1 B 104 14 ? ? 3_655 2.13
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? 1.588 1.440 0.148 0.016 N
2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 1.601 1.518 0.083 0.012 N
3 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.591 1.519 0.072 0.010 N
4 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.516 1.435 0.081 0.013 N
5 1 "C1'" A DC 1 ? ? N1 A DC 1 ? ? 1.607 1.488 0.119 0.013 N
6 1 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.279 1.335 -0.056 0.009 N
7 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.513 1.425 0.088 0.008 N
8 1 C5 A DC 1 ? ? C6 A DC 1 ? ? 1.205 1.339 -0.134 0.008 N
9 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 1.564 1.440 0.124 0.016 N
10 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.429 1.509 -0.080 0.011 N
11 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.605 1.529 0.076 0.010 N
12 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.681 1.518 0.163 0.012 N
13 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.431 1.518 -0.087 0.010 N
14 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.645 1.420 0.225 0.011 N
15 1 C2 A DG 2 ? ? N3 A DG 2 ? ? 1.496 1.323 0.173 0.008 N
16 1 N3 A DG 2 ? ? C4 A DG 2 ? ? 1.275 1.350 -0.075 0.007 N
17 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.473 1.379 0.094 0.007 N
18 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.318 1.391 -0.073 0.007 N
19 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.329 1.388 -0.059 0.006 N
20 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.520 1.375 0.145 0.008 N
21 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.621 1.519 0.102 0.010 N
22 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.538 1.449 0.089 0.009 N
23 1 "C1'" A DC 3 ? ? N1 A DC 3 ? ? 1.618 1.488 0.130 0.013 N
24 1 C2 A DC 3 ? ? O2 A DC 3 ? ? 1.350 1.240 0.110 0.009 N
25 1 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.432 1.335 0.097 0.009 N
26 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.299 1.367 -0.068 0.006 N
27 1 C2 A DC 3 ? ? N3 A DC 3 ? ? 1.288 1.353 -0.065 0.008 N
28 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.289 1.335 -0.046 0.007 N
29 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.605 1.512 0.093 0.007 N
30 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.642 1.529 0.113 0.010 N
31 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.428 1.516 -0.088 0.008 N
32 1 "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 1.624 1.519 0.105 0.010 N
33 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? 1.492 1.420 0.072 0.011 N
34 1 C2 A DG 4 ? ? N3 A DG 4 ? ? 1.265 1.323 -0.058 0.008 N
35 1 C5 A DG 4 ? ? C6 A DG 4 ? ? 1.158 1.419 -0.261 0.010 N
36 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.587 1.391 0.196 0.007 N
37 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.257 1.305 -0.048 0.006 N
38 1 C6 A DG 4 ? ? O6 A DG 4 ? ? 1.387 1.237 0.150 0.009 N
39 1 C2 A DC 5 ? ? O2 A DC 5 ? ? 1.177 1.240 -0.063 0.009 N
40 1 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.400 1.335 0.065 0.009 N
41 1 N1 A DC 5 ? ? C2 A DC 5 ? ? 1.477 1.397 0.080 0.010 N
42 1 N1 A DC 5 ? ? C6 A DC 5 ? ? 1.419 1.367 0.052 0.006 N
43 1 C2 A DC 5 ? ? N3 A DC 5 ? ? 1.301 1.353 -0.052 0.008 N
44 1 C5 A DC 5 ? ? C6 A DC 5 ? ? 1.487 1.339 0.148 0.008 N
45 1 "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.617 1.519 0.098 0.010 N
46 1 "C1'" A DG 6 ? ? N9 A DG 6 ? ? 1.331 1.468 -0.137 0.014 N
47 1 N1 A DG 6 ? ? C2 A DG 6 ? ? 1.484 1.373 0.111 0.008 N
48 1 C4 A DG 6 ? ? C5 A DG 6 ? ? 1.479 1.379 0.100 0.007 N
49 1 C5 A DG 6 ? ? C6 A DG 6 ? ? 1.358 1.419 -0.061 0.010 N
50 1 C5 A DG 6 ? ? N7 A DG 6 ? ? 1.456 1.388 0.068 0.006 N
51 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.439 1.305 0.134 0.006 N
52 1 "O5'" B DC 7 ? ? "C5'" B DC 7 ? ? 1.604 1.440 0.164 0.016 N
53 1 "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 1.435 1.509 -0.074 0.011 N
54 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? 1.304 1.446 -0.142 0.010 N
55 1 C4 B DC 7 ? ? N4 B DC 7 ? ? 1.177 1.335 -0.158 0.009 N
56 1 N1 B DC 7 ? ? C6 B DC 7 ? ? 1.502 1.367 0.135 0.006 N
57 1 N3 B DC 7 ? ? C4 B DC 7 ? ? 1.415 1.335 0.080 0.007 N
58 1 C4 B DC 7 ? ? C5 B DC 7 ? ? 1.348 1.425 -0.077 0.008 N
59 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 1.704 1.518 0.186 0.012 N
60 1 N3 B DG 8 ? ? C4 B DG 8 ? ? 1.392 1.350 0.042 0.007 N
61 1 C5 B DG 8 ? ? C6 B DG 8 ? ? 1.554 1.419 0.135 0.010 N
62 1 C6 B DG 8 ? ? N1 B DG 8 ? ? 1.459 1.391 0.068 0.007 N
63 1 C5 B DG 8 ? ? N7 B DG 8 ? ? 1.317 1.388 -0.071 0.006 N
64 1 N7 B DG 8 ? ? C8 B DG 8 ? ? 1.421 1.305 0.116 0.006 N
65 1 C6 B DG 8 ? ? O6 B DG 8 ? ? 1.129 1.237 -0.108 0.009 N
66 1 "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? 1.460 1.521 -0.061 0.010 N
67 1 "C3'" B DC 9 ? ? "C2'" B DC 9 ? ? 1.623 1.518 0.105 0.012 N
68 1 "O4'" B DC 9 ? ? "C4'" B DC 9 ? ? 1.368 1.446 -0.078 0.010 N
69 1 "C1'" B DC 9 ? ? N1 B DC 9 ? ? 1.597 1.488 0.109 0.013 N
70 1 N1 B DC 9 ? ? C6 B DC 9 ? ? 1.447 1.367 0.080 0.006 N
71 1 C4 B DC 9 ? ? C5 B DC 9 ? ? 1.494 1.425 0.069 0.008 N
72 1 "O5'" B DG 10 ? ? "C5'" B DG 10 ? ? 1.552 1.440 0.112 0.016 N
73 1 "C4'" B DG 10 ? ? "C3'" B DG 10 ? ? 1.592 1.529 0.063 0.010 N
74 1 "C3'" B DG 10 ? ? "C2'" B DG 10 ? ? 1.383 1.516 -0.133 0.008 N
75 1 "C2'" B DG 10 ? ? "C1'" B DG 10 ? ? 1.675 1.519 0.156 0.010 N
76 1 "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? 1.337 1.446 -0.109 0.010 N
77 1 "O3'" B DG 10 ? ? "C3'" B DG 10 ? ? 1.542 1.435 0.107 0.013 N
78 1 "C1'" B DG 10 ? ? N9 B DG 10 ? ? 1.620 1.488 0.132 0.013 N
79 1 C2 B DG 10 ? ? N3 B DG 10 ? ? 1.275 1.323 -0.048 0.008 N
80 1 N3 B DG 10 ? ? C4 B DG 10 ? ? 1.307 1.350 -0.043 0.007 N
81 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.338 1.388 -0.050 0.006 N
82 1 N7 B DG 10 ? ? C8 B DG 10 ? ? 1.264 1.305 -0.041 0.006 N
83 1 C8 B DG 10 ? ? N9 B DG 10 ? ? 1.283 1.374 -0.091 0.007 N
84 1 N9 B DG 10 ? ? C4 B DG 10 ? ? 1.267 1.375 -0.108 0.008 N
85 1 "C5'" B DC 11 ? ? "C4'" B DC 11 ? ? 1.341 1.509 -0.168 0.011 N
86 1 "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 1.821 1.529 0.292 0.010 N
87 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? 1.665 1.518 0.147 0.012 N
88 1 "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 1.582 1.519 0.063 0.010 N
89 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? 1.341 1.446 -0.105 0.010 N
90 1 C4 B DC 11 ? ? N4 B DC 11 ? ? 1.196 1.335 -0.139 0.009 N
91 1 N1 B DC 11 ? ? C6 B DC 11 ? ? 1.288 1.367 -0.079 0.006 N
92 1 C2 B DC 11 ? ? N3 B DC 11 ? ? 1.459 1.353 0.106 0.008 N
93 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.449 1.335 0.114 0.007 N
94 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.518 1.425 0.093 0.008 N
95 1 P B DG 12 ? ? "O5'" B DG 12 ? ? 1.532 1.593 -0.061 0.010 N
96 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.647 1.529 0.118 0.010 N
97 1 "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 1.595 1.519 0.076 0.010 N
98 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.248 1.350 -0.102 0.007 N
99 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.262 1.305 -0.043 0.006 N
100 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.442 1.375 0.067 0.008 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 104.36 109.40 -5.04 0.80 N
2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 96.55 102.40 -5.85 0.80 N
3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 103.15 108.00 -4.85 0.70 N
4 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 125.65 120.30 5.35 0.40 N
5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? N3 A DC 1 ? ? 112.82 119.20 -6.38 0.70 N
6 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 125.40 119.90 5.50 0.50 N
7 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 111.45 121.90 -10.45 0.40 N
8 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 125.80 117.40 8.40 0.50 N
9 1 C5 A DC 1 ? ? C6 A DC 1 ? ? N1 A DC 1 ? ? 117.48 121.00 -3.52 0.50 N
10 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.44 118.90 4.54 0.60 N
11 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 127.92 120.20 7.72 0.70 N
12 1 C2 A DC 1 ? ? N1 A DC 1 ? ? "C1'" A DC 1 ? ? 111.56 118.80 -7.24 1.10 N
13 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.23 104.50 -3.27 0.40 N
14 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 95.30 102.20 -6.90 0.70 N
15 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 116.50 102.50 14.00 1.20 N
16 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 96.46 105.90 -9.44 0.80 N
17 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 99.31 108.00 -8.69 0.70 N
18 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 105.96 111.90 -5.94 0.50 N
19 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 138.82 128.60 10.22 0.50 N
20 1 C4 A DG 2 ? ? C5 A DG 2 ? ? C6 A DG 2 ? ? 106.46 118.80 -12.34 0.60 N
21 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 122.29 111.50 10.79 0.50 N
22 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 118.31 110.80 7.51 0.40 N
23 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 96.52 105.40 -8.88 0.40 N
24 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 135.22 130.40 4.82 0.60 N
25 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 123.31 116.20 7.11 0.90 N
26 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 114.44 119.90 -5.46 0.70 N
27 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 121.06 128.60 -7.54 0.60 N
28 1 C8 A DG 2 ? ? N9 A DG 2 ? ? "C1'" A DG 2 ? ? 118.27 127.00 -8.73 1.30 N
29 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 96.84 102.40 -5.56 0.80 N
30 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 97.03 108.00 -10.97 0.70 N
31 1 N1 A DC 3 ? ? C2 A DC 3 ? ? N3 A DC 3 ? ? 124.30 119.20 5.10 0.70 N
32 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 114.86 119.90 -5.04 0.50 N
33 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 127.59 121.90 5.69 0.40 N
34 1 C4 A DC 3 ? ? C5 A DC 3 ? ? C6 A DC 3 ? ? 111.84 117.40 -5.56 0.50 N
35 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 112.80 118.90 -6.10 0.60 N
36 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 103.83 109.40 -5.57 0.80 N
37 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 100.14 104.50 -4.36 0.40 N
38 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 108.61 103.10 5.51 0.90 N
39 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 101.14 108.00 -6.86 0.70 N
40 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 111.50 125.10 -13.60 0.60 N
41 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 130.71 123.90 6.81 0.60 N
42 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 106.41 111.90 -5.49 0.50 N
43 1 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 134.38 128.60 5.78 0.50 N
44 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 120.17 111.50 8.67 0.50 N
45 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 114.48 110.80 3.68 0.40 N
46 1 N3 A DG 4 ? ? C4 A DG 4 ? ? N9 A DG 4 ? ? 121.81 126.00 -4.19 0.60 N
47 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 106.57 116.20 -9.63 0.90 N
48 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 102.76 119.90 -17.14 0.60 N
49 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 137.05 128.60 8.45 0.60 N
50 1 C8 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 118.16 127.00 -8.84 1.30 N
51 1 C4 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 136.34 126.50 9.84 1.30 N
52 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 124.67 115.70 8.97 1.20 N
53 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 100.72 108.00 -7.28 0.70 N
54 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 123.39 120.30 3.09 0.40 N
55 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 127.50 121.90 5.60 0.40 N
56 1 C4 A DC 5 ? ? C5 A DC 5 ? ? C6 A DC 5 ? ? 114.07 117.40 -3.33 0.50 N
57 1 C5 A DC 5 ? ? C6 A DC 5 ? ? N1 A DC 5 ? ? 115.05 121.00 -5.95 0.50 N
58 1 C5 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 113.92 120.20 -6.28 0.70 N
59 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.56 108.30 3.26 0.30 N
60 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 117.02 123.90 -6.88 0.60 N
61 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 120.13 111.90 8.23 0.50 N
62 1 N3 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 121.92 128.60 -6.68 0.50 N
63 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 108.36 110.80 -2.44 0.40 N
64 1 C5 A DG 6 ? ? N7 A DG 6 ? ? C8 A DG 6 ? ? 101.24 104.30 -3.06 0.50 N
65 1 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 108.84 105.40 3.44 0.40 N
66 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 124.40 119.90 4.50 0.70 N
67 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 124.97 128.60 -3.63 0.60 N
68 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 109.66 106.00 3.66 0.60 N
69 1 "C3'" B DC 7 ? ? "C2'" B DC 7 ? ? "C1'" B DC 7 ? ? 96.10 102.40 -6.30 0.80 N
70 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 103.02 108.00 -4.98 0.70 N
71 1 C6 B DC 7 ? ? N1 B DC 7 ? ? C2 B DC 7 ? ? 114.01 120.30 -6.29 0.40 N
72 1 C2 B DC 7 ? ? N3 B DC 7 ? ? C4 B DC 7 ? ? 126.33 119.90 6.43 0.50 N
73 1 N3 B DC 7 ? ? C4 B DC 7 ? ? C5 B DC 7 ? ? 115.88 121.90 -6.02 0.40 N
74 1 C4 B DC 7 ? ? C5 B DC 7 ? ? C6 B DC 7 ? ? 122.70 117.40 5.30 0.50 N
75 1 C5 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 126.21 120.20 6.01 0.70 N
76 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 111.06 106.80 4.26 0.50 N
77 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.64 108.30 2.34 0.30 N
78 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 132.47 125.10 7.37 0.60 N
79 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 103.48 111.50 -8.02 0.50 N
80 1 N7 B DG 8 ? ? C8 B DG 8 ? ? N9 B DG 8 ? ? 108.72 113.10 -4.38 0.50 N
81 1 N9 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 108.02 105.40 2.62 0.40 N
82 1 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 128.22 119.90 8.32 0.60 N
83 1 C8 B DG 8 ? ? N9 B DG 8 ? ? "C1'" B DG 8 ? ? 118.94 127.00 -8.06 1.30 N
84 1 "O4'" B DC 9 ? ? "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? 110.23 106.00 4.23 0.60 N
85 1 "C3'" B DC 9 ? ? "C2'" B DC 9 ? ? "C1'" B DC 9 ? ? 93.37 102.40 -9.03 0.80 N
86 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 102.94 108.00 -5.06 0.70 N
87 1 C2 B DC 9 ? ? N3 B DC 9 ? ? C4 B DC 9 ? ? 124.28 119.90 4.38 0.50 N
88 1 "C4'" B DG 10 ? ? "C3'" B DG 10 ? ? "C2'" B DG 10 ? ? 112.75 103.10 9.65 0.90 N
89 1 "C3'" B DG 10 ? ? "C2'" B DG 10 ? ? "C1'" B DG 10 ? ? 93.32 102.40 -9.08 0.80 N
90 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? "C2'" B DG 10 ? ? 113.55 106.80 6.75 0.50 N
91 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 101.97 108.00 -6.03 0.70 N
92 1 C2 B DG 10 ? ? N3 B DG 10 ? ? C4 B DG 10 ? ? 115.50 111.90 3.60 0.50 N
93 1 N3 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 125.08 128.60 -3.52 0.50 N
94 1 C4 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 103.05 110.80 -7.75 0.40 N
95 1 C5 B DG 10 ? ? N7 B DG 10 ? ? C8 B DG 10 ? ? 110.13 104.30 5.83 0.50 N
96 1 N7 B DG 10 ? ? C8 B DG 10 ? ? N9 B DG 10 ? ? 108.53 113.10 -4.57 0.50 N
97 1 C8 B DG 10 ? ? N9 B DG 10 ? ? C4 B DG 10 ? ? 110.46 106.40 4.06 0.40 N
98 1 C6 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 137.52 130.40 7.12 0.60 N
99 1 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 124.27 119.90 4.37 0.70 N
100 1 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 125.03 119.90 5.13 0.60 N
101 1 C5 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 124.67 128.60 -3.93 0.60 N
102 1 C8 B DG 10 ? ? N9 B DG 10 ? ? "C1'" B DG 10 ? ? 116.39 127.00 -10.61 1.30 N
103 1 "C1'" B DC 11 ? ? "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? 116.76 110.30 6.46 0.70 N
104 1 "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? 95.13 102.20 -7.07 0.70 N
105 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.45 108.30 3.15 0.30 N
106 1 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 122.77 120.30 2.47 0.40 N
107 1 N1 B DC 11 ? ? C2 B DC 11 ? ? N3 B DC 11 ? ? 109.77 119.20 -9.43 0.70 N
108 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 130.56 119.90 10.66 0.50 N
109 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 111.72 121.90 -10.18 0.40 N
110 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 112.17 117.40 -5.23 0.50 N
111 1 C5 B DC 11 ? ? C6 B DC 11 ? ? N1 B DC 11 ? ? 132.80 121.00 11.80 0.50 N
112 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 124.85 118.90 5.95 0.60 N
113 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 122.33 118.00 4.33 0.70 N
114 1 C5 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 125.90 120.20 5.70 0.70 N
115 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 108.21 111.90 -3.69 0.50 N
116 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 134.80 128.60 6.20 0.50 N
117 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 117.71 110.80 6.91 0.40 N
118 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 100.39 104.30 -3.91 0.50 N
119 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 116.53 113.10 3.43 0.50 N
120 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 98.48 105.40 -6.92 0.40 N
121 1 C6 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 124.89 130.40 -5.51 0.60 N
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id DG
_pdbx_validate_planes.auth_asym_id B
_pdbx_validate_planes.auth_seq_id 10
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.044
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
104 N1 N N N 1
104 C2 C N N 2
104 C3 C N N 3
104 N4 N N N 4
104 C5 C N N 5
104 C6 C N N 6
104 N7 N N N 7
104 C8 C N N 8
104 C9 C N N 9
104 N10 N N N 10
104 H11 H N N 11
104 H12 H N N 12
104 H21 H N N 13
104 H22 H N N 14
104 H31 H N N 15
104 H32 H N N 16
104 HN4 H N N 17
104 H51 H N N 18
104 H52 H N N 19
104 H61 H N N 20
104 H62 H N N 21
104 HN7 H N N 22
104 H81 H N N 23
104 H82 H N N 24
104 H91 H N N 25
104 H92 H N N 26
104 H101 H N N 27
104 H102 H N N 28
DC OP3 O N N 29
DC P P N N 30
DC OP1 O N N 31
DC OP2 O N N 32
DC "O5'" O N N 33
DC "C5'" C N N 34
DC "C4'" C N R 35
DC "O4'" O N N 36
DC "C3'" C N S 37
DC "O3'" O N N 38
DC "C2'" C N N 39
DC "C1'" C N R 40
DC N1 N N N 41
DC C2 C N N 42
DC O2 O N N 43
DC N3 N N N 44
DC C4 C N N 45
DC N4 N N N 46
DC C5 C N N 47
DC C6 C N N 48
DC HOP3 H N N 49
DC HOP2 H N N 50
DC "H5'" H N N 51
DC "H5''" H N N 52
DC "H4'" H N N 53
DC "H3'" H N N 54
DC "HO3'" H N N 55
DC "H2'" H N N 56
DC "H2''" H N N 57
DC "H1'" H N N 58
DC H41 H N N 59
DC H42 H N N 60
DC H5 H N N 61
DC H6 H N N 62
DG OP3 O N N 63
DG P P N N 64
DG OP1 O N N 65
DG OP2 O N N 66
DG "O5'" O N N 67
DG "C5'" C N N 68
DG "C4'" C N R 69
DG "O4'" O N N 70
DG "C3'" C N S 71
DG "O3'" O N N 72
DG "C2'" C N N 73
DG "C1'" C N R 74
DG N9 N Y N 75
DG C8 C Y N 76
DG N7 N Y N 77
DG C5 C Y N 78
DG C6 C N N 79
DG O6 O N N 80
DG N1 N N N 81
DG C2 C N N 82
DG N2 N N N 83
DG N3 N N N 84
DG C4 C Y N 85
DG HOP3 H N N 86
DG HOP2 H N N 87
DG "H5'" H N N 88
DG "H5''" H N N 89
DG "H4'" H N N 90
DG "H3'" H N N 91
DG "HO3'" H N N 92
DG "H2'" H N N 93
DG "H2''" H N N 94
DG "H1'" H N N 95
DG H8 H N N 96
DG H1 H N N 97
DG H21 H N N 98
DG H22 H N N 99
HOH O O N N 100
HOH H1 H N N 101
HOH H2 H N N 102
MG MG MG N N 103
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
104 N1 C2 sing N N 1
104 N1 H11 sing N N 2
104 N1 H12 sing N N 3
104 C2 C3 sing N N 4
104 C2 H21 sing N N 5
104 C2 H22 sing N N 6
104 C3 N4 sing N N 7
104 C3 H31 sing N N 8
104 C3 H32 sing N N 9
104 N4 C5 sing N N 10
104 N4 HN4 sing N N 11
104 C5 C6 sing N N 12
104 C5 H51 sing N N 13
104 C5 H52 sing N N 14
104 C6 N7 sing N N 15
104 C6 H61 sing N N 16
104 C6 H62 sing N N 17
104 N7 C8 sing N N 18
104 N7 HN7 sing N N 19
104 C8 C9 sing N N 20
104 C8 H81 sing N N 21
104 C8 H82 sing N N 22
104 C9 N10 sing N N 23
104 C9 H91 sing N N 24
104 C9 H92 sing N N 25
104 N10 H101 sing N N 26
104 N10 H102 sing N N 27
DC OP3 P sing N N 28
DC OP3 HOP3 sing N N 29
DC P OP1 doub N N 30
DC P OP2 sing N N 31
DC P "O5'" sing N N 32
DC OP2 HOP2 sing N N 33
DC "O5'" "C5'" sing N N 34
DC "C5'" "C4'" sing N N 35
DC "C5'" "H5'" sing N N 36
DC "C5'" "H5''" sing N N 37
DC "C4'" "O4'" sing N N 38
DC "C4'" "C3'" sing N N 39
DC "C4'" "H4'" sing N N 40
DC "O4'" "C1'" sing N N 41
DC "C3'" "O3'" sing N N 42
DC "C3'" "C2'" sing N N 43
DC "C3'" "H3'" sing N N 44
DC "O3'" "HO3'" sing N N 45
DC "C2'" "C1'" sing N N 46
DC "C2'" "H2'" sing N N 47
DC "C2'" "H2''" sing N N 48
DC "C1'" N1 sing N N 49
DC "C1'" "H1'" sing N N 50
DC N1 C2 sing N N 51
DC N1 C6 sing N N 52
DC C2 O2 doub N N 53
DC C2 N3 sing N N 54
DC N3 C4 doub N N 55
DC C4 N4 sing N N 56
DC C4 C5 sing N N 57
DC N4 H41 sing N N 58
DC N4 H42 sing N N 59
DC C5 C6 doub N N 60
DC C5 H5 sing N N 61
DC C6 H6 sing N N 62
DG OP3 P sing N N 63
DG OP3 HOP3 sing N N 64
DG P OP1 doub N N 65
DG P OP2 sing N N 66
DG P "O5'" sing N N 67
DG OP2 HOP2 sing N N 68
DG "O5'" "C5'" sing N N 69
DG "C5'" "C4'" sing N N 70
DG "C5'" "H5'" sing N N 71
DG "C5'" "H5''" sing N N 72
DG "C4'" "O4'" sing N N 73
DG "C4'" "C3'" sing N N 74
DG "C4'" "H4'" sing N N 75
DG "O4'" "C1'" sing N N 76
DG "C3'" "O3'" sing N N 77
DG "C3'" "C2'" sing N N 78
DG "C3'" "H3'" sing N N 79
DG "O3'" "HO3'" sing N N 80
DG "C2'" "C1'" sing N N 81
DG "C2'" "H2'" sing N N 82
DG "C2'" "H2''" sing N N 83
DG "C1'" N9 sing N N 84
DG "C1'" "H1'" sing N N 85
DG N9 C8 sing Y N 86
DG N9 C4 sing Y N 87
DG C8 N7 doub Y N 88
DG C8 H8 sing N N 89
DG N7 C5 sing Y N 90
DG C5 C6 sing N N 91
DG C5 C4 doub Y N 92
DG C6 O6 doub N N 93
DG C6 N1 sing N N 94
DG N1 C2 sing N N 95
DG N1 H1 sing N N 96
DG C2 N2 sing N N 97
DG C2 N3 doub N N 98
DG N2 H21 sing N N 99
DG N2 H22 sing N N 100
DG N3 C4 sing N N 101
HOH O H1 sing N N 102
HOH O H2 sing N N 103
#
_ndb_struct_conf_na.entry_id 1DJ6
_ndb_struct_conf_na.feature 'z-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 6 1_555 -0.435 -0.152 0.107 1.946 0.580 0.374 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1
1 A DG 2 1_555 B DC 5 1_555 0.371 -0.169 -0.138 -5.725 -0.213 0.091 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1
1 A DC 3 1_555 B DG 4 1_555 -0.342 -0.143 0.026 2.482 -5.211 0.876 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1
1 A DG 4 1_555 B DC 3 1_555 0.182 -0.128 0.252 -6.892 -1.949 2.162 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1
1 A DC 5 1_555 B DG 2 1_555 -0.194 -0.088 -0.017 -1.281 -0.069 1.251 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1
1 A DG 6 1_555 B DC 1 1_555 0.218 -0.227 0.145 3.253 3.063 4.079 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.077 5.398 3.643 0.578 -5.280 -4.940 -8.301 4.368 6.404 46.827 5.122
-7.253 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.039 -0.976 3.365 -1.481 -4.202 -51.558 1.407 -0.146 3.280 4.821
-1.699 -51.737 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.005 5.363 3.792 -2.221 -3.865 -6.544 -20.397 -10.637 5.749 29.732
-17.082 -7.916 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 0.014 -0.958 3.431 2.598 -2.295 -53.266 1.218 0.186 3.386 2.557 2.894
-53.371 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.113 5.196 3.401 0.243 -1.385 -9.126 -28.753 1.320 4.136 8.634 1.518
-9.234 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details Z-DNA
#
_atom_sites.entry_id 1DJ6
_atom_sites.fract_transf_matrix[1][1] 0.055772
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.031888
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.022411
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 7.399 13.413 -4.198 1.00 7.23 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 7.145 14.376 -2.961 1.00 4.50 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 8.292 15.290 -2.970 1.00 3.21 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 9.440 14.626 -2.445 1.00 4.92 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 8.672 15.895 -4.283 1.00 7.43 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 9.144 17.326 -4.119 1.00 4.99 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 10.032 15.179 -4.730 1.00 4.51 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 10.616 14.968 -3.265 1.00 4.69 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 11.411 13.575 -3.363 1.00 5.30 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 12.789 13.778 -3.511 1.00 5.32 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 13.288 14.863 -3.643 1.00 6.01 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 13.511 12.593 -3.507 1.00 5.66 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 12.984 11.356 -3.378 1.00 4.33 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 13.727 10.320 -3.476 1.00 6.07 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 11.482 11.410 -3.204 1.00 5.54 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.822 12.411 -3.082 1.00 7.27 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 8.082 18.523 -4.246 1.00 4.96 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 7.110 18.247 -5.310 1.00 5.34 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 8.921 19.759 -4.238 1.00 5.43 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 7.200 18.529 -2.964 1.00 4.96 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 7.768 18.715 -1.519 1.00 6.44 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 6.669 18.473 -0.639 1.00 3.67 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 6.388 17.044 -0.798 1.00 4.92 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 7.342 18.499 0.818 1.00 4.91 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 6.972 19.806 1.401 1.00 7.08 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 6.322 17.339 1.481 1.00 6.42 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 5.779 16.373 0.575 1.00 9.28 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 6.636 15.233 0.675 1.00 5.78 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 6.070 13.968 0.536 1.00 7.20 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 6.928 12.951 0.599 1.00 7.31 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 8.107 13.559 0.516 1.00 4.99 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 9.463 13.129 0.424 1.00 5.02 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 9.757 11.895 0.376 1.00 5.85 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 10.463 13.977 0.292 1.00 4.32 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 10.327 15.314 0.350 1.00 5.56 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 11.376 16.176 0.266 1.00 4.79 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 8.993 15.975 0.499 1.00 3.73 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 8.136 15.032 0.529 1.00 5.46 ? 2 DG A C4 1
ATOM 39 P P . DC A 1 3 ? 8.216 20.767 1.778 1.00 6.80 ? 3 DC A P 1
ATOM 40 O OP1 . DC A 1 3 ? 7.522 22.073 2.157 1.00 6.90 ? 3 DC A OP1 1
ATOM 41 O OP2 . DC A 1 3 ? 9.245 20.768 0.612 1.00 9.07 ? 3 DC A OP2 1
ATOM 42 O "O5'" . DC A 1 3 ? 8.714 19.995 3.101 1.00 7.70 ? 3 DC A "O5'" 1
ATOM 43 C "C5'" . DC A 1 3 ? 9.246 20.754 4.283 1.00 7.03 ? 3 DC A "C5'" 1
ATOM 44 C "C4'" . DC A 1 3 ? 10.594 20.206 4.574 1.00 5.82 ? 3 DC A "C4'" 1
ATOM 45 O "O4'" . DC A 1 3 ? 10.471 18.758 5.078 1.00 4.65 ? 3 DC A "O4'" 1
ATOM 46 C "C3'" . DC A 1 3 ? 11.641 20.269 3.491 1.00 6.19 ? 3 DC A "C3'" 1
ATOM 47 O "O3'" . DC A 1 3 ? 12.941 20.391 4.159 1.00 8.08 ? 3 DC A "O3'" 1
ATOM 48 C "C2'" . DC A 1 3 ? 11.658 18.766 2.976 1.00 5.88 ? 3 DC A "C2'" 1
ATOM 49 C "C1'" . DC A 1 3 ? 11.522 18.062 4.430 1.00 6.90 ? 3 DC A "C1'" 1
ATOM 50 N N1 . DC A 1 3 ? 10.705 16.696 4.139 1.00 4.38 ? 3 DC A N1 1
ATOM 51 C C2 . DC A 1 3 ? 11.490 15.562 4.050 1.00 4.85 ? 3 DC A C2 1
ATOM 52 O O2 . DC A 1 3 ? 12.809 15.842 3.995 1.00 6.37 ? 3 DC A O2 1
ATOM 53 N N3 . DC A 1 3 ? 11.029 14.372 3.878 1.00 4.12 ? 3 DC A N3 1
ATOM 54 C C4 . DC A 1 3 ? 9.745 14.276 3.928 1.00 4.47 ? 3 DC A C4 1
ATOM 55 N N4 . DC A 1 3 ? 9.237 12.944 3.788 1.00 7.36 ? 3 DC A N4 1
ATOM 56 C C5 . DC A 1 3 ? 8.800 15.332 4.056 1.00 4.84 ? 3 DC A C5 1
ATOM 57 C C6 . DC A 1 3 ? 9.415 16.555 4.200 1.00 6.35 ? 3 DC A C6 1
ATOM 58 P P . DG A 1 4 ? 13.688 21.782 4.073 1.00 8.06 ? 4 DG A P 1
ATOM 59 O OP1 . DG A 1 4 ? 13.518 22.454 2.806 1.00 9.12 ? 4 DG A OP1 1
ATOM 60 O OP2 . DG A 1 4 ? 15.090 21.454 4.710 1.00 11.03 ? 4 DG A OP2 1
ATOM 61 O "O5'" . DG A 1 4 ? 12.905 22.643 5.155 1.00 5.23 ? 4 DG A "O5'" 1
ATOM 62 C "C5'" . DG A 1 4 ? 13.023 22.220 6.458 1.00 6.47 ? 4 DG A "C5'" 1
ATOM 63 C "C4'" . DG A 1 4 ? 12.037 23.193 7.268 1.00 5.95 ? 4 DG A "C4'" 1
ATOM 64 O "O4'" . DG A 1 4 ? 10.731 22.821 6.916 1.00 6.07 ? 4 DG A "O4'" 1
ATOM 65 C "C3'" . DG A 1 4 ? 11.998 22.893 8.882 1.00 6.32 ? 4 DG A "C3'" 1
ATOM 66 O "O3'" . DG A 1 4 ? 12.935 23.852 9.372 1.00 5.26 ? 4 DG A "O3'" 1
ATOM 67 C "C2'" . DG A 1 4 ? 10.680 23.158 9.363 1.00 5.14 ? 4 DG A "C2'" 1
ATOM 68 C "C1'" . DG A 1 4 ? 9.768 22.849 8.055 1.00 4.79 ? 4 DG A "C1'" 1
ATOM 69 N N9 . DG A 1 4 ? 9.195 21.438 7.991 1.00 5.16 ? 4 DG A N9 1
ATOM 70 C C8 . DG A 1 4 ? 7.824 21.294 7.806 1.00 6.17 ? 4 DG A C8 1
ATOM 71 N N7 . DG A 1 4 ? 7.407 20.108 7.794 1.00 4.42 ? 4 DG A N7 1
ATOM 72 C C5 . DG A 1 4 ? 8.589 19.404 7.866 1.00 2.95 ? 4 DG A C5 1
ATOM 73 C C6 . DG A 1 4 ? 8.753 18.258 7.871 1.00 8.96 ? 4 DG A C6 1
ATOM 74 O O6 . DG A 1 4 ? 7.964 17.119 7.801 1.00 6.60 ? 4 DG A O6 1
ATOM 75 N N1 . DG A 1 4 ? 10.222 17.663 7.942 1.00 3.10 ? 4 DG A N1 1
ATOM 76 C C2 . DG A 1 4 ? 11.167 18.659 7.989 1.00 5.51 ? 4 DG A C2 1
ATOM 77 N N2 . DG A 1 4 ? 12.416 18.028 7.923 1.00 5.15 ? 4 DG A N2 1
ATOM 78 N N3 . DG A 1 4 ? 11.039 19.917 8.019 1.00 4.09 ? 4 DG A N3 1
ATOM 79 C C4 . DG A 1 4 ? 9.696 20.173 7.902 1.00 5.03 ? 4 DG A C4 1
ATOM 80 P P . DC A 1 5 ? 13.288 23.794 10.987 1.00 7.88 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 12.090 23.416 11.868 1.00 11.70 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 13.941 25.039 11.426 1.00 15.18 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 14.292 22.550 11.013 1.00 5.15 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 15.080 22.337 12.224 1.00 3.43 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 15.552 20.929 12.135 1.00 3.37 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 14.422 20.101 12.605 1.00 5.47 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 16.020 20.284 10.908 1.00 4.33 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 17.082 19.395 11.118 1.00 6.58 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 14.809 19.579 10.356 1.00 5.75 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 14.264 18.982 11.688 1.00 3.99 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 12.761 18.853 11.659 1.00 4.38 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 12.183 17.521 11.387 1.00 3.68 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 12.941 16.621 11.377 1.00 5.31 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 10.886 17.415 11.369 1.00 4.23 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 10.117 18.470 11.423 1.00 4.48 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 8.731 18.294 11.331 1.00 4.29 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 10.528 19.860 11.549 1.00 3.75 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 11.999 20.050 11.658 1.00 5.59 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 18.632 19.909 11.024 1.00 6.49 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 18.799 20.803 9.882 1.00 7.44 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 19.400 18.694 11.032 1.00 9.52 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 18.818 20.719 12.379 1.00 5.03 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 19.048 20.080 13.702 1.00 5.15 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 19.251 21.201 14.624 1.00 4.27 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 18.077 21.989 14.681 1.00 5.00 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 19.506 20.702 16.026 1.00 3.69 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 20.463 21.616 16.681 1.00 5.67 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 18.185 20.768 16.788 1.00 6.54 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 17.494 21.999 15.999 1.00 5.37 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 16.164 21.966 15.946 1.00 5.55 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 15.382 23.102 15.987 1.00 6.18 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 13.968 22.887 15.825 1.00 5.40 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 13.924 21.450 15.594 1.00 5.23 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 12.859 20.622 15.438 1.00 3.25 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 11.706 20.972 15.440 1.00 6.14 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 13.195 19.281 15.322 1.00 5.07 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.579 18.746 15.297 1.00 6.53 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 14.752 17.469 15.076 1.00 5.10 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 15.575 19.620 15.515 1.00 5.68 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 15.304 20.923 15.673 1.00 5.14 ? 6 DG A C4 1
ATOM 121 O "O5'" . DC B 1 1 ? 7.270 12.782 15.355 1.00 11.91 ? 7 DC B "O5'" 1
ATOM 122 C "C5'" . DC B 1 1 ? 7.892 11.837 14.218 1.00 8.30 ? 7 DC B "C5'" 1
ATOM 123 C "C4'" . DC B 1 1 ? 9.312 12.039 14.257 1.00 4.14 ? 7 DC B "C4'" 1
ATOM 124 O "O4'" . DC B 1 1 ? 9.683 13.173 13.730 1.00 4.43 ? 7 DC B "O4'" 1
ATOM 125 C "C3'" . DC B 1 1 ? 10.087 11.794 15.541 1.00 5.23 ? 7 DC B "C3'" 1
ATOM 126 O "O3'" . DC B 1 1 ? 11.292 11.137 15.355 1.00 3.61 ? 7 DC B "O3'" 1
ATOM 127 C "C2'" . DC B 1 1 ? 10.417 13.145 16.045 1.00 4.25 ? 7 DC B "C2'" 1
ATOM 128 C "C1'" . DC B 1 1 ? 10.658 13.787 14.651 1.00 3.79 ? 7 DC B "C1'" 1
ATOM 129 N N1 . DC B 1 1 ? 10.265 15.260 14.635 1.00 4.53 ? 7 DC B N1 1
ATOM 130 C C2 . DC B 1 1 ? 11.298 16.229 14.816 1.00 5.39 ? 7 DC B C2 1
ATOM 131 O O2 . DC B 1 1 ? 12.484 15.797 14.833 1.00 5.19 ? 7 DC B O2 1
ATOM 132 N N3 . DC B 1 1 ? 10.986 17.519 14.813 1.00 5.26 ? 7 DC B N3 1
ATOM 133 C C4 . DC B 1 1 ? 9.682 18.066 14.763 1.00 4.98 ? 7 DC B C4 1
ATOM 134 N N4 . DC B 1 1 ? 9.569 19.232 14.879 1.00 6.20 ? 7 DC B N4 1
ATOM 135 C C5 . DC B 1 1 ? 8.678 17.180 14.612 1.00 6.90 ? 7 DC B C5 1
ATOM 136 C C6 . DC B 1 1 ? 8.885 15.847 14.546 1.00 9.66 ? 7 DC B C6 1
ATOM 137 P P . DG B 1 2 ? 11.515 9.525 15.428 1.00 4.64 ? 8 DG B P 1
ATOM 138 O OP1 . DG B 1 2 ? 10.690 8.954 16.504 1.00 5.69 ? 8 DG B OP1 1
ATOM 139 O OP2 . DG B 1 2 ? 12.948 9.266 15.398 1.00 5.78 ? 8 DG B OP2 1
ATOM 140 O "O5'" . DG B 1 2 ? 10.906 9.015 14.083 1.00 4.22 ? 8 DG B "O5'" 1
ATOM 141 C "C5'" . DG B 1 2 ? 11.515 9.416 12.831 1.00 3.42 ? 8 DG B "C5'" 1
ATOM 142 C "C4'" . DG B 1 2 ? 10.622 8.881 11.688 1.00 4.63 ? 8 DG B "C4'" 1
ATOM 143 O "O4'" . DG B 1 2 ? 9.272 9.449 11.753 1.00 3.97 ? 8 DG B "O4'" 1
ATOM 144 C "C3'" . DG B 1 2 ? 11.146 9.305 10.352 1.00 6.71 ? 8 DG B "C3'" 1
ATOM 145 O "O3'" . DG B 1 2 ? 11.937 8.288 9.787 1.00 4.03 ? 8 DG B "O3'" 1
ATOM 146 C "C2'" . DG B 1 2 ? 9.739 9.505 9.412 1.00 5.93 ? 8 DG B "C2'" 1
ATOM 147 C "C1'" . DG B 1 2 ? 8.732 9.742 10.510 1.00 3.71 ? 8 DG B "C1'" 1
ATOM 148 N N9 . DG B 1 2 ? 8.310 11.071 10.458 1.00 4.09 ? 8 DG B N9 1
ATOM 149 C C8 . DG B 1 2 ? 6.972 11.338 10.412 1.00 5.32 ? 8 DG B C8 1
ATOM 150 N N7 . DG B 1 2 ? 6.778 12.732 10.610 1.00 4.06 ? 8 DG B N7 1
ATOM 151 C C5 . DG B 1 2 ? 7.980 13.262 10.705 1.00 5.00 ? 8 DG B C5 1
ATOM 152 C C6 . DG B 1 2 ? 8.415 14.734 10.945 1.00 3.76 ? 8 DG B C6 1
ATOM 153 O O6 . DG B 1 2 ? 7.761 15.647 11.058 1.00 5.88 ? 8 DG B O6 1
ATOM 154 N N1 . DG B 1 2 ? 9.872 14.658 10.973 1.00 4.18 ? 8 DG B N1 1
ATOM 155 C C2 . DG B 1 2 ? 10.743 13.601 10.980 1.00 4.44 ? 8 DG B C2 1
ATOM 156 N N2 . DG B 1 2 ? 12.042 13.903 11.132 1.00 4.82 ? 8 DG B N2 1
ATOM 157 N N3 . DG B 1 2 ? 10.322 12.384 10.823 1.00 2.97 ? 8 DG B N3 1
ATOM 158 C C4 . DG B 1 2 ? 8.943 12.270 10.670 1.00 4.52 ? 8 DG B C4 1
ATOM 159 P P . DC B 1 3 ? 13.453 8.503 9.497 1.00 4.39 ? 9 DC B P 1
ATOM 160 O OP1 . DC B 1 3 ? 13.978 7.223 9.218 1.00 4.54 ? 9 DC B OP1 1
ATOM 161 O OP2 . DC B 1 3 ? 14.071 9.257 10.566 1.00 6.53 ? 9 DC B OP2 1
ATOM 162 O "O5'" . DC B 1 3 ? 13.420 9.418 8.190 1.00 4.79 ? 9 DC B "O5'" 1
ATOM 163 C "C5'" . DC B 1 3 ? 14.389 9.349 7.145 1.00 4.61 ? 9 DC B "C5'" 1
ATOM 164 C "C4'" . DC B 1 3 ? 14.941 10.730 6.893 1.00 3.36 ? 9 DC B "C4'" 1
ATOM 165 O "O4'" . DC B 1 3 ? 13.962 11.524 6.362 1.00 3.90 ? 9 DC B "O4'" 1
ATOM 166 C "C3'" . DC B 1 3 ? 15.557 11.388 8.042 1.00 5.10 ? 9 DC B "C3'" 1
ATOM 167 O "O3'" . DC B 1 3 ? 16.674 12.234 7.685 1.00 4.77 ? 9 DC B "O3'" 1
ATOM 168 C "C2'" . DC B 1 3 ? 14.397 12.416 8.523 1.00 3.93 ? 9 DC B "C2'" 1
ATOM 169 C "C1'" . DC B 1 3 ? 13.995 12.776 7.088 1.00 5.00 ? 9 DC B "C1'" 1
ATOM 170 N N1 . DC B 1 3 ? 12.454 13.190 7.157 1.00 4.47 ? 9 DC B N1 1
ATOM 171 C C2 . DC B 1 3 ? 12.111 14.503 7.320 1.00 4.56 ? 9 DC B C2 1
ATOM 172 O O2 . DC B 1 3 ? 13.036 15.276 7.527 1.00 4.62 ? 9 DC B O2 1
ATOM 173 N N3 . DC B 1 3 ? 10.773 14.833 7.402 1.00 4.97 ? 9 DC B N3 1
ATOM 174 C C4 . DC B 1 3 ? 9.802 13.979 7.297 1.00 4.08 ? 9 DC B C4 1
ATOM 175 N N4 . DC B 1 3 ? 8.489 14.393 7.414 1.00 7.05 ? 9 DC B N4 1
ATOM 176 C C5 . DC B 1 3 ? 10.096 12.525 7.116 1.00 6.04 ? 9 DC B C5 1
ATOM 177 C C6 . DC B 1 3 ? 11.412 12.187 7.098 1.00 7.05 ? 9 DC B C6 1
ATOM 178 P P . DG B 1 4 ? 18.139 11.716 7.744 1.00 6.17 ? 10 DG B P 1
ATOM 179 O OP1 . DG B 1 4 ? 18.333 10.954 9.028 1.00 7.88 ? 10 DG B OP1 1
ATOM 180 O OP2 . DG B 1 4 ? 19.003 12.945 7.441 1.00 8.57 ? 10 DG B OP2 1
ATOM 181 O "O5'" . DG B 1 4 ? 18.330 10.705 6.573 1.00 4.87 ? 10 DG B "O5'" 1
ATOM 182 C "C5'" . DG B 1 4 ? 18.213 11.230 5.117 1.00 6.31 ? 10 DG B "C5'" 1
ATOM 183 C "C4'" . DG B 1 4 ? 18.297 10.040 4.206 1.00 5.25 ? 10 DG B "C4'" 1
ATOM 184 O "O4'" . DG B 1 4 ? 17.285 9.200 4.444 1.00 5.35 ? 10 DG B "O4'" 1
ATOM 185 C "C3'" . DG B 1 4 ? 18.109 10.502 2.694 1.00 5.26 ? 10 DG B "C3'" 1
ATOM 186 O "O3'" . DG B 1 4 ? 19.565 10.680 2.220 1.00 5.61 ? 10 DG B "O3'" 1
ATOM 187 C "C2'" . DG B 1 4 ? 17.543 9.520 1.901 1.00 7.23 ? 10 DG B "C2'" 1
ATOM 188 C "C1'" . DG B 1 4 ? 16.828 8.745 3.202 1.00 8.30 ? 10 DG B "C1'" 1
ATOM 189 N N9 . DG B 1 4 ? 15.254 9.123 3.264 1.00 6.39 ? 10 DG B N9 1
ATOM 190 C C8 . DG B 1 4 ? 14.431 8.139 3.266 1.00 9.13 ? 10 DG B C8 1
ATOM 191 N N7 . DG B 1 4 ? 13.265 8.591 3.447 1.00 7.13 ? 10 DG B N7 1
ATOM 192 C C5 . DG B 1 4 ? 13.282 9.929 3.431 1.00 4.13 ? 10 DG B C5 1
ATOM 193 C C6 . DG B 1 4 ? 12.360 10.970 3.526 1.00 8.15 ? 10 DG B C6 1
ATOM 194 O O6 . DG B 1 4 ? 11.100 10.815 3.619 1.00 5.74 ? 10 DG B O6 1
ATOM 195 N N1 . DG B 1 4 ? 13.007 12.182 3.517 1.00 3.52 ? 10 DG B N1 1
ATOM 196 C C2 . DG B 1 4 ? 14.342 12.378 3.440 1.00 5.52 ? 10 DG B C2 1
ATOM 197 N N2 . DG B 1 4 ? 14.706 13.690 3.507 1.00 6.25 ? 10 DG B N2 1
ATOM 198 N N3 . DG B 1 4 ? 15.165 11.408 3.359 1.00 4.14 ? 10 DG B N3 1
ATOM 199 C C4 . DG B 1 4 ? 14.628 10.224 3.229 1.00 5.70 ? 10 DG B C4 1
ATOM 200 P P . DC B 1 5 ? 20.133 12.096 1.725 1.00 6.27 ? 11 DC B P 1
ATOM 201 O OP1 . DC B 1 5 ? 21.491 11.771 1.270 1.00 7.15 ? 11 DC B OP1 1
ATOM 202 O OP2 . DC B 1 5 ? 19.904 13.084 2.792 1.00 8.03 ? 11 DC B OP2 1
ATOM 203 O "O5'" . DC B 1 5 ? 19.221 12.455 0.530 1.00 5.64 ? 11 DC B "O5'" 1
ATOM 204 C "C5'" . DC B 1 5 ? 19.612 13.163 -0.700 1.00 5.81 ? 11 DC B "C5'" 1
ATOM 205 C "C4'" . DC B 1 5 ? 18.814 14.188 -1.031 1.00 5.55 ? 11 DC B "C4'" 1
ATOM 206 O "O4'" . DC B 1 5 ? 17.560 13.819 -1.330 1.00 5.29 ? 11 DC B "O4'" 1
ATOM 207 C "C3'" . DC B 1 5 ? 18.598 15.278 0.412 1.00 7.12 ? 11 DC B "C3'" 1
ATOM 208 O "O3'" . DC B 1 5 ? 18.533 16.578 -0.261 1.00 6.69 ? 11 DC B "O3'" 1
ATOM 209 C "C2'" . DC B 1 5 ? 17.148 14.612 0.886 1.00 16.60 ? 11 DC B "C2'" 1
ATOM 210 C "C1'" . DC B 1 5 ? 16.519 14.395 -0.549 1.00 7.32 ? 11 DC B "C1'" 1
ATOM 211 N N1 . DC B 1 5 ? 15.387 13.431 -0.347 1.00 5.60 ? 11 DC B N1 1
ATOM 212 C C2 . DC B 1 5 ? 14.151 13.958 -0.076 1.00 6.71 ? 11 DC B C2 1
ATOM 213 O O2 . DC B 1 5 ? 13.894 15.149 -0.041 1.00 7.80 ? 11 DC B O2 1
ATOM 214 N N3 . DC B 1 5 ? 13.172 12.883 0.046 1.00 6.96 ? 11 DC B N3 1
ATOM 215 C C4 . DC B 1 5 ? 13.331 11.447 -0.064 1.00 11.52 ? 11 DC B C4 1
ATOM 216 N N4 . DC B 1 5 ? 12.411 10.691 0.049 1.00 7.50 ? 11 DC B N4 1
ATOM 217 C C5 . DC B 1 5 ? 14.783 11.057 -0.276 1.00 6.68 ? 11 DC B C5 1
ATOM 218 C C6 . DC B 1 5 ? 15.610 12.163 -0.391 1.00 10.39 ? 11 DC B C6 1
ATOM 219 P P . DG B 1 6 ? 19.814 17.491 -0.172 1.00 7.12 ? 12 DG B P 1
ATOM 220 O OP1 . DG B 1 6 ? 20.390 17.396 1.168 1.00 10.42 ? 12 DG B OP1 1
ATOM 221 O OP2 . DG B 1 6 ? 19.350 18.889 -0.537 1.00 8.46 ? 12 DG B OP2 1
ATOM 222 O "O5'" . DG B 1 6 ? 20.813 16.910 -1.177 1.00 6.37 ? 12 DG B "O5'" 1
ATOM 223 C "C5'" . DG B 1 6 ? 20.706 17.097 -2.583 1.00 6.49 ? 12 DG B "C5'" 1
ATOM 224 C "C4'" . DG B 1 6 ? 21.802 16.407 -3.257 1.00 6.21 ? 12 DG B "C4'" 1
ATOM 225 O "O4'" . DG B 1 6 ? 21.485 14.971 -3.227 1.00 5.24 ? 12 DG B "O4'" 1
ATOM 226 C "C3'" . DG B 1 6 ? 21.840 16.764 -4.864 1.00 8.59 ? 12 DG B "C3'" 1
ATOM 227 O "O3'" . DG B 1 6 ? 23.137 16.496 -5.347 1.00 8.29 ? 12 DG B "O3'" 1
ATOM 228 C "C2'" . DG B 1 6 ? 20.862 15.684 -5.428 1.00 5.42 ? 12 DG B "C2'" 1
ATOM 229 C "C1'" . DG B 1 6 ? 21.315 14.411 -4.580 1.00 6.78 ? 12 DG B "C1'" 1
ATOM 230 N N9 . DG B 1 6 ? 20.284 13.408 -4.471 1.00 3.92 ? 12 DG B N9 1
ATOM 231 C C8 . DG B 1 6 ? 20.544 12.028 -4.383 1.00 4.53 ? 12 DG B C8 1
ATOM 232 N N7 . DG B 1 6 ? 19.539 11.269 -4.306 1.00 6.03 ? 12 DG B N7 1
ATOM 233 C C5 . DG B 1 6 ? 18.512 12.219 -4.198 1.00 4.34 ? 12 DG B C5 1
ATOM 234 C C6 . DG B 1 6 ? 17.141 11.913 -3.982 1.00 5.86 ? 12 DG B C6 1
ATOM 235 O O6 . DG B 1 6 ? 16.528 10.792 -3.861 1.00 5.46 ? 12 DG B O6 1
ATOM 236 N N1 . DG B 1 6 ? 16.419 13.065 -4.054 1.00 4.65 ? 12 DG B N1 1
ATOM 237 C C2 . DG B 1 6 ? 16.934 14.363 -4.244 1.00 4.58 ? 12 DG B C2 1
ATOM 238 N N2 . DG B 1 6 ? 16.073 15.327 -4.089 1.00 5.53 ? 12 DG B N2 1
ATOM 239 N N3 . DG B 1 6 ? 18.231 14.645 -4.295 1.00 3.34 ? 12 DG B N3 1
ATOM 240 C C4 . DG B 1 6 ? 18.865 13.570 -4.275 1.00 4.91 ? 12 DG B C4 1
HETATM 241 MG MG . MG C 2 . ? 1.916 24.290 0.224 1.00 55.17 ? 104 MG A MG 1
HETATM 242 N N1 . 104 D 3 . ? 15.863 17.747 3.422 1.00 22.76 ? 13 104 A N1 1
HETATM 243 C C2 . 104 D 3 . ? 15.127 17.689 4.764 1.00 21.06 ? 13 104 A C2 1
HETATM 244 C C3 . 104 D 3 . ? 15.073 16.807 6.007 1.00 15.01 ? 13 104 A C3 1
HETATM 245 N N4 . 104 D 3 . ? 16.459 16.963 6.623 1.00 49.11 ? 13 104 A N4 1
HETATM 246 C C5 . 104 D 3 . ? 17.882 16.647 7.136 1.00 4.10 ? 13 104 A C5 1
HETATM 247 C C6 . 104 D 3 . ? 18.989 17.221 7.995 1.00 30.44 ? 13 104 A C6 1
HETATM 248 N N7 . 104 D 3 . ? 18.213 16.689 9.226 1.00 28.74 ? 13 104 A N7 1
HETATM 249 C C8 . 104 D 3 . ? 17.347 15.777 10.318 1.00 37.00 ? 13 104 A C8 1
HETATM 250 C C9 . 104 D 3 . ? 15.737 15.696 10.482 1.00 9.80 ? 13 104 A C9 1
HETATM 251 N N10 . 104 D 3 . ? 14.977 15.676 9.210 1.00 18.09 ? 13 104 A N10 1
HETATM 252 N N1 . 104 E 3 . ? 5.543 8.627 6.477 1.00 4.44 ? 14 104 B N1 1
HETATM 253 C C2 . 104 E 3 . ? 5.984 8.423 7.905 1.00 10.36 ? 14 104 B C2 1
HETATM 254 C C3 . 104 E 3 . ? 7.022 7.498 8.267 1.00 9.61 ? 14 104 B C3 1
HETATM 255 N N4 . 104 E 3 . ? 7.933 6.604 7.503 1.00 38.68 ? 14 104 B N4 1
HETATM 256 C C5 . 104 E 3 . ? 9.241 6.290 8.180 1.00 10.56 ? 14 104 B C5 1
HETATM 257 C C6 . 104 E 3 . ? 10.494 6.306 7.344 1.00 20.04 ? 14 104 B C6 1
HETATM 258 N N7 . 104 E 3 . ? 11.116 4.913 7.354 1.00 17.16 ? 14 104 B N7 1
HETATM 259 C C8 . 104 E 3 . ? 11.728 3.664 7.918 1.00 9.63 ? 14 104 B C8 1
HETATM 260 C C9 . 104 E 3 . ? 12.981 2.934 7.442 1.00 19.84 ? 14 104 B C9 1
HETATM 261 N N10 . 104 E 3 . ? 13.401 1.825 8.365 1.00 14.53 ? 14 104 B N10 1
HETATM 262 O O . HOH F 4 . ? 3.425 12.774 4.986 1.00 24.17 ? 17 HOH A O 1
HETATM 263 O O . HOH F 4 . ? 3.203 26.774 5.379 1.00 25.90 ? 21 HOH A O 1
HETATM 264 O O . HOH F 4 . ? 3.786 29.457 6.660 1.00 8.23 ? 26 HOH A O 1
HETATM 265 O O . HOH F 4 . ? 0.560 21.967 6.134 1.00 30.00 ? 27 HOH A O 1
HETATM 266 O O . HOH F 4 . ? 8.222 17.837 -8.051 1.00 20.84 ? 31 HOH A O 1
HETATM 267 O O . HOH F 4 . ? 5.981 16.866 -7.892 1.00 27.82 ? 33 HOH A O 1
HETATM 268 O O . HOH F 4 . ? 1.560 30.096 8.093 1.00 28.38 ? 34 HOH A O 1
HETATM 269 O O . HOH F 4 . ? 6.257 20.726 -7.448 1.00 26.74 ? 35 HOH A O 1
HETATM 270 O O . HOH F 4 . ? 4.983 19.728 -8.557 1.00 40.22 ? 36 HOH A O 1
HETATM 271 O O . HOH F 4 . ? 9.811 24.520 4.895 1.00 13.51 ? 37 HOH A O 1
HETATM 272 O O . HOH F 4 . ? 8.528 28.740 2.829 1.00 16.61 ? 39 HOH A O 1
HETATM 273 O O . HOH F 4 . ? 6.056 27.855 2.680 1.00 19.72 ? 40 HOH A O 1
HETATM 274 O O . HOH F 4 . ? 2.494 22.823 5.103 1.00 66.64 ? 41 HOH A O 1
HETATM 275 O O . HOH F 4 . ? 3.539 15.155 2.778 1.00 11.79 ? 42 HOH A O 1
HETATM 276 O O . HOH F 4 . ? 2.440 27.496 3.028 1.00 7.44 ? 43 HOH A O 1
HETATM 277 O O . HOH F 4 . ? 2.115 28.830 6.367 1.00 31.25 ? 44 HOH A O 1
HETATM 278 O O . HOH F 4 . ? 1.781 19.351 5.099 1.00 24.45 ? 45 HOH A O 1
HETATM 279 O O . HOH F 4 . ? -0.617 20.871 3.459 1.00 32.59 ? 46 HOH A O 1
HETATM 280 O O . HOH F 4 . ? -0.321 14.443 3.922 1.00 8.00 ? 47 HOH A O 1
HETATM 281 O O . HOH F 4 . ? 4.167 29.517 3.998 1.00 7.89 ? 49 HOH A O 1
HETATM 282 O O . HOH F 4 . ? 6.088 22.455 4.394 1.00 10.53 ? 50 HOH A O 1
HETATM 283 O O . HOH F 4 . ? 10.578 24.188 2.345 1.00 32.60 ? 51 HOH A O 1
HETATM 284 O O . HOH F 4 . ? 5.298 15.384 4.610 1.00 15.65 ? 53 HOH A O 1
HETATM 285 O O . HOH F 4 . ? 6.389 17.523 5.406 1.00 15.65 ? 54 HOH A O 1
HETATM 286 O O . HOH F 4 . ? 8.252 10.217 2.027 1.00 13.71 ? 55 HOH A O 1
HETATM 287 O O . HOH F 4 . ? 2.134 27.849 0.288 1.00 9.46 ? 56 HOH A O 1
HETATM 288 O O . HOH F 4 . ? 8.260 10.288 -1.655 1.00 34.98 ? 57 HOH A O 1
HETATM 289 O O . HOH F 4 . ? 8.447 26.587 -0.947 1.00 25.83 ? 58 HOH A O 1
HETATM 290 O O . HOH F 4 . ? 13.806 19.641 0.132 1.00 20.15 ? 59 HOH A O 1
HETATM 291 O O . HOH F 4 . ? 6.392 25.112 3.372 1.00 25.74 ? 61 HOH A O 1
HETATM 292 O O . HOH F 4 . ? 5.765 28.983 0.270 1.00 44.59 ? 64 HOH A O 1
HETATM 293 O O . HOH F 4 . ? 7.498 24.231 0.543 1.00 55.80 ? 65 HOH A O 1
HETATM 294 O O . HOH F 4 . ? 4.006 22.354 8.461 1.00 36.09 ? 68 HOH A O 1
HETATM 295 O O . HOH F 4 . ? 15.073 19.273 6.870 1.00 12.61 ? 72 HOH A O 1
HETATM 296 O O . HOH F 4 . ? 7.820 25.262 2.817 1.00 30.93 ? 73 HOH A O 1
HETATM 297 O O . HOH F 4 . ? 11.181 26.766 4.985 1.00 31.01 ? 74 HOH A O 1
HETATM 298 O O . HOH F 4 . ? 15.819 25.055 6.392 1.00 28.15 ? 75 HOH A O 1
HETATM 299 O O . HOH F 4 . ? 3.560 18.822 7.563 1.00 31.37 ? 79 HOH A O 1
HETATM 300 O O . HOH F 4 . ? 14.601 17.106 1.909 1.00 13.81 ? 81 HOH A O 1
HETATM 301 O O . HOH F 4 . ? 3.977 24.782 1.689 1.00 46.76 ? 82 HOH A O 1
HETATM 302 O O . HOH F 4 . ? 6.479 24.813 -0.046 1.00 51.02 ? 83 HOH A O 1
HETATM 303 O O . HOH F 4 . ? 10.834 25.359 -0.600 1.00 27.28 ? 84 HOH A O 1
HETATM 304 O O . HOH F 4 . ? 13.657 26.661 3.666 1.00 14.84 ? 85 HOH A O 1
HETATM 305 O O . HOH F 4 . ? 6.218 13.114 3.981 1.00 18.09 ? 86 HOH A O 1
HETATM 306 O O . HOH F 4 . ? 4.629 17.659 2.378 1.00 28.88 ? 87 HOH A O 1
HETATM 307 O O . HOH F 4 . ? 3.419 19.913 2.918 1.00 20.96 ? 88 HOH A O 1
HETATM 308 O O . HOH F 4 . ? 2.812 16.576 5.485 1.00 29.88 ? 89 HOH A O 1
HETATM 309 O O . HOH F 4 . ? 0.761 17.458 3.153 1.00 34.13 ? 90 HOH A O 1
HETATM 310 O O . HOH F 4 . ? 5.164 19.840 4.933 1.00 18.17 ? 91 HOH A O 1
HETATM 311 O O . HOH F 4 . ? 3.098 22.783 3.048 1.00 27.51 ? 92 HOH A O 1
HETATM 312 O O . HOH F 4 . ? 3.222 20.859 6.836 1.00 41.66 ? 93 HOH A O 1
HETATM 313 O O . HOH F 4 . ? 4.287 15.286 7.128 1.00 37.46 ? 97 HOH A O 1
HETATM 314 O O . HOH F 4 . ? -0.321 24.116 9.103 1.00 54.52 ? 99 HOH A O 1
HETATM 315 O O . HOH F 4 . ? 1.730 29.097 10.666 1.00 11.40 ? 101 HOH A O 1
HETATM 316 O O . HOH F 4 . ? 3.407 27.035 7.754 1.00 5.98 ? 102 HOH A O 1
HETATM 317 O O . HOH F 4 . ? 4.173 27.596 9.718 1.00 47.86 ? 103 HOH A O 1
HETATM 318 O O . HOH G 4 . ? 17.916 14.886 6.602 1.00 42.87 ? 15 HOH B O 1
HETATM 319 O O . HOH G 4 . ? 4.212 14.047 10.281 1.00 12.99 ? 16 HOH B O 1
HETATM 320 O O . HOH G 4 . ? 5.581 16.145 9.350 1.00 20.57 ? 18 HOH B O 1
HETATM 321 O O . HOH G 4 . ? 5.931 16.061 12.803 1.00 23.33 ? 19 HOH B O 1
HETATM 322 O O . HOH G 4 . ? 4.421 10.072 7.620 1.00 36.04 ? 20 HOH B O 1
HETATM 323 O O . HOH G 4 . ? 2.150 14.666 9.358 1.00 27.00 ? 22 HOH B O 1
HETATM 324 O O . HOH G 4 . ? 6.400 12.591 6.869 1.00 14.01 ? 23 HOH B O 1
HETATM 325 O O . HOH G 4 . ? 7.268 10.018 6.476 1.00 13.23 ? 24 HOH B O 1
HETATM 326 O O . HOH G 4 . ? 9.506 7.074 4.859 1.00 40.87 ? 25 HOH B O 1
HETATM 327 O O . HOH G 4 . ? 18.035 0.924 7.852 1.00 11.88 ? 28 HOH B O 1
HETATM 328 O O . HOH G 4 . ? 14.580 1.152 11.186 1.00 26.70 ? 29 HOH B O 1
HETATM 329 O O . HOH G 4 . ? 15.471 1.485 6.537 1.00 9.96 ? 30 HOH B O 1
HETATM 330 O O . HOH G 4 . ? 2.664 13.582 12.824 1.00 32.39 ? 32 HOH B O 1
HETATM 331 O O . HOH G 4 . ? 3.225 8.017 2.778 1.00 27.45 ? 38 HOH B O 1
HETATM 332 O O . HOH G 4 . ? 14.943 4.440 3.306 1.00 9.34 ? 48 HOH B O 1
HETATM 333 O O . HOH G 4 . ? 11.310 6.919 2.198 1.00 26.32 ? 52 HOH B O 1
HETATM 334 O O . HOH G 4 . ? 13.076 5.204 1.152 1.00 17.59 ? 60 HOH B O 1
HETATM 335 O O . HOH G 4 . ? 9.534 9.506 1.782 1.00 34.04 ? 62 HOH B O 1
HETATM 336 O O . HOH G 4 . ? 13.287 7.880 -0.245 1.00 24.60 ? 63 HOH B O 1
HETATM 337 O O . HOH G 4 . ? 15.997 7.721 -0.559 1.00 30.14 ? 66 HOH B O 1
HETATM 338 O O . HOH G 4 . ? 9.763 9.314 5.532 1.00 16.41 ? 67 HOH B O 1
HETATM 339 O O . HOH G 4 . ? 4.423 9.568 4.767 1.00 14.50 ? 69 HOH B O 1
HETATM 340 O O . HOH G 4 . ? 6.691 7.631 4.925 1.00 17.82 ? 70 HOH B O 1
HETATM 341 O O . HOH G 4 . ? 8.455 6.230 1.572 1.00 12.70 ? 71 HOH B O 1
HETATM 342 O O . HOH G 4 . ? 13.194 5.610 11.336 1.00 14.63 ? 76 HOH B O 1
HETATM 343 O O . HOH G 4 . ? 10.605 5.154 10.525 1.00 9.60 ? 77 HOH B O 1
HETATM 344 O O . HOH G 4 . ? 13.052 5.981 6.891 1.00 6.08 ? 78 HOH B O 1
HETATM 345 O O . HOH G 4 . ? 18.692 9.722 13.737 1.00 16.09 ? 94 HOH B O 1
HETATM 346 O O . HOH G 4 . ? 13.766 2.951 10.627 1.00 27.91 ? 95 HOH B O 1
HETATM 347 O O . HOH G 4 . ? 18.194 11.903 11.768 1.00 30.67 ? 96 HOH B O 1
HETATM 348 O O . HOH G 4 . ? 3.835 12.291 7.992 1.00 15.93 ? 98 HOH B O 1
HETATM 349 O O . HOH G 4 . ? 16.883 8.811 12.627 1.00 11.71 ? 100 HOH B O 1
#