data_1D97
#
_entry.id 1D97
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1D97 pdb_00001d97 10.2210/pdb1d97/pdb
RCSB BDFP24 ? ?
WWPDB D_1000172692 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1993-07-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1D97
_pdbx_database_status.recvd_initial_deposition_date 1992-10-17
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Cruse, W.B.T.' 1
'Salisbury, S.A.' 2
'Brown, T.' 3
'Cosstick, R.' 4
'Eckstein, F.' 5
'Kennard, O.' 6
#
_citation.id primary
_citation.title
'Chiral phosphorothioate analogues of B-DNA. The crystal structure of Rp-d[Gp(S)CpGp(S)CpGp(S)C].'
_citation.journal_abbrev J.Mol.Biol.
_citation.journal_volume 192
_citation.page_first 891
_citation.page_last 905
_citation.year 1986
_citation.journal_id_ASTM JMOBAK
_citation.country UK
_citation.journal_id_ISSN 0022-2836
_citation.journal_id_CSD 0070
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 3108513
_citation.pdbx_database_id_DOI '10.1016/0022-2836(86)90035-5'
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Cruse, W.B.' 1 ?
primary 'Salisbury, S.A.' 2 ?
primary 'Brown, T.' 3 ?
primary 'Cosstick, R.' 4 ?
primary 'Eckstein, F.' 5 ?
primary 'Kennard, O.' 6 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(RP*GP*(SC)P*GP*(SC)P*GP*(SC))-3')
;
1858.403 2 ? ? ? ?
2 water nat water 18.015 72 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(SC)(DG)(SC)(DG)(SC)'
_entity_poly.pdbx_seq_one_letter_code_can GCGCGC
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 SC n
1 3 DG n
1 4 SC n
1 5 DG n
1 6 SC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
SC 'DNA linking' n "2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE" ? 'C9 H14 N3 O6 P S' 323.263
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 SC 2 2 2 SC +C A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 SC 4 4 4 SC +C A . n
A 1 5 DG 5 5 5 DG G A . n
A 1 6 SC 6 6 6 SC +C A . n
B 1 1 DG 1 7 7 DG G B . n
B 1 2 SC 2 8 8 SC +C B . n
B 1 3 DG 3 9 9 DG G B . n
B 1 4 SC 4 10 10 SC +C B . n
B 1 5 DG 5 11 11 DG G B . n
B 1 6 SC 6 12 12 SC +C B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HOH 1 13 13 HOH HOH A .
C 2 HOH 2 14 14 HOH HOH A .
C 2 HOH 3 15 15 HOH HOH A .
C 2 HOH 4 17 17 HOH HOH A .
C 2 HOH 5 21 21 HOH HOH A .
C 2 HOH 6 25 25 HOH HOH A .
C 2 HOH 7 27 27 HOH HOH A .
C 2 HOH 8 29 29 HOH HOH A .
C 2 HOH 9 30 30 HOH HOH A .
C 2 HOH 10 34 34 HOH HOH A .
C 2 HOH 11 35 35 HOH HOH A .
C 2 HOH 12 37 37 HOH HOH A .
C 2 HOH 13 38 38 HOH HOH A .
C 2 HOH 14 41 41 HOH HOH A .
C 2 HOH 15 43 43 HOH HOH A .
C 2 HOH 16 44 44 HOH HOH A .
C 2 HOH 17 45 45 HOH HOH A .
C 2 HOH 18 46 46 HOH HOH A .
C 2 HOH 19 47 47 HOH HOH A .
C 2 HOH 20 58 58 HOH HOH A .
C 2 HOH 21 59 59 HOH HOH A .
C 2 HOH 22 65 65 HOH HOH A .
C 2 HOH 23 67 67 HOH HOH A .
C 2 HOH 24 68 68 HOH HOH A .
C 2 HOH 25 71 71 HOH HOH A .
C 2 HOH 26 73 73 HOH HOH A .
C 2 HOH 27 74 74 HOH HOH A .
C 2 HOH 28 76 76 HOH HOH A .
C 2 HOH 29 78 78 HOH HOH A .
C 2 HOH 30 79 79 HOH HOH A .
C 2 HOH 31 80 80 HOH HOH A .
C 2 HOH 32 81 81 HOH HOH A .
C 2 HOH 33 84 84 HOH HOH A .
D 2 HOH 1 16 16 HOH HOH B .
D 2 HOH 2 18 18 HOH HOH B .
D 2 HOH 3 19 19 HOH HOH B .
D 2 HOH 4 20 20 HOH HOH B .
D 2 HOH 5 22 22 HOH HOH B .
D 2 HOH 6 23 23 HOH HOH B .
D 2 HOH 7 24 24 HOH HOH B .
D 2 HOH 8 26 26 HOH HOH B .
D 2 HOH 9 28 28 HOH HOH B .
D 2 HOH 10 31 31 HOH HOH B .
D 2 HOH 11 32 32 HOH HOH B .
D 2 HOH 12 33 33 HOH HOH B .
D 2 HOH 13 36 36 HOH HOH B .
D 2 HOH 14 39 39 HOH HOH B .
D 2 HOH 15 40 40 HOH HOH B .
D 2 HOH 16 42 42 HOH HOH B .
D 2 HOH 17 48 48 HOH HOH B .
D 2 HOH 18 49 49 HOH HOH B .
D 2 HOH 19 50 50 HOH HOH B .
D 2 HOH 20 51 51 HOH HOH B .
D 2 HOH 21 52 52 HOH HOH B .
D 2 HOH 22 53 53 HOH HOH B .
D 2 HOH 23 54 54 HOH HOH B .
D 2 HOH 24 55 55 HOH HOH B .
D 2 HOH 25 56 56 HOH HOH B .
D 2 HOH 26 57 57 HOH HOH B .
D 2 HOH 27 60 60 HOH HOH B .
D 2 HOH 28 61 61 HOH HOH B .
D 2 HOH 29 62 62 HOH HOH B .
D 2 HOH 30 63 63 HOH HOH B .
D 2 HOH 31 64 64 HOH HOH B .
D 2 HOH 32 66 66 HOH HOH B .
D 2 HOH 33 69 69 HOH HOH B .
D 2 HOH 34 70 70 HOH HOH B .
D 2 HOH 35 72 72 HOH HOH B .
D 2 HOH 36 75 75 HOH HOH B .
D 2 HOH 37 77 77 HOH HOH B .
D 2 HOH 38 82 82 HOH HOH B .
D 2 HOH 39 83 83 HOH HOH B .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1D97
_cell.length_a 34.900
_cell.length_b 39.150
_cell.length_c 20.640
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1D97
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
#
_exptl.entry_id 1D97
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.90
_exptl_crystal.density_percent_sol 35.16
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 287.00
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, temperature 287.00K'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 ISOPROPANOL ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 MGCL2 ? ? ?
1 5 1 SPERMINE_HCL ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 291.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'SYNTEX P21'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source ?
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1D97
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 25.000
_reflns.d_resolution_high 2.170
_reflns.number_obs 1954
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1D97
_refine.ls_number_reflns_obs 1327
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 2.170
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.145
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 234
_refine_hist.pdbx_number_atoms_ligand 6
_refine_hist.number_atoms_solvent 72
_refine_hist.number_atoms_total 312
_refine_hist.d_res_high 2.170
_refine_hist.d_res_low 8.000
#
_database_PDB_matrix.entry_id 1D97
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1D97
_struct.title
'CHIRAL PHOSPHOROTHIOATE ANALOGUES OF B-DNA: THE CRYSTAL STRUCTURE OF RP-D(GP(S) CPGP(S)CPGP(S)C)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1D97
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'B-DNA, DOUBLE HELIX, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1D97
_struct_ref.pdbx_db_accession 1D97
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1D97 A 1 ? 6 ? 1D97 1 ? 6 ? 1 6
2 1 1D97 B 1 ? 6 ? 1D97 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A SC 2 P ? ? A DG 1 A SC 2 1_555 ? ? ? ? ? ? ? 1.606 ? ?
covale2 covale both ? A SC 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A SC 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.572 ? ?
covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A SC 4 P ? ? A DG 3 A SC 4 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale4 covale both ? A SC 4 "O3'" ? ? ? 1_555 A DG 5 P ? ? A SC 4 A DG 5 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale5 covale both ? A DG 5 "O3'" ? ? ? 1_555 A SC 6 P ? ? A DG 5 A SC 6 1_555 ? ? ? ? ? ? ? 1.606 ? ?
covale6 covale both ? B DG 1 "O3'" ? ? ? 1_555 B SC 2 P ? ? B DG 7 B SC 8 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale7 covale both ? B SC 2 "O3'" ? ? ? 1_555 B DG 3 P ? ? B SC 8 B DG 9 1_555 ? ? ? ? ? ? ? 1.639 ? ?
covale8 covale both ? B DG 3 "O3'" ? ? ? 1_555 B SC 4 P ? ? B DG 9 B SC 10 1_555 ? ? ? ? ? ? ? 1.613 ? ?
covale9 covale both ? B SC 4 "O3'" ? ? ? 1_555 B DG 5 P ? ? B SC 10 B DG 11 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale10 covale both ? B DG 5 "O3'" ? ? ? 1_555 B SC 6 P ? ? B DG 11 B SC 12 1_555 ? ? ? ? ? ? ? 1.647 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B SC 6 N3 ? ? A DG 1 B SC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B SC 6 O2 ? ? A DG 1 B SC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B SC 6 N4 ? ? A DG 1 B SC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A SC 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A SC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A SC 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A SC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A SC 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A SC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B SC 4 N3 ? ? A DG 3 B SC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B SC 4 O2 ? ? A DG 3 B SC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B SC 4 N4 ? ? A DG 3 B SC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A SC 4 N3 ? ? ? 1_555 B DG 3 N1 ? ? A SC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A SC 4 N4 ? ? ? 1_555 B DG 3 O6 ? ? A SC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A SC 4 O2 ? ? ? 1_555 B DG 3 N2 ? ? A SC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B SC 2 N3 ? ? A DG 5 B SC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B SC 2 O2 ? ? A DG 5 B SC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B SC 2 N4 ? ? A DG 5 B SC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A SC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A SC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A SC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A SC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A SC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A SC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 OP2 B DG 9 ? ? O B HOH 36 ? ? 2.03
2 1 O A HOH 21 ? ? O A HOH 37 ? ? 2.07
3 1 OP1 B DG 11 ? ? O B HOH 56 ? ? 2.12
4 1 O B HOH 53 ? ? O B HOH 57 ? ? 2.13
5 1 O B HOH 28 ? ? O B HOH 69 ? ? 2.13
6 1 OP1 B SC 12 ? ? O B HOH 57 ? ? 2.19
7 1 "O4'" B DG 7 ? ? O B HOH 75 ? ? 2.19
#
loop_
_pdbx_validate_symm_contact.id
_pdbx_validate_symm_contact.PDB_model_num
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_asym_id_1
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.PDB_ins_code_1
_pdbx_validate_symm_contact.label_alt_id_1
_pdbx_validate_symm_contact.site_symmetry_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_asym_id_2
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.PDB_ins_code_2
_pdbx_validate_symm_contact.label_alt_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_pdbx_validate_symm_contact.dist
1 1 OP1 A SC 6 ? ? 1_555 O A HOH 41 ? ? 3_555 1.92
2 1 O A HOH 59 ? ? 1_555 O A HOH 79 ? ? 2_454 2.00
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 OP1 A DG 3 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 109.74 119.60 -9.86 1.50 N
2 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 115.30 119.90 -4.60 0.70 N
3 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 100.35 105.90 -5.55 0.80 N
4 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 102.68 108.00 -5.32 0.70 N
5 1 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A SC 6 ? ? 127.26 119.70 7.56 1.20 Y
6 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 115.26 108.30 6.96 0.30 N
7 1 "C3'" B DG 9 ? ? "O3'" B DG 9 ? ? P B SC 10 ? ? 128.00 119.70 8.30 1.20 Y
8 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? "C2'" B DG 11 ? ? 100.79 105.90 -5.11 0.80 N
#
_pdbx_validate_chiral.id 1
_pdbx_validate_chiral.PDB_model_num 1
_pdbx_validate_chiral.auth_atom_id "C4'"
_pdbx_validate_chiral.label_alt_id ?
_pdbx_validate_chiral.auth_asym_id A
_pdbx_validate_chiral.auth_comp_id SC
_pdbx_validate_chiral.auth_seq_id 6
_pdbx_validate_chiral.PDB_ins_code ?
_pdbx_validate_chiral.details PLANAR
_pdbx_validate_chiral.omega .
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A SC 2 A SC 2 ? DC "2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE"
2 A SC 4 A SC 4 ? DC "2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE"
3 A SC 6 A SC 6 ? DC "2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE"
4 B SC 2 B SC 8 ? DC "2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE"
5 B SC 4 B SC 10 ? DC "2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE"
6 B SC 6 B SC 12 ? DC "2-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE"
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DG OP3 O N N 1
DG P P N N 2
DG OP1 O N N 3
DG OP2 O N N 4
DG "O5'" O N N 5
DG "C5'" C N N 6
DG "C4'" C N R 7
DG "O4'" O N N 8
DG "C3'" C N S 9
DG "O3'" O N N 10
DG "C2'" C N N 11
DG "C1'" C N R 12
DG N9 N Y N 13
DG C8 C Y N 14
DG N7 N Y N 15
DG C5 C Y N 16
DG C6 C N N 17
DG O6 O N N 18
DG N1 N N N 19
DG C2 C N N 20
DG N2 N N N 21
DG N3 N N N 22
DG C4 C Y N 23
DG HOP3 H N N 24
DG HOP2 H N N 25
DG "H5'" H N N 26
DG "H5''" H N N 27
DG "H4'" H N N 28
DG "H3'" H N N 29
DG "HO3'" H N N 30
DG "H2'" H N N 31
DG "H2''" H N N 32
DG "H1'" H N N 33
DG H8 H N N 34
DG H1 H N N 35
DG H21 H N N 36
DG H22 H N N 37
HOH O O N N 38
HOH H1 H N N 39
HOH H2 H N N 40
SC N1 N N N 41
SC C2 C N N 42
SC N3 N N N 43
SC C4 C N N 44
SC C5 C N N 45
SC C6 C N N 46
SC O2 O N N 47
SC N4 N N N 48
SC "C1'" C N R 49
SC "C2'" C N N 50
SC "C3'" C N S 51
SC "C4'" C N R 52
SC "O4'" O N N 53
SC "O3'" O N N 54
SC "C5'" C N N 55
SC "O5'" O N N 56
SC P P N N 57
SC OP1 O N N 58
SC S2P S N N 59
SC OP3 O N N 60
SC H5 H N N 61
SC H6 H N N 62
SC HN41 H N N 63
SC HN42 H N N 64
SC "H1'" H N N 65
SC "H2'" H N N 66
SC "H2''" H N N 67
SC "H3'" H N N 68
SC "H4'" H N N 69
SC "HO3'" H N N 70
SC "H5'" H N N 71
SC "H5''" H N N 72
SC HOP1 H N N 73
SC HOP3 H N N 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DG OP3 P sing N N 1
DG OP3 HOP3 sing N N 2
DG P OP1 doub N N 3
DG P OP2 sing N N 4
DG P "O5'" sing N N 5
DG OP2 HOP2 sing N N 6
DG "O5'" "C5'" sing N N 7
DG "C5'" "C4'" sing N N 8
DG "C5'" "H5'" sing N N 9
DG "C5'" "H5''" sing N N 10
DG "C4'" "O4'" sing N N 11
DG "C4'" "C3'" sing N N 12
DG "C4'" "H4'" sing N N 13
DG "O4'" "C1'" sing N N 14
DG "C3'" "O3'" sing N N 15
DG "C3'" "C2'" sing N N 16
DG "C3'" "H3'" sing N N 17
DG "O3'" "HO3'" sing N N 18
DG "C2'" "C1'" sing N N 19
DG "C2'" "H2'" sing N N 20
DG "C2'" "H2''" sing N N 21
DG "C1'" N9 sing N N 22
DG "C1'" "H1'" sing N N 23
DG N9 C8 sing Y N 24
DG N9 C4 sing Y N 25
DG C8 N7 doub Y N 26
DG C8 H8 sing N N 27
DG N7 C5 sing Y N 28
DG C5 C6 sing N N 29
DG C5 C4 doub Y N 30
DG C6 O6 doub N N 31
DG C6 N1 sing N N 32
DG N1 C2 sing N N 33
DG N1 H1 sing N N 34
DG C2 N2 sing N N 35
DG C2 N3 doub N N 36
DG N2 H21 sing N N 37
DG N2 H22 sing N N 38
DG N3 C4 sing N N 39
HOH O H1 sing N N 40
HOH O H2 sing N N 41
SC N1 C2 sing N N 42
SC N1 C6 sing N N 43
SC N1 "C1'" sing N N 44
SC C2 N3 sing N N 45
SC C2 O2 doub N N 46
SC N3 C4 doub N N 47
SC C4 C5 sing N N 48
SC C4 N4 sing N N 49
SC C5 C6 doub N N 50
SC C5 H5 sing N N 51
SC C6 H6 sing N N 52
SC N4 HN41 sing N N 53
SC N4 HN42 sing N N 54
SC "C1'" "C2'" sing N N 55
SC "C1'" "O4'" sing N N 56
SC "C1'" "H1'" sing N N 57
SC "C2'" "C3'" sing N N 58
SC "C2'" "H2'" sing N N 59
SC "C2'" "H2''" sing N N 60
SC "C3'" "C4'" sing N N 61
SC "C3'" "O3'" sing N N 62
SC "C3'" "H3'" sing N N 63
SC "C4'" "O4'" sing N N 64
SC "C4'" "C5'" sing N N 65
SC "C4'" "H4'" sing N N 66
SC "O3'" "HO3'" sing N N 67
SC "C5'" "O5'" sing N N 68
SC "C5'" "H5'" sing N N 69
SC "C5'" "H5''" sing N N 70
SC "O5'" P sing N N 71
SC P OP1 sing N N 72
SC P S2P doub N N 73
SC P OP3 sing N N 74
SC OP1 HOP1 sing N N 75
SC OP3 HOP3 sing N N 76
#
_ndb_struct_conf_na.entry_id 1D97
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 B SC 6 1_555 -0.350 -0.012 0.370 4.136 -9.904 -1.113 1 A_DG1:SC12_B A 1 ? B 12 ? 19 1
1 A SC 2 1_555 B DG 5 1_555 -0.254 -0.293 0.109 -4.777 3.557 -2.486 2 A_SC2:DG11_B A 2 ? B 11 ? 19 1
1 A DG 3 1_555 B SC 4 1_555 0.248 -0.226 0.412 3.446 -13.676 -5.981 3 A_DG3:SC10_B A 3 ? B 10 ? 19 1
1 A SC 4 1_555 B DG 3 1_555 0.387 -0.288 0.204 0.564 -8.339 -1.847 4 A_SC4:DG9_B A 4 ? B 9 ? 19 1
1 A DG 5 1_555 B SC 2 1_555 0.000 -0.164 0.152 1.859 -9.318 0.687 5 A_DG5:SC8_B A 5 ? B 8 ? 19 1
1 A SC 6 1_555 B DG 1 1_555 -0.119 -0.231 0.324 -7.715 -5.203 0.040 6 A_SC6:DG7_B A 6 ? B 7 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 B SC 6 1_555 A SC 2 1_555 B DG 5 1_555 0.900 0.360 3.665 2.722 1.401 37.179 0.352 -0.999 3.730 2.193 -4.261
37.300 1 AA_DG1SC2:DG11SC12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A SC 2 1_555 B DG 5 1_555 A DG 3 1_555 B SC 4 1_555 -1.200 0.896 3.291 -3.633 -2.006 36.170 1.718 1.408 3.339 -3.218 5.828
36.399 2 AA_SC2DG3:SC10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DG 3 1_555 B SC 4 1_555 A SC 4 1_555 B DG 3 1_555 0.980 0.692 3.495 4.137 -1.523 38.351 1.250 -0.931 3.549 -2.309 -6.273
38.594 3 AA_DG3SC4:DG9SC10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A SC 4 1_555 B DG 3 1_555 A DG 5 1_555 B SC 2 1_555 -0.895 0.546 3.388 -1.547 -0.990 31.410 1.200 1.350 3.408 -1.827 2.854
31.463 4 AA_SC4DG5:SC8DG9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DG 5 1_555 B SC 2 1_555 A SC 6 1_555 B DG 1 1_555 1.196 -0.382 3.590 -1.550 -0.931 37.141 -0.464 -2.101 3.547 -1.461 2.432
37.184 5 AA_DG5SC6:DG7SC8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
_atom_sites.entry_id 1D97
_atom_sites.fract_transf_matrix[1][1] 0.028653
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.025543
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.048450
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
S
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? -4.917 -5.043 15.759 1.00 10.00 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? -4.118 -4.009 15.158 1.00 10.00 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? -5.043 -3.171 14.328 1.00 10.00 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? -4.568 -1.817 14.202 1.00 10.00 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? -5.403 -3.649 12.925 1.00 10.00 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? -6.781 -3.324 12.663 1.00 10.00 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? -4.376 -2.885 12.097 1.00 10.00 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? -4.195 -1.586 12.836 1.00 10.00 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? -2.844 -1.006 12.910 1.00 10.00 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? -1.619 -1.629 12.921 1.00 10.00 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? -0.632 -0.807 13.005 1.00 10.00 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? -1.201 0.458 13.055 1.00 10.00 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? -0.614 1.726 13.141 1.00 10.00 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 0.600 2.020 13.201 1.00 10.00 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? -1.567 2.764 13.172 1.00 10.00 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? -2.942 2.549 13.121 1.00 10.00 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? -3.692 3.657 13.160 1.00 10.00 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? -3.518 1.351 13.032 1.00 10.00 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? -2.586 0.356 13.003 1.00 10.00 ? 1 DG A C4 1
HETATM 20 N N1 . SC A 1 2 ? -3.665 0.564 9.251 1.00 10.00 ? 2 SC A N1 1
HETATM 21 C C2 . SC A 1 2 ? -2.792 1.660 9.360 1.00 10.00 ? 2 SC A C2 1
HETATM 22 N N3 . SC A 1 2 ? -1.476 1.402 9.554 1.00 10.00 ? 2 SC A N3 1
HETATM 23 C C4 . SC A 1 2 ? -1.026 0.157 9.641 1.00 10.00 ? 2 SC A C4 1
HETATM 24 C C5 . SC A 1 2 ? -1.902 -0.979 9.534 1.00 10.00 ? 2 SC A C5 1
HETATM 25 C C6 . SC A 1 2 ? -3.190 -0.728 9.338 1.00 10.00 ? 2 SC A C6 1
HETATM 26 O O2 . SC A 1 2 ? -3.253 2.803 9.269 1.00 10.00 ? 2 SC A O2 1
HETATM 27 N N4 . SC A 1 2 ? 0.300 -0.012 9.831 1.00 10.00 ? 2 SC A N4 1
HETATM 28 C "C1'" . SC A 1 2 ? -5.078 0.818 9.038 1.00 10.00 ? 2 SC A "C1'" 1
HETATM 29 C "C2'" . SC A 1 2 ? -5.842 -0.184 8.151 1.00 10.00 ? 2 SC A "C2'" 1
HETATM 30 C "C3'" . SC A 1 2 ? -7.270 0.184 8.576 1.00 10.00 ? 2 SC A "C3'" 1
HETATM 31 C "C4'" . SC A 1 2 ? -7.113 0.388 10.079 1.00 10.00 ? 2 SC A "C4'" 1
HETATM 32 O "O4'" . SC A 1 2 ? -5.710 0.689 10.303 1.00 10.00 ? 2 SC A "O4'" 1
HETATM 33 O "O3'" . SC A 1 2 ? -7.671 1.405 7.917 1.00 10.00 ? 2 SC A "O3'" 1
HETATM 34 C "C5'" . SC A 1 2 ? -7.483 -0.685 11.059 1.00 10.00 ? 2 SC A "C5'" 1
HETATM 35 O "O5'" . SC A 1 2 ? -7.298 -2.001 10.580 1.00 10.00 ? 2 SC A "O5'" 1
HETATM 36 P P . SC A 1 2 ? -7.493 -3.441 11.228 1.00 10.00 ? 2 SC A P 1
HETATM 37 O OP1 . SC A 1 2 ? -8.900 -3.809 11.426 1.00 10.00 ? 2 SC A OP1 1
HETATM 38 S S2P . SC A 1 2 ? -6.505 -4.772 10.198 1.00 10.00 ? 2 SC A S2P 1
ATOM 39 P P . DG A 1 3 ? -9.057 1.546 7.189 1.00 10.00 ? 3 DG A P 1
ATOM 40 O OP1 . DG A 1 3 ? -10.208 1.045 8.066 1.00 10.00 ? 3 DG A OP1 1
ATOM 41 O OP2 . DG A 1 3 ? -9.088 0.838 5.851 1.00 10.00 ? 3 DG A OP2 1
ATOM 42 O "O5'" . DG A 1 3 ? -9.294 3.085 6.877 1.00 10.00 ? 3 DG A "O5'" 1
ATOM 43 C "C5'" . DG A 1 3 ? -9.018 4.181 7.748 1.00 10.00 ? 3 DG A "C5'" 1
ATOM 44 C "C4'" . DG A 1 3 ? -8.069 5.129 7.094 1.00 10.00 ? 3 DG A "C4'" 1
ATOM 45 O "O4'" . DG A 1 3 ? -6.697 4.761 7.243 1.00 10.00 ? 3 DG A "O4'" 1
ATOM 46 C "C3'" . DG A 1 3 ? -8.271 5.551 5.647 1.00 10.00 ? 3 DG A "C3'" 1
ATOM 47 O "O3'" . DG A 1 3 ? -8.188 7.000 5.626 1.00 10.00 ? 3 DG A "O3'" 1
ATOM 48 C "C2'" . DG A 1 3 ? -7.095 4.913 4.912 1.00 10.00 ? 3 DG A "C2'" 1
ATOM 49 C "C1'" . DG A 1 3 ? -6.027 4.921 5.965 1.00 10.00 ? 3 DG A "C1'" 1
ATOM 50 N N9 . DG A 1 3 ? -5.005 3.852 5.889 1.00 10.00 ? 3 DG A N9 1
ATOM 51 C C8 . DG A 1 3 ? -5.179 2.521 5.655 1.00 10.00 ? 3 DG A C8 1
ATOM 52 N N7 . DG A 1 3 ? -4.062 1.871 5.657 1.00 10.00 ? 3 DG A N7 1
ATOM 53 C C5 . DG A 1 3 ? -3.075 2.799 5.909 1.00 10.00 ? 3 DG A C5 1
ATOM 54 C C6 . DG A 1 3 ? -1.661 2.658 6.035 1.00 10.00 ? 3 DG A C6 1
ATOM 55 O O6 . DG A 1 3 ? -1.002 1.605 5.932 1.00 10.00 ? 3 DG A O6 1
ATOM 56 N N1 . DG A 1 3 ? -1.033 3.884 6.293 1.00 10.00 ? 3 DG A N1 1
ATOM 57 C C2 . DG A 1 3 ? -1.693 5.058 6.429 1.00 10.00 ? 3 DG A C2 1
ATOM 58 N N2 . DG A 1 3 ? -0.991 6.190 6.689 1.00 10.00 ? 3 DG A N2 1
ATOM 59 N N3 . DG A 1 3 ? -3.015 5.219 6.316 1.00 10.00 ? 3 DG A N3 1
ATOM 60 C C4 . DG A 1 3 ? -3.640 4.040 6.056 1.00 10.00 ? 3 DG A C4 1
HETATM 61 N N1 . SC A 1 4 ? -4.066 5.990 2.483 1.00 10.00 ? 4 SC A N1 1
HETATM 62 C C2 . SC A 1 4 ? -2.789 5.430 2.681 1.00 10.00 ? 4 SC A C2 1
HETATM 63 N N3 . SC A 1 4 ? -2.649 4.091 2.561 1.00 10.00 ? 4 SC A N3 1
HETATM 64 C C4 . SC A 1 4 ? -3.713 3.328 2.260 1.00 10.00 ? 4 SC A C4 1
HETATM 65 C C5 . SC A 1 4 ? -5.019 3.895 2.050 1.00 10.00 ? 4 SC A C5 1
HETATM 66 C C6 . SC A 1 4 ? -5.158 5.223 2.171 1.00 10.00 ? 4 SC A C6 1
HETATM 67 O O2 . SC A 1 4 ? -1.871 6.209 2.962 1.00 10.00 ? 4 SC A O2 1
HETATM 68 N N4 . SC A 1 4 ? -3.560 2.004 2.140 1.00 10.00 ? 4 SC A N4 1
HETATM 69 C "C1'" . SC A 1 4 ? -4.192 7.438 2.627 1.00 10.00 ? 4 SC A "C1'" 1
HETATM 70 C "C2'" . SC A 1 4 ? -5.137 8.108 1.657 1.00 10.00 ? 4 SC A "C2'" 1
HETATM 71 C "C3'" . SC A 1 4 ? -5.399 9.396 2.411 1.00 10.00 ? 4 SC A "C3'" 1
HETATM 72 C "C4'" . SC A 1 4 ? -5.308 8.985 3.895 1.00 10.00 ? 4 SC A "C4'" 1
HETATM 73 O "O4'" . SC A 1 4 ? -4.799 7.658 3.907 1.00 10.00 ? 4 SC A "O4'" 1
HETATM 74 O "O3'" . SC A 1 4 ? -4.317 10.308 2.151 1.00 10.00 ? 4 SC A "O3'" 1
HETATM 75 C "C5'" . SC A 1 4 ? -6.621 9.048 4.650 1.00 10.00 ? 4 SC A "C5'" 1
HETATM 76 O "O5'" . SC A 1 4 ? -7.629 8.480 3.736 1.00 10.00 ? 4 SC A "O5'" 1
HETATM 77 P P . SC A 1 4 ? -8.962 7.900 4.541 1.00 10.00 ? 4 SC A P 1
HETATM 78 O OP1 . SC A 1 4 ? -9.632 9.071 5.158 1.00 10.00 ? 4 SC A OP1 1
HETATM 79 S S2P . SC A 1 4 ? -10.097 6.871 3.331 1.00 10.00 ? 4 SC A S2P 1
ATOM 80 P P . DG A 1 5 ? -4.596 11.698 1.393 1.00 10.00 ? 5 DG A P 1
ATOM 81 O OP1 . DG A 1 5 ? -5.022 12.743 2.351 1.00 10.00 ? 5 DG A OP1 1
ATOM 82 O OP2 . DG A 1 5 ? -5.483 11.432 0.260 1.00 10.00 ? 5 DG A OP2 1
ATOM 83 O "O5'" . DG A 1 5 ? -3.061 12.011 0.943 1.00 10.00 ? 5 DG A "O5'" 1
ATOM 84 C "C5'" . DG A 1 5 ? -2.101 12.168 2.045 1.00 10.00 ? 5 DG A "C5'" 1
ATOM 85 C "C4'" . DG A 1 5 ? -0.771 11.663 1.560 1.00 10.00 ? 5 DG A "C4'" 1
ATOM 86 O "O4'" . DG A 1 5 ? -0.848 10.226 1.441 1.00 10.00 ? 5 DG A "O4'" 1
ATOM 87 C "C3'" . DG A 1 5 ? -0.251 12.195 0.227 1.00 10.00 ? 5 DG A "C3'" 1
ATOM 88 O "O3'" . DG A 1 5 ? 1.176 12.387 0.250 1.00 10.00 ? 5 DG A "O3'" 1
ATOM 89 C "C2'" . DG A 1 5 ? -0.667 11.052 -0.700 1.00 10.00 ? 5 DG A "C2'" 1
ATOM 90 C "C1'" . DG A 1 5 ? -0.241 9.858 0.159 1.00 10.00 ? 5 DG A "C1'" 1
ATOM 91 N N9 . DG A 1 5 ? -0.907 8.570 -0.159 1.00 10.00 ? 5 DG A N9 1
ATOM 92 C C8 . DG A 1 5 ? -2.223 8.359 -0.493 1.00 10.00 ? 5 DG A C8 1
ATOM 93 N N7 . DG A 1 5 ? -2.523 7.129 -0.689 1.00 10.00 ? 5 DG A N7 1
ATOM 94 C C5 . DG A 1 5 ? -1.333 6.444 -0.479 1.00 10.00 ? 5 DG A C5 1
ATOM 95 C C6 . DG A 1 5 ? -1.044 5.050 -0.563 1.00 10.00 ? 5 DG A C6 1
ATOM 96 O O6 . DG A 1 5 ? -1.801 4.130 -0.848 1.00 10.00 ? 5 DG A O6 1
ATOM 97 N N1 . DG A 1 5 ? 0.269 4.776 -0.272 1.00 10.00 ? 5 DG A N1 1
ATOM 98 C C2 . DG A 1 5 ? 1.221 5.732 0.054 1.00 10.00 ? 5 DG A C2 1
ATOM 99 N N2 . DG A 1 5 ? 2.464 5.234 0.301 1.00 10.00 ? 5 DG A N2 1
ATOM 100 N N3 . DG A 1 5 ? 0.974 7.035 0.136 1.00 10.00 ? 5 DG A N3 1
ATOM 101 C C4 . DG A 1 5 ? -0.318 7.317 -0.140 1.00 10.00 ? 5 DG A C4 1
HETATM 102 N N1 . SC A 1 6 ? 1.410 7.814 -3.119 1.00 10.00 ? 6 SC A N1 1
HETATM 103 C C2 . SC A 1 6 ? 1.365 6.440 -3.368 1.00 10.00 ? 6 SC A C2 1
HETATM 104 N N3 . SC A 1 6 ? 0.185 5.873 -3.738 1.00 10.00 ? 6 SC A N3 1
HETATM 105 C C4 . SC A 1 6 ? -0.921 6.636 -3.860 1.00 10.00 ? 6 SC A C4 1
HETATM 106 C C5 . SC A 1 6 ? -0.883 8.026 -3.608 1.00 10.00 ? 6 SC A C5 1
HETATM 107 C C6 . SC A 1 6 ? 0.269 8.586 -3.249 1.00 10.00 ? 6 SC A C6 1
HETATM 108 O O2 . SC A 1 6 ? 2.405 5.794 -3.243 1.00 10.00 ? 6 SC A O2 1
HETATM 109 N N4 . SC A 1 6 ? -2.070 6.021 -4.227 1.00 10.00 ? 6 SC A N4 1
HETATM 110 C "C1'" . SC A 1 6 ? 2.680 8.421 -2.724 1.00 10.00 ? 6 SC A "C1'" 1
HETATM 111 C "C2'" . SC A 1 6 ? 3.584 8.965 -3.820 1.00 10.00 ? 6 SC A "C2'" 1
HETATM 112 C "C3'" . SC A 1 6 ? 4.429 9.987 -3.098 1.00 10.00 ? 6 SC A "C3'" 1
HETATM 113 C "C4'" . SC A 1 6 ? 3.633 10.296 -1.876 1.00 10.00 ? 6 SC A "C4'" 1
HETATM 114 O "O4'" . SC A 1 6 ? 2.415 9.533 -1.845 1.00 10.00 ? 6 SC A "O4'" 1
HETATM 115 O "O3'" . SC A 1 6 ? 5.738 9.431 -2.817 1.00 10.00 ? 6 SC A "O3'" 1
HETATM 116 C "C5'" . SC A 1 6 ? 3.668 11.393 -0.916 1.00 10.00 ? 6 SC A "C5'" 1
HETATM 117 O "O5'" . SC A 1 6 ? 3.054 12.567 -1.424 1.00 10.00 ? 6 SC A "O5'" 1
HETATM 118 P P . SC A 1 6 ? 2.024 13.475 -0.572 1.00 10.00 ? 6 SC A P 1
HETATM 119 O OP1 . SC A 1 6 ? 2.799 14.388 0.291 1.00 10.00 ? 6 SC A OP1 1
HETATM 120 S S2P . SC A 1 6 ? 0.886 14.345 -1.860 1.00 10.00 ? 6 SC A S2P 1
ATOM 121 O "O5'" . DG B 1 1 ? -1.811 -4.224 -3.131 1.00 10.00 ? 7 DG B "O5'" 1
ATOM 122 C "C5'" . DG B 1 1 ? -1.075 -4.749 -4.256 1.00 10.00 ? 7 DG B "C5'" 1
ATOM 123 C "C4'" . DG B 1 1 ? 0.286 -4.130 -4.242 1.00 10.00 ? 7 DG B "C4'" 1
ATOM 124 O "O4'" . DG B 1 1 ? 0.297 -2.897 -4.945 1.00 10.00 ? 7 DG B "O4'" 1
ATOM 125 C "C3'" . DG B 1 1 ? 0.960 -3.895 -2.896 1.00 10.00 ? 7 DG B "C3'" 1
ATOM 126 O "O3'" . DG B 1 1 ? 2.342 -4.318 -2.931 1.00 10.00 ? 7 DG B "O3'" 1
ATOM 127 C "C2'" . DG B 1 1 ? 0.897 -2.392 -2.694 1.00 10.00 ? 7 DG B "C2'" 1
ATOM 128 C "C1'" . DG B 1 1 ? 0.771 -1.844 -4.099 1.00 10.00 ? 7 DG B "C1'" 1
ATOM 129 N N9 . DG B 1 1 ? -0.304 -0.799 -4.161 1.00 10.00 ? 7 DG B N9 1
ATOM 130 C C8 . DG B 1 1 ? -1.654 -0.971 -4.326 1.00 10.00 ? 7 DG B C8 1
ATOM 131 N N7 . DG B 1 1 ? -2.272 0.188 -4.334 1.00 10.00 ? 7 DG B N7 1
ATOM 132 C C5 . DG B 1 1 ? -1.295 1.139 -4.173 1.00 10.00 ? 7 DG B C5 1
ATOM 133 C C6 . DG B 1 1 ? -1.393 2.553 -4.103 1.00 10.00 ? 7 DG B C6 1
ATOM 134 O O6 . DG B 1 1 ? -2.415 3.257 -4.175 1.00 10.00 ? 7 DG B O6 1
ATOM 135 N N1 . DG B 1 1 ? -0.129 3.152 -3.936 1.00 10.00 ? 7 DG B N1 1
ATOM 136 C C2 . DG B 1 1 ? 1.044 2.459 -3.841 1.00 10.00 ? 7 DG B C2 1
ATOM 137 N N2 . DG B 1 1 ? 2.153 3.199 -3.676 1.00 10.00 ? 7 DG B N2 1
ATOM 138 N N3 . DG B 1 1 ? 1.148 1.143 -3.909 1.00 10.00 ? 7 DG B N3 1
ATOM 139 C C4 . DG B 1 1 ? -0.059 0.560 -4.068 1.00 10.00 ? 7 DG B C4 1
HETATM 140 N N1 . SC B 1 2 ? 3.026 0.564 -0.264 1.00 10.00 ? 8 SC B N1 1
HETATM 141 C C2 . SC B 1 2 ? 2.583 1.891 -0.219 1.00 10.00 ? 8 SC B C2 1
HETATM 142 N N3 . SC B 1 2 ? 1.256 2.122 -0.305 1.00 10.00 ? 8 SC B N3 1
HETATM 143 C C4 . SC B 1 2 ? 0.401 1.128 -0.425 1.00 10.00 ? 8 SC B C4 1
HETATM 144 C C5 . SC B 1 2 ? 0.845 -0.239 -0.477 1.00 10.00 ? 8 SC B C5 1
HETATM 145 C C6 . SC B 1 2 ? 2.157 -0.482 -0.398 1.00 10.00 ? 8 SC B C6 1
HETATM 146 O O2 . SC B 1 2 ? 3.431 2.815 -0.109 1.00 10.00 ? 8 SC B O2 1
HETATM 147 N N4 . SC B 1 2 ? -0.893 1.398 -0.504 1.00 10.00 ? 8 SC B N4 1
HETATM 148 C "C1'" . SC B 1 2 ? 4.481 0.286 -0.192 1.00 10.00 ? 8 SC B "C1'" 1
HETATM 149 C "C2'" . SC B 1 2 ? 4.921 -0.846 0.702 1.00 10.00 ? 8 SC B "C2'" 1
HETATM 150 C "C3'" . SC B 1 2 ? 5.978 -1.582 -0.116 1.00 10.00 ? 8 SC B "C3'" 1
HETATM 151 C "C4'" . SC B 1 2 ? 5.469 -1.437 -1.550 1.00 10.00 ? 8 SC B "C4'" 1
HETATM 152 O "O4'" . SC B 1 2 ? 4.722 -0.231 -1.554 1.00 10.00 ? 8 SC B "O4'" 1
HETATM 153 O "O3'" . SC B 1 2 ? 7.287 -0.951 -0.109 1.00 10.00 ? 8 SC B "O3'" 1
HETATM 154 C "C5'" . SC B 1 2 ? 4.855 -2.650 -2.194 1.00 10.00 ? 8 SC B "C5'" 1
HETATM 155 O "O5'" . SC B 1 2 ? 3.863 -3.238 -1.352 1.00 10.00 ? 8 SC B "O5'" 1
HETATM 156 P P . SC B 1 2 ? 3.096 -4.584 -1.536 1.00 10.00 ? 8 SC B P 1
HETATM 157 O OP1 . SC B 1 2 ? 3.867 -5.845 -1.721 1.00 10.00 ? 8 SC B OP1 1
HETATM 158 S S2P . SC B 1 2 ? 1.832 -4.768 -0.066 1.00 10.00 ? 8 SC B S2P 1
ATOM 159 P P . DG B 1 3 ? 8.170 -1.108 1.263 1.00 10.00 ? 9 DG B P 1
ATOM 160 O OP1 . DG B 1 3 ? 9.566 -0.783 0.929 1.00 10.00 ? 9 DG B OP1 1
ATOM 161 O OP2 . DG B 1 3 ? 7.783 -2.365 1.930 1.00 10.00 ? 9 DG B OP2 1
ATOM 162 O "O5'" . DG B 1 3 ? 7.490 0.082 2.163 1.00 10.00 ? 9 DG B "O5'" 1
ATOM 163 C "C5'" . DG B 1 3 ? 7.737 1.456 1.794 1.00 10.00 ? 9 DG B "C5'" 1
ATOM 164 C "C4'" . DG B 1 3 ? 7.011 2.329 2.805 1.00 10.00 ? 9 DG B "C4'" 1
ATOM 165 O "O4'" . DG B 1 3 ? 5.612 2.306 2.436 1.00 10.00 ? 9 DG B "O4'" 1
ATOM 166 C "C3'" . DG B 1 3 ? 7.130 1.934 4.277 1.00 10.00 ? 9 DG B "C3'" 1
ATOM 167 O "O3'" . DG B 1 3 ? 7.175 2.979 5.257 1.00 10.00 ? 9 DG B "O3'" 1
ATOM 168 C "C2'" . DG B 1 3 ? 5.769 1.237 4.510 1.00 10.00 ? 9 DG B "C2'" 1
ATOM 169 C "C1'" . DG B 1 3 ? 4.865 2.126 3.664 1.00 10.00 ? 9 DG B "C1'" 1
ATOM 170 N N9 . DG B 1 3 ? 3.539 1.550 3.505 1.00 10.00 ? 9 DG B N9 1
ATOM 171 C C8 . DG B 1 3 ? 3.141 0.219 3.474 1.00 10.00 ? 9 DG B C8 1
ATOM 172 N N7 . DG B 1 3 ? 1.843 0.082 3.317 1.00 10.00 ? 9 DG B N7 1
ATOM 173 C C5 . DG B 1 3 ? 1.337 1.358 3.253 1.00 10.00 ? 9 DG B C5 1
ATOM 174 C C6 . DG B 1 3 ? 0.021 1.828 3.094 1.00 10.00 ? 9 DG B C6 1
ATOM 175 O O6 . DG B 1 3 ? -1.044 1.171 2.974 1.00 10.00 ? 9 DG B O6 1
ATOM 176 N N1 . DG B 1 3 ? -0.045 3.230 3.073 1.00 10.00 ? 9 DG B N1 1
ATOM 177 C C2 . DG B 1 3 ? 1.047 4.052 3.199 1.00 10.00 ? 9 DG B C2 1
ATOM 178 N N2 . DG B 1 3 ? 0.862 5.387 3.166 1.00 10.00 ? 9 DG B N2 1
ATOM 179 N N3 . DG B 1 3 ? 2.296 3.629 3.340 1.00 10.00 ? 9 DG B N3 1
ATOM 180 C C4 . DG B 1 3 ? 2.366 2.279 3.364 1.00 10.00 ? 9 DG B C4 1
HETATM 181 N N1 . SC B 1 4 ? 3.884 4.980 6.844 1.00 10.00 ? 10 SC B N1 1
HETATM 182 C C2 . SC B 1 4 ? 2.481 5.109 6.739 1.00 10.00 ? 10 SC B C2 1
HETATM 183 N N3 . SC B 1 4 ? 1.728 3.989 6.782 1.00 10.00 ? 10 SC B N3 1
HETATM 184 C C4 . SC B 1 4 ? 2.293 2.807 6.912 1.00 10.00 ? 10 SC B C4 1
HETATM 185 C C5 . SC B 1 4 ? 3.727 2.666 7.022 1.00 10.00 ? 10 SC B C5 1
HETATM 186 C C6 . SC B 1 4 ? 4.474 3.743 6.976 1.00 10.00 ? 10 SC B C6 1
HETATM 187 O O2 . SC B 1 4 ? 1.996 6.244 6.623 1.00 10.00 ? 10 SC B O2 1
HETATM 188 N N4 . SC B 1 4 ? 1.490 1.719 6.960 1.00 10.00 ? 10 SC B N4 1
HETATM 189 C "C1'" . SC B 1 4 ? 4.694 6.190 6.786 1.00 10.00 ? 10 SC B "C1'" 1
HETATM 190 C "C2'" . SC B 1 4 ? 5.797 6.456 7.779 1.00 10.00 ? 10 SC B "C2'" 1
HETATM 191 C "C3'" . SC B 1 4 ? 6.631 7.462 6.968 1.00 10.00 ? 10 SC B "C3'" 1
HETATM 192 C "C4'" . SC B 1 4 ? 6.572 6.898 5.554 1.00 10.00 ? 10 SC B "C4'" 1
HETATM 193 O "O4'" . SC B 1 4 ? 5.375 6.068 5.494 1.00 10.00 ? 10 SC B "O4'" 1
HETATM 194 O "O3'" . SC B 1 4 ? 6.268 8.840 7.051 1.00 10.00 ? 10 SC B "O3'" 1
HETATM 195 C "C5'" . SC B 1 4 ? 7.688 5.978 5.096 1.00 10.00 ? 10 SC B "C5'" 1
HETATM 196 O "O5'" . SC B 1 4 ? 7.968 5.133 6.242 1.00 10.00 ? 10 SC B "O5'" 1
HETATM 197 P P . SC B 1 4 ? 8.474 3.614 5.973 1.00 10.00 ? 10 SC B P 1
HETATM 198 O OP1 . SC B 1 4 ? 9.559 3.782 4.970 1.00 10.00 ? 10 SC B OP1 1
HETATM 199 S S2P . SC B 1 4 ? 8.781 2.768 7.635 1.00 10.00 ? 10 SC B S2P 1
ATOM 200 P P . DG B 1 5 ? 6.708 9.807 8.260 1.00 10.00 ? 11 DG B P 1
ATOM 201 O OP1 . DG B 1 5 ? 7.109 11.087 7.639 1.00 10.00 ? 11 DG B OP1 1
ATOM 202 O OP2 . DG B 1 5 ? 7.692 9.134 9.162 1.00 10.00 ? 11 DG B OP2 1
ATOM 203 O "O5'" . DG B 1 5 ? 5.399 9.983 9.199 1.00 10.00 ? 11 DG B "O5'" 1
ATOM 204 C "C5'" . DG B 1 5 ? 4.101 10.179 8.638 1.00 10.00 ? 11 DG B "C5'" 1
ATOM 205 C "C4'" . DG B 1 5 ? 3.033 9.725 9.602 1.00 10.00 ? 11 DG B "C4'" 1
ATOM 206 O "O4'" . DG B 1 5 ? 2.740 8.304 9.435 1.00 10.00 ? 11 DG B "O4'" 1
ATOM 207 C "C3'" . DG B 1 5 ? 3.305 9.940 11.061 1.00 10.00 ? 11 DG B "C3'" 1
ATOM 208 O "O3'" . DG B 1 5 ? 2.076 10.246 11.806 1.00 10.00 ? 11 DG B "O3'" 1
ATOM 209 C "C2'" . DG B 1 5 ? 3.863 8.550 11.422 1.00 10.00 ? 11 DG B "C2'" 1
ATOM 210 C "C1'" . DG B 1 5 ? 2.771 7.716 10.768 1.00 10.00 ? 11 DG B "C1'" 1
ATOM 211 N N9 . DG B 1 5 ? 2.966 6.268 10.671 1.00 10.00 ? 11 DG B N9 1
ATOM 212 C C8 . DG B 1 5 ? 4.115 5.528 10.801 1.00 10.00 ? 11 DG B C8 1
ATOM 213 N N7 . DG B 1 5 ? 3.930 4.236 10.656 1.00 10.00 ? 11 DG B N7 1
ATOM 214 C C5 . DG B 1 5 ? 2.576 4.119 10.423 1.00 10.00 ? 11 DG B C5 1
ATOM 215 C C6 . DG B 1 5 ? 1.787 2.960 10.188 1.00 10.00 ? 11 DG B C6 1
ATOM 216 O O6 . DG B 1 5 ? 2.139 1.781 10.140 1.00 10.00 ? 11 DG B O6 1
ATOM 217 N N1 . DG B 1 5 ? 0.433 3.269 9.988 1.00 10.00 ? 11 DG B N1 1
ATOM 218 C C2 . DG B 1 5 ? -0.073 4.545 10.015 1.00 10.00 ? 11 DG B C2 1
ATOM 219 N N2 . DG B 1 5 ? -1.393 4.690 9.816 1.00 10.00 ? 11 DG B N2 1
ATOM 220 N N3 . DG B 1 5 ? 0.653 5.638 10.233 1.00 10.00 ? 11 DG B N3 1
ATOM 221 C C4 . DG B 1 5 ? 1.968 5.348 10.429 1.00 10.00 ? 11 DG B C4 1
HETATM 222 N N1 . SC B 1 6 ? -0.789 7.869 13.352 1.00 10.00 ? 12 SC B N1 1
HETATM 223 C C2 . SC B 1 6 ? -1.256 6.546 13.323 1.00 10.00 ? 12 SC B C2 1
HETATM 224 N N3 . SC B 1 6 ? -0.377 5.548 13.542 1.00 10.00 ? 12 SC B N3 1
HETATM 225 C C4 . SC B 1 6 ? 0.904 5.814 13.771 1.00 10.00 ? 12 SC B C4 1
HETATM 226 C C5 . SC B 1 6 ? 1.413 7.149 13.804 1.00 10.00 ? 12 SC B C5 1
HETATM 227 C C6 . SC B 1 6 ? 0.537 8.139 13.593 1.00 10.00 ? 12 SC B C6 1
HETATM 228 O O2 . SC B 1 6 ? -2.478 6.362 13.100 1.00 10.00 ? 12 SC B O2 1
HETATM 229 N N4 . SC B 1 6 ? 1.752 4.780 13.990 1.00 10.00 ? 12 SC B N4 1
HETATM 230 C "C1'" . SC B 1 6 ? -1.742 8.969 13.106 1.00 10.00 ? 12 SC B "C1'" 1
HETATM 231 C "C2'" . SC B 1 6 ? -1.756 10.089 14.103 1.00 10.00 ? 12 SC B "C2'" 1
HETATM 232 C "C3'" . SC B 1 6 ? -2.227 11.275 13.267 1.00 10.00 ? 12 SC B "C3'" 1
HETATM 233 C "C4'" . SC B 1 6 ? -1.626 10.982 11.905 1.00 10.00 ? 12 SC B "C4'" 1
HETATM 234 O "O4'" . SC B 1 6 ? -1.410 9.580 11.825 1.00 10.00 ? 12 SC B "O4'" 1
HETATM 235 O "O3'" . SC B 1 6 ? -3.665 11.326 13.117 1.00 10.00 ? 12 SC B "O3'" 1
HETATM 236 C "C5'" . SC B 1 6 ? -0.492 11.835 11.466 1.00 10.00 ? 12 SC B "C5'" 1
HETATM 237 O "O5'" . SC B 1 6 ? 0.422 12.035 12.574 1.00 10.00 ? 12 SC B "O5'" 1
HETATM 238 P P . SC B 1 6 ? 1.982 11.796 12.355 1.00 10.00 ? 12 SC B P 1
HETATM 239 O OP1 . SC B 1 6 ? 2.562 12.708 11.335 1.00 10.00 ? 12 SC B OP1 1
HETATM 240 S S2P . SC B 1 6 ? 2.939 11.843 14.041 1.00 10.00 ? 12 SC B S2P 1
HETATM 241 O O . HOH C 2 . ? -7.626 1.315 2.489 1.00 10.00 ? 13 HOH A O 1
HETATM 242 O O . HOH C 2 . ? -3.979 -0.705 4.681 1.00 10.00 ? 14 HOH A O 1
HETATM 243 O O . HOH C 2 . ? -5.137 5.782 -1.404 1.00 10.00 ? 15 HOH A O 1
HETATM 244 O O . HOH C 2 . ? 4.631 5.352 -2.650 1.00 10.00 ? 17 HOH A O 1
HETATM 245 O O . HOH C 2 . ? -6.652 1.131 13.773 1.00 10.00 ? 21 HOH A O 1
HETATM 246 O O . HOH C 2 . ? -6.251 2.694 -2.388 1.00 10.00 ? 25 HOH A O 1
HETATM 247 O O . HOH C 2 . ? -0.412 9.001 3.703 1.00 10.00 ? 27 HOH A O 1
HETATM 248 O O . HOH C 2 . ? -1.871 -0.505 6.332 1.00 10.00 ? 29 HOH A O 1
HETATM 249 O O . HOH C 2 . ? -8.132 7.971 1.408 1.00 10.00 ? 30 HOH A O 1
HETATM 250 O O . HOH C 2 . ? -7.165 -0.121 4.450 1.00 10.00 ? 34 HOH A O 1
HETATM 251 O O . HOH C 2 . ? 0.003 -2.341 6.578 1.00 10.00 ? 35 HOH A O 1
HETATM 252 O O . HOH C 2 . ? -6.111 2.369 12.202 1.00 10.00 ? 37 HOH A O 1
HETATM 253 O O . HOH C 2 . ? -5.228 6.072 -3.955 1.00 10.00 ? 38 HOH A O 1
HETATM 254 O O . HOH C 2 . ? -3.692 -3.680 9.251 1.00 10.00 ? 41 HOH A O 1
HETATM 255 O O . HOH C 2 . ? -5.553 -6.479 12.105 1.00 10.00 ? 43 HOH A O 1
HETATM 256 O O . HOH C 2 . ? -4.813 15.112 2.019 1.00 10.00 ? 44 HOH A O 1
HETATM 257 O O . HOH C 2 . ? 2.380 -1.190 12.002 1.00 10.00 ? 45 HOH A O 1
HETATM 258 O O . HOH C 2 . ? -5.479 4.064 9.690 1.00 10.00 ? 46 HOH A O 1
HETATM 259 O O . HOH C 2 . ? -6.509 -7.356 9.457 1.00 10.00 ? 47 HOH A O 1
HETATM 260 O O . HOH C 2 . ? -8.191 2.584 4.254 1.00 10.00 ? 58 HOH A O 1
HETATM 261 O O . HOH C 2 . ? -7.880 5.849 1.998 1.00 10.00 ? 59 HOH A O 1
HETATM 262 O O . HOH C 2 . ? -10.062 9.529 0.506 1.00 10.00 ? 65 HOH A O 1
HETATM 263 O O . HOH C 2 . ? 5.738 7.298 -0.890 1.00 10.00 ? 67 HOH A O 1
HETATM 264 O O . HOH C 2 . ? 3.822 0.587 13.247 1.00 10.00 ? 68 HOH A O 1
HETATM 265 O O . HOH C 2 . ? -3.616 13.068 4.334 1.00 10.00 ? 71 HOH A O 1
HETATM 266 O O . HOH C 2 . ? 0.803 -3.022 9.346 1.00 10.00 ? 73 HOH A O 1
HETATM 267 O O . HOH C 2 . ? -7.825 12.677 2.658 1.00 10.00 ? 74 HOH A O 1
HETATM 268 O O . HOH C 2 . ? -4.366 15.304 -0.452 1.00 10.00 ? 76 HOH A O 1
HETATM 269 O O . HOH C 2 . ? -6.586 0.900 -0.318 1.00 10.00 ? 78 HOH A O 1
HETATM 270 O O . HOH C 2 . ? -8.547 -6.025 10.603 1.00 10.00 ? 79 HOH A O 1
HETATM 271 O O . HOH C 2 . ? 1.961 -4.447 11.571 1.00 10.00 ? 80 HOH A O 1
HETATM 272 O O . HOH C 2 . ? -8.470 -1.820 2.225 1.00 10.00 ? 81 HOH A O 1
HETATM 273 O O . HOH C 2 . ? -7.025 -1.323 0.128 1.00 10.00 ? 84 HOH A O 1
HETATM 274 O O . HOH D 2 . ? 6.488 -1.409 4.613 1.00 10.00 ? 16 HOH B O 1
HETATM 275 O O . HOH D 2 . ? 10.494 4.103 2.772 1.00 10.00 ? 18 HOH B O 1
HETATM 276 O O . HOH D 2 . ? -0.314 8.182 9.651 1.00 10.00 ? 19 HOH B O 1
HETATM 277 O O . HOH D 2 . ? 4.823 3.406 14.147 1.00 10.00 ? 20 HOH B O 1
HETATM 278 O O . HOH D 2 . ? 8.477 5.219 9.476 1.00 10.00 ? 22 HOH B O 1
HETATM 279 O O . HOH D 2 . ? -5.141 -0.204 -4.722 1.00 10.00 ? 23 HOH B O 1
HETATM 280 O O . HOH D 2 . ? 3.148 -0.576 7.360 1.00 10.00 ? 24 HOH B O 1
HETATM 281 O O . HOH D 2 . ? 2.066 9.337 6.091 1.00 10.00 ? 26 HOH B O 1
HETATM 282 O O . HOH D 2 . ? 6.073 -5.027 -2.023 1.00 10.00 ? 28 HOH B O 1
HETATM 283 O O . HOH D 2 . ? -3.647 6.894 9.802 1.00 10.00 ? 31 HOH B O 1
HETATM 284 O O . HOH D 2 . ? 10.173 -3.492 0.499 1.00 10.00 ? 32 HOH B O 1
HETATM 285 O O . HOH D 2 . ? 6.725 10.696 4.019 1.00 10.00 ? 33 HOH B O 1
HETATM 286 O O . HOH D 2 . ? 9.098 -3.590 2.869 1.00 10.00 ? 36 HOH B O 1
HETATM 287 O O . HOH D 2 . ? 6.278 2.670 8.673 1.00 10.00 ? 39 HOH B O 1
HETATM 288 O O . HOH D 2 . ? 9.203 8.194 7.496 1.00 10.00 ? 40 HOH B O 1
HETATM 289 O O . HOH D 2 . ? 9.036 12.328 5.926 1.00 10.00 ? 42 HOH B O 1
HETATM 290 O O . HOH D 2 . ? 4.174 5.735 3.282 1.00 10.00 ? 48 HOH B O 1
HETATM 291 O O . HOH D 2 . ? 9.863 11.956 9.428 1.00 10.00 ? 49 HOH B O 1
HETATM 292 O O . HOH D 2 . ? 4.942 -2.748 6.877 1.00 10.00 ? 50 HOH B O 1
HETATM 293 O O . HOH D 2 . ? 8.055 6.123 1.955 1.00 10.00 ? 51 HOH B O 1
HETATM 294 O O . HOH D 2 . ? 10.543 9.177 9.503 1.00 10.00 ? 52 HOH B O 1
HETATM 295 O O . HOH D 2 . ? 1.068 13.440 9.686 1.00 10.00 ? 53 HOH B O 1
HETATM 296 O O . HOH D 2 . ? 0.056 10.445 8.588 1.00 10.00 ? 54 HOH B O 1
HETATM 297 O O . HOH D 2 . ? -3.302 -0.298 -1.554 1.00 10.00 ? 55 HOH B O 1
HETATM 298 O O . HOH D 2 . ? 5.797 12.559 6.865 1.00 10.00 ? 56 HOH B O 1
HETATM 299 O O . HOH D 2 . ? 1.082 14.294 11.639 1.00 10.00 ? 57 HOH B O 1
HETATM 300 O O . HOH D 2 . ? 12.299 1.887 5.752 1.00 10.00 ? 60 HOH B O 1
HETATM 301 O O . HOH D 2 . ? 5.423 4.577 1.728 1.00 10.00 ? 61 HOH B O 1
HETATM 302 O O . HOH D 2 . ? 6.198 12.775 3.323 1.00 10.00 ? 62 HOH B O 1
HETATM 303 O O . HOH D 2 . ? 7.510 7.407 10.766 1.00 10.00 ? 63 HOH B O 1
HETATM 304 O O . HOH D 2 . ? 3.759 13.761 8.479 1.00 10.00 ? 64 HOH B O 1
HETATM 305 O O . HOH D 2 . ? 6.425 14.830 6.483 1.00 10.00 ? 66 HOH B O 1
HETATM 306 O O . HOH D 2 . ? 6.415 -5.070 0.083 1.00 10.00 ? 69 HOH B O 1
HETATM 307 O O . HOH D 2 . ? -5.218 8.351 13.589 1.00 10.00 ? 70 HOH B O 1
HETATM 308 O O . HOH D 2 . ? 4.928 15.629 11.346 1.00 10.00 ? 72 HOH B O 1
HETATM 309 O O . HOH D 2 . ? 1.302 -2.063 -6.708 1.00 10.00 ? 75 HOH B O 1
HETATM 310 O O . HOH D 2 . ? 10.941 6.640 6.052 1.00 10.00 ? 77 HOH B O 1
HETATM 311 O O . HOH D 2 . ? 5.305 2.255 11.486 1.00 10.00 ? 82 HOH B O 1
HETATM 312 O O . HOH D 2 . ? 3.609 -4.279 -6.409 1.00 10.00 ? 83 HOH B O 1
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