data_1D67
#
_entry.id 1D67
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1D67 pdb_00001d67 10.2210/pdb1d67/pdb
RCSB DDF038 ? ?
WWPDB D_1000172668 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1993-07-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1D67
_pdbx_database_status.recvd_initial_deposition_date 1992-03-31
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gallois, B.' 1
;Langlois D'Estaintot, B.
;
2
'Brown, T.' 3
'Hunter, W.N.' 4
#
_citation.id primary
_citation.title 'The structure of an idarubicin-d(TGATCA) complex at high resolution.'
_citation.journal_abbrev 'Acta Crystallogr.,Sect.D'
_citation.journal_volume 49
_citation.page_first 311
_citation.page_last 317
_citation.year 1993
_citation.journal_id_ASTM ABCRE6
_citation.country DK
_citation.journal_id_ISSN 0907-4449
_citation.journal_id_CSD 0766
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15299520
_citation.pdbx_database_id_DOI 10.1107/S0907444992009983
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gallois, B.' 1 ?
primary
;d'Estaintot, B.L.
;
2 ?
primary 'Brown, T.' 3 ?
primary 'Hunter, W.N.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*TP*GP*AP*TP*CP*A)-3')
;
1808.229 1 ? ? ? ?
2 non-polymer syn IDARUBICIN 497.494 1 ? ? ? ?
3 water nat water 18.015 35 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DA)(DT)(DC)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can TGATCA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 IDARUBICIN DM5
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DC n
1 6 DA n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DM5 non-polymer . IDARUBICIN 4-DEMETHOXY-DAUNORUBICIN 'C26 H27 N O9' 497.494
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT T A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DA 6 6 6 DA A A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM5 1 7 7 DM5 DM5 A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
C 3 HOH 34 41 41 HOH HOH A .
C 3 HOH 35 42 42 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1D67
_cell.length_a 28.190
_cell.length_b 28.190
_cell.length_c 52.770
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1D67
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 1D67
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.90
_exptl_crystal.density_percent_sol 57.57
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 295.00
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.50
_exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, temperature 295.00K'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 'MG ACETATE' ? ? ?
1 5 1 SPERMINE_HCL ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.crystal_id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1D67
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.500
_reflns.number_obs 4578
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1D67
_refine.ls_number_reflns_obs 2032
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 3.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 1.600
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.2220000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 36
_refine_hist.number_atoms_solvent 35
_refine_hist.number_atoms_total 191
_refine_hist.d_res_high 1.600
_refine_hist.d_res_low 8.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d 0.030 ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 1D67
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1D67
_struct.title 'THE MOLECULAR STRUCTURE OF AN IDARUBICIN-D(TGATCA) COMPLEX AT HIGH RESOLUTION'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1D67
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1D67
_struct_ref.pdbx_db_accession 1D67
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1D67
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1D67
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.3850000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 1 A DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 1 A DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 1 N3 ? ? A DA 6 A DT 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 1 O4 ? ? A DA 6 A DT 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DM5 7 ? 10 'BINDING SITE FOR RESIDUE DM5 A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 10 DT A 1 ? DT A 1 . ? 8_555 ?
2 AC1 10 DG A 2 ? DG A 2 . ? 8_555 ?
3 AC1 10 DA A 3 ? DA A 3 . ? 8_555 ?
4 AC1 10 DT A 4 ? DT A 4 . ? 1_555 ?
5 AC1 10 DC A 5 ? DC A 5 . ? 1_555 ?
6 AC1 10 DA A 6 ? DA A 6 . ? 1_555 ?
7 AC1 10 HOH C . ? HOH A 17 . ? 1_555 ?
8 AC1 10 HOH C . ? HOH A 18 . ? 1_555 ?
9 AC1 10 HOH C . ? HOH A 33 . ? 1_555 ?
10 AC1 10 HOH C . ? HOH A 42 . ? 8_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.335 1.391 -0.056 0.007 N
2 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.510 1.420 0.090 0.011 N
3 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.372 1.446 -0.074 0.010 N
4 1 C6 A DA 6 ? ? N1 A DA 6 ? ? 1.431 1.351 0.080 0.007 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A DT 1 ? ? "C5'" A DT 1 ? ? "C4'" A DT 1 ? ? 104.35 109.40 -5.05 0.80 N
2 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 122.67 127.20 -4.53 0.60 N
3 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 118.96 115.20 3.76 0.60 N
4 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.33 102.40 -5.07 0.80 N
5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.89 108.30 5.59 0.30 N
6 1 "O5'" A DA 3 ? ? "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 101.15 109.40 -8.25 0.80 N
7 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 100.60 105.90 -5.30 0.80 N
8 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 101.91 108.00 -6.09 0.70 N
9 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 100.66 109.40 -8.74 0.80 N
10 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 126.42 108.30 18.12 0.30 N
11 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 114.32 117.70 -3.38 0.50 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DM5 C1 C Y N 108
DM5 C2 C Y N 109
DM5 C3 C Y N 110
DM5 C4 C Y N 111
DM5 C5 C Y N 112
DM5 C6 C N N 113
DM5 O6 O N N 114
DM5 C7 C Y N 115
DM5 C8 C Y N 116
DM5 O8 O N N 117
DM5 C9 C Y N 118
DM5 C10 C N S 119
DM5 O10 O N N 120
DM5 C11 C N N 121
DM5 C12 C N S 122
DM5 O12 O N N 123
DM5 C13 C N N 124
DM5 O13 O N N 125
DM5 C14 C N N 126
DM5 C15 C N N 127
DM5 C16 C Y N 128
DM5 C17 C Y N 129
DM5 O17 O N N 130
DM5 C18 C Y N 131
DM5 C19 C N N 132
DM5 O19 O N N 133
DM5 C20 C Y N 134
DM5 "C1'" C N R 135
DM5 "C2'" C N N 136
DM5 "C3'" C N S 137
DM5 "N3'" N N N 138
DM5 "C4'" C N S 139
DM5 "O4'" O N N 140
DM5 "C5'" C N S 141
DM5 "O5'" O N N 142
DM5 "C6'" C N N 143
DM5 H1 H N N 144
DM5 H2 H N N 145
DM5 H3 H N N 146
DM5 H4 H N N 147
DM5 HO8 H N N 148
DM5 H10 H N N 149
DM5 H111 H N N 150
DM5 H112 H N N 151
DM5 HO12 H N N 152
DM5 H141 H N N 153
DM5 H142 H N N 154
DM5 H143 H N N 155
DM5 H151 H N N 156
DM5 H152 H N N 157
DM5 HO17 H N N 158
DM5 "H1'" H N N 159
DM5 "H2'1" H N N 160
DM5 "H2'2" H N N 161
DM5 "H3'" H N N 162
DM5 "HN'1" H N N 163
DM5 "HN'2" H N N 164
DM5 "H4'" H N N 165
DM5 "HO4'" H N N 166
DM5 "H5'" H N N 167
DM5 "H6'1" H N N 168
DM5 "H6'2" H N N 169
DM5 "H6'3" H N N 170
DT OP3 O N N 171
DT P P N N 172
DT OP1 O N N 173
DT OP2 O N N 174
DT "O5'" O N N 175
DT "C5'" C N N 176
DT "C4'" C N R 177
DT "O4'" O N N 178
DT "C3'" C N S 179
DT "O3'" O N N 180
DT "C2'" C N N 181
DT "C1'" C N R 182
DT N1 N N N 183
DT C2 C N N 184
DT O2 O N N 185
DT N3 N N N 186
DT C4 C N N 187
DT O4 O N N 188
DT C5 C N N 189
DT C7 C N N 190
DT C6 C N N 191
DT HOP3 H N N 192
DT HOP2 H N N 193
DT "H5'" H N N 194
DT "H5''" H N N 195
DT "H4'" H N N 196
DT "H3'" H N N 197
DT "HO3'" H N N 198
DT "H2'" H N N 199
DT "H2''" H N N 200
DT "H1'" H N N 201
DT H3 H N N 202
DT H71 H N N 203
DT H72 H N N 204
DT H73 H N N 205
DT H6 H N N 206
HOH O O N N 207
HOH H1 H N N 208
HOH H2 H N N 209
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DM5 C1 C2 doub Y N 113
DM5 C1 C20 sing Y N 114
DM5 C1 H1 sing N N 115
DM5 C2 C3 sing Y N 116
DM5 C2 H2 sing N N 117
DM5 C3 C4 doub Y N 118
DM5 C3 H3 sing N N 119
DM5 C4 C5 sing Y N 120
DM5 C4 H4 sing N N 121
DM5 C5 C6 sing N N 122
DM5 C5 C20 doub Y N 123
DM5 C6 O6 doub N N 124
DM5 C6 C7 sing N N 125
DM5 C7 C8 doub Y N 126
DM5 C7 C18 sing Y N 127
DM5 C8 O8 sing N N 128
DM5 C8 C9 sing Y N 129
DM5 O8 HO8 sing N N 130
DM5 C9 C10 sing N N 131
DM5 C9 C16 doub Y N 132
DM5 C10 O10 sing N N 133
DM5 C10 C11 sing N N 134
DM5 C10 H10 sing N N 135
DM5 O10 "C1'" sing N N 136
DM5 C11 C12 sing N N 137
DM5 C11 H111 sing N N 138
DM5 C11 H112 sing N N 139
DM5 C12 O12 sing N N 140
DM5 C12 C13 sing N N 141
DM5 C12 C15 sing N N 142
DM5 O12 HO12 sing N N 143
DM5 C13 O13 doub N N 144
DM5 C13 C14 sing N N 145
DM5 C14 H141 sing N N 146
DM5 C14 H142 sing N N 147
DM5 C14 H143 sing N N 148
DM5 C15 C16 sing N N 149
DM5 C15 H151 sing N N 150
DM5 C15 H152 sing N N 151
DM5 C16 C17 sing Y N 152
DM5 C17 O17 sing N N 153
DM5 C17 C18 doub Y N 154
DM5 O17 HO17 sing N N 155
DM5 C18 C19 sing N N 156
DM5 C19 O19 doub N N 157
DM5 C19 C20 sing N N 158
DM5 "C1'" "C2'" sing N N 159
DM5 "C1'" "O5'" sing N N 160
DM5 "C1'" "H1'" sing N N 161
DM5 "C2'" "C3'" sing N N 162
DM5 "C2'" "H2'1" sing N N 163
DM5 "C2'" "H2'2" sing N N 164
DM5 "C3'" "N3'" sing N N 165
DM5 "C3'" "C4'" sing N N 166
DM5 "C3'" "H3'" sing N N 167
DM5 "N3'" "HN'1" sing N N 168
DM5 "N3'" "HN'2" sing N N 169
DM5 "C4'" "O4'" sing N N 170
DM5 "C4'" "C5'" sing N N 171
DM5 "C4'" "H4'" sing N N 172
DM5 "O4'" "HO4'" sing N N 173
DM5 "C5'" "O5'" sing N N 174
DM5 "C5'" "C6'" sing N N 175
DM5 "C5'" "H5'" sing N N 176
DM5 "C6'" "H6'1" sing N N 177
DM5 "C6'" "H6'2" sing N N 178
DM5 "C6'" "H6'3" sing N N 179
DT OP3 P sing N N 180
DT OP3 HOP3 sing N N 181
DT P OP1 doub N N 182
DT P OP2 sing N N 183
DT P "O5'" sing N N 184
DT OP2 HOP2 sing N N 185
DT "O5'" "C5'" sing N N 186
DT "C5'" "C4'" sing N N 187
DT "C5'" "H5'" sing N N 188
DT "C5'" "H5''" sing N N 189
DT "C4'" "O4'" sing N N 190
DT "C4'" "C3'" sing N N 191
DT "C4'" "H4'" sing N N 192
DT "O4'" "C1'" sing N N 193
DT "C3'" "O3'" sing N N 194
DT "C3'" "C2'" sing N N 195
DT "C3'" "H3'" sing N N 196
DT "O3'" "HO3'" sing N N 197
DT "C2'" "C1'" sing N N 198
DT "C2'" "H2'" sing N N 199
DT "C2'" "H2''" sing N N 200
DT "C1'" N1 sing N N 201
DT "C1'" "H1'" sing N N 202
DT N1 C2 sing N N 203
DT N1 C6 sing N N 204
DT C2 O2 doub N N 205
DT C2 N3 sing N N 206
DT N3 C4 sing N N 207
DT N3 H3 sing N N 208
DT C4 O4 doub N N 209
DT C4 C5 sing N N 210
DT C5 C7 sing N N 211
DT C5 C6 doub N N 212
DT C7 H71 sing N N 213
DT C7 H72 sing N N 214
DT C7 H73 sing N N 215
DT C6 H6 sing N N 216
HOH O H1 sing N N 217
HOH O H2 sing N N 218
#
_ndb_struct_conf_na.entry_id 1D67
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 1 1_555 A DA 6 8_555 -0.087 -0.191 -0.039 8.992 0.503 1.140 1 A_DT1:DA6_A A 1 ? A 6 ? 20 1
1 A DG 2 1_555 A DC 5 8_555 -0.113 -0.158 -0.418 -15.554 -0.088 -1.459 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DA 3 1_555 A DT 4 8_555 0.068 -0.168 -0.034 -10.942 -2.536 2.551 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1
1 A DT 4 1_555 A DA 3 8_555 -0.068 -0.168 -0.034 10.942 -2.536 2.551 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_555 0.113 -0.158 -0.418 15.554 -0.088 -1.459 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DA 6 1_555 A DT 1 8_555 0.087 -0.191 -0.039 -8.992 0.503 1.140 6 A_DA6:DT1_A A 6 ? A 1 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 1 1_555 A DA 6 8_555 A DG 2 1_555 A DC 5 8_555 1.012 1.137 7.032 2.954 -0.331 35.369 1.969 -0.727 7.080 -0.544 -4.852
35.490 1 AA_DT1DG2:DC5DA6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_555 A DA 3 1_555 A DT 4 8_555 -1.280 0.663 3.277 -6.290 -0.193 30.818 1.260 1.137 3.460 -0.358 11.683
31.439 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DA 3 1_555 A DT 4 8_555 A DT 4 1_555 A DA 3 8_555 0.000 -0.487 2.887 0.000 3.206 32.510 -1.352 0.000 2.827 5.709 0.000
32.663 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DT 4 1_555 A DA 3 8_555 A DC 5 1_555 A DG 2 8_555 1.280 0.663 3.277 6.290 -0.193 30.818 1.260 -1.137 3.460 -0.358 -11.683
31.439 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_555 A DA 6 1_555 A DT 1 8_555 -1.012 1.137 7.032 -2.954 -0.331 35.369 1.969 0.727 7.080 -0.544 4.852
35.490 5 AA_DC5DA6:DT1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 1D67
_atom_sites.fract_transf_matrix[1][1] 0.035474
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035474
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018950
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DT A 1 1 ? -18.786 20.553 23.446 1.00 31.11 ? 1 DT A "O5'" 1
ATOM 2 C "C5'" . DT A 1 1 ? -17.994 21.594 24.068 1.00 22.87 ? 1 DT A "C5'" 1
ATOM 3 C "C4'" . DT A 1 1 ? -16.629 21.001 24.184 1.00 25.12 ? 1 DT A "C4'" 1
ATOM 4 O "O4'" . DT A 1 1 ? -16.598 19.812 24.897 1.00 19.23 ? 1 DT A "O4'" 1
ATOM 5 C "C3'" . DT A 1 1 ? -15.826 20.801 22.886 1.00 24.04 ? 1 DT A "C3'" 1
ATOM 6 O "O3'" . DT A 1 1 ? -14.631 21.594 22.997 1.00 26.82 ? 1 DT A "O3'" 1
ATOM 7 C "C2'" . DT A 1 1 ? -15.443 19.321 22.902 1.00 20.33 ? 1 DT A "C2'" 1
ATOM 8 C "C1'" . DT A 1 1 ? -15.555 18.969 24.385 1.00 13.54 ? 1 DT A "C1'" 1
ATOM 9 N N1 . DT A 1 1 ? -16.074 17.588 24.485 1.00 13.26 ? 1 DT A N1 1
ATOM 10 C C2 . DT A 1 1 ? -15.110 16.593 24.622 1.00 11.15 ? 1 DT A C2 1
ATOM 11 O O2 . DT A 1 1 ? -13.920 16.804 24.686 1.00 15.09 ? 1 DT A O2 1
ATOM 12 N N3 . DT A 1 1 ? -15.575 15.307 24.707 1.00 9.98 ? 1 DT A N3 1
ATOM 13 C C4 . DT A 1 1 ? -16.900 14.997 24.628 1.00 7.13 ? 1 DT A C4 1
ATOM 14 O O4 . DT A 1 1 ? -17.241 13.782 24.691 1.00 14.19 ? 1 DT A O4 1
ATOM 15 C C5 . DT A 1 1 ? -17.853 16.057 24.459 1.00 10.24 ? 1 DT A C5 1
ATOM 16 C C7 . DT A 1 1 ? -19.333 15.772 24.385 1.00 14.94 ? 1 DT A C7 1
ATOM 17 C C6 . DT A 1 1 ? -17.410 17.323 24.401 1.00 11.39 ? 1 DT A C6 1
ATOM 18 P P . DG A 1 2 ? -14.301 22.772 21.926 1.00 29.75 ? 2 DG A P 1
ATOM 19 O OP1 . DG A 1 2 ? -13.199 23.412 22.754 1.00 30.91 ? 2 DG A OP1 1
ATOM 20 O OP2 . DG A 1 2 ? -15.454 23.508 21.504 1.00 31.35 ? 2 DG A OP2 1
ATOM 21 O "O5'" . DG A 1 2 ? -13.610 21.977 20.718 1.00 23.16 ? 2 DG A "O5'" 1
ATOM 22 C "C5'" . DG A 1 2 ? -12.412 21.199 21.182 1.00 21.09 ? 2 DG A "C5'" 1
ATOM 23 C "C4'" . DG A 1 2 ? -11.958 20.325 20.037 1.00 21.42 ? 2 DG A "C4'" 1
ATOM 24 O "O4'" . DG A 1 2 ? -12.745 19.158 19.937 1.00 21.37 ? 2 DG A "O4'" 1
ATOM 25 C "C3'" . DG A 1 2 ? -12.003 21.021 18.670 1.00 20.79 ? 2 DG A "C3'" 1
ATOM 26 O "O3'" . DG A 1 2 ? -10.873 20.683 17.868 1.00 27.73 ? 2 DG A "O3'" 1
ATOM 27 C "C2'" . DG A 1 2 ? -13.337 20.486 18.063 1.00 18.21 ? 2 DG A "C2'" 1
ATOM 28 C "C1'" . DG A 1 2 ? -13.235 19.090 18.580 1.00 19.33 ? 2 DG A "C1'" 1
ATOM 29 N N9 . DG A 1 2 ? -14.425 18.284 18.427 1.00 14.55 ? 2 DG A N9 1
ATOM 30 C C8 . DG A 1 2 ? -15.750 18.642 18.406 1.00 14.14 ? 2 DG A C8 1
ATOM 31 N N7 . DG A 1 2 ? -16.564 17.596 18.290 1.00 16.61 ? 2 DG A N7 1
ATOM 32 C C5 . DG A 1 2 ? -15.685 16.486 18.227 1.00 14.22 ? 2 DG A C5 1
ATOM 33 C C6 . DG A 1 2 ? -15.941 15.130 18.111 1.00 10.71 ? 2 DG A C6 1
ATOM 34 O O6 . DG A 1 2 ? -17.052 14.594 18.021 1.00 11.18 ? 2 DG A O6 1
ATOM 35 N N1 . DG A 1 2 ? -14.817 14.411 18.142 1.00 8.76 ? 2 DG A N1 1
ATOM 36 C C2 . DG A 1 2 ? -13.568 14.845 18.237 1.00 8.40 ? 2 DG A C2 1
ATOM 37 N N2 . DG A 1 2 ? -12.592 13.965 18.237 1.00 9.43 ? 2 DG A N2 1
ATOM 38 N N3 . DG A 1 2 ? -13.269 16.139 18.332 1.00 12.11 ? 2 DG A N3 1
ATOM 39 C C4 . DG A 1 2 ? -14.385 16.891 18.338 1.00 12.70 ? 2 DG A C4 1
ATOM 40 P P . DA A 1 3 ? -10.126 21.791 16.939 1.00 29.01 ? 3 DA A P 1
ATOM 41 O OP1 . DA A 1 3 ? -9.531 22.913 17.736 1.00 31.90 ? 3 DA A OP1 1
ATOM 42 O OP2 . DA A 1 3 ? -11.234 22.169 15.995 1.00 31.28 ? 3 DA A OP2 1
ATOM 43 O "O5'" . DA A 1 3 ? -8.880 21.024 16.316 1.00 26.60 ? 3 DA A "O5'" 1
ATOM 44 C "C5'" . DA A 1 3 ? -8.045 20.373 17.324 1.00 21.24 ? 3 DA A "C5'" 1
ATOM 45 C "C4'" . DA A 1 3 ? -7.924 18.997 16.754 1.00 19.19 ? 3 DA A "C4'" 1
ATOM 46 O "O4'" . DA A 1 3 ? -9.015 18.154 16.960 1.00 16.17 ? 3 DA A "O4'" 1
ATOM 47 C "C3'" . DA A 1 3 ? -7.476 18.859 15.314 1.00 17.69 ? 3 DA A "C3'" 1
ATOM 48 O "O3'" . DA A 1 3 ? -6.250 18.121 15.261 1.00 20.05 ? 3 DA A "O3'" 1
ATOM 49 C "C2'" . DA A 1 3 ? -8.674 18.185 14.638 1.00 19.59 ? 3 DA A "C2'" 1
ATOM 50 C "C1'" . DA A 1 3 ? -9.243 17.343 15.773 1.00 17.61 ? 3 DA A "C1'" 1
ATOM 51 N N9 . DA A 1 3 ? -10.687 17.210 15.535 1.00 15.12 ? 3 DA A N9 1
ATOM 52 C C8 . DA A 1 3 ? -11.623 18.236 15.520 1.00 15.76 ? 3 DA A C8 1
ATOM 53 N N7 . DA A 1 3 ? -12.826 17.796 15.288 1.00 15.36 ? 3 DA A N7 1
ATOM 54 C C5 . DA A 1 3 ? -12.688 16.407 15.145 1.00 11.26 ? 3 DA A C5 1
ATOM 55 C C6 . DA A 1 3 ? -13.633 15.395 14.871 1.00 11.11 ? 3 DA A C6 1
ATOM 56 N N6 . DA A 1 3 ? -14.949 15.628 14.749 1.00 11.07 ? 3 DA A N6 1
ATOM 57 N N1 . DA A 1 3 ? -13.142 14.134 14.802 1.00 10.61 ? 3 DA A N1 1
ATOM 58 C C2 . DA A 1 3 ? -11.834 13.906 14.976 1.00 10.58 ? 3 DA A C2 1
ATOM 59 N N3 . DA A 1 3 ? -10.864 14.783 15.229 1.00 12.09 ? 3 DA A N3 1
ATOM 60 C C4 . DA A 1 3 ? -11.363 16.051 15.282 1.00 15.18 ? 3 DA A C4 1
ATOM 61 P P . DT A 1 4 ? -5.514 18.019 13.826 1.00 27.21 ? 4 DT A P 1
ATOM 62 O OP1 . DT A 1 4 ? -4.054 17.994 14.142 1.00 28.76 ? 4 DT A OP1 1
ATOM 63 O OP2 . DT A 1 4 ? -5.965 19.203 13.055 1.00 24.20 ? 4 DT A OP2 1
ATOM 64 O "O5'" . DT A 1 4 ? -6.106 16.708 13.208 1.00 22.04 ? 4 DT A "O5'" 1
ATOM 65 C "C5'" . DT A 1 4 ? -5.497 15.454 13.599 1.00 21.41 ? 4 DT A "C5'" 1
ATOM 66 C "C4'" . DT A 1 4 ? -6.275 14.394 12.849 1.00 21.82 ? 4 DT A "C4'" 1
ATOM 67 O "O4'" . DT A 1 4 ? -7.628 14.611 12.918 1.00 21.22 ? 4 DT A "O4'" 1
ATOM 68 C "C3'" . DT A 1 4 ? -5.920 14.247 11.382 1.00 20.97 ? 4 DT A "C3'" 1
ATOM 69 O "O3'" . DT A 1 4 ? -5.367 12.956 11.156 1.00 24.36 ? 4 DT A "O3'" 1
ATOM 70 C "C2'" . DT A 1 4 ? -7.231 14.507 10.638 1.00 20.90 ? 4 DT A "C2'" 1
ATOM 71 C "C1'" . DT A 1 4 ? -8.248 14.070 11.652 1.00 17.08 ? 4 DT A "C1'" 1
ATOM 72 N N1 . DT A 1 4 ? -9.528 14.791 11.609 1.00 11.21 ? 4 DT A N1 1
ATOM 73 C C2 . DT A 1 4 ? -10.698 14.022 11.662 1.00 13.06 ? 4 DT A C2 1
ATOM 74 O O2 . DT A 1 4 ? -10.633 12.793 11.652 1.00 14.66 ? 4 DT A O2 1
ATOM 75 N N3 . DT A 1 4 ? -11.876 14.684 11.689 1.00 11.11 ? 4 DT A N3 1
ATOM 76 C C4 . DT A 1 4 ? -11.995 16.043 11.710 1.00 8.99 ? 4 DT A C4 1
ATOM 77 O O4 . DT A 1 4 ? -13.108 16.576 11.699 1.00 15.81 ? 4 DT A O4 1
ATOM 78 C C5 . DT A 1 4 ? -10.808 16.815 11.710 1.00 10.35 ? 4 DT A C5 1
ATOM 79 C C7 . DT A 1 4 ? -10.867 18.312 11.731 1.00 10.51 ? 4 DT A C7 1
ATOM 80 C C6 . DT A 1 4 ? -9.618 16.178 11.657 1.00 12.08 ? 4 DT A C6 1
ATOM 81 P P . DC A 1 5 ? -4.460 12.626 9.884 1.00 29.16 ? 5 DC A P 1
ATOM 82 O OP1 . DC A 1 5 ? -3.741 11.394 10.179 1.00 29.88 ? 5 DC A OP1 1
ATOM 83 O OP2 . DC A 1 5 ? -3.747 13.892 9.557 1.00 29.85 ? 5 DC A OP2 1
ATOM 84 O "O5'" . DC A 1 5 ? -5.525 12.322 8.681 1.00 22.87 ? 5 DC A "O5'" 1
ATOM 85 C "C5'" . DC A 1 5 ? -6.216 11.062 8.860 1.00 22.39 ? 5 DC A "C5'" 1
ATOM 86 C "C4'" . DC A 1 5 ? -7.344 11.220 7.873 1.00 21.28 ? 5 DC A "C4'" 1
ATOM 87 O "O4'" . DC A 1 5 ? -8.372 12.040 8.406 1.00 18.72 ? 5 DC A "O4'" 1
ATOM 88 C "C3'" . DC A 1 5 ? -6.921 11.758 6.512 1.00 23.00 ? 5 DC A "C3'" 1
ATOM 89 O "O3'" . DC A 1 5 ? -7.569 11.104 5.419 1.00 24.20 ? 5 DC A "O3'" 1
ATOM 90 C "C2'" . DC A 1 5 ? -7.431 13.221 6.607 1.00 18.65 ? 5 DC A "C2'" 1
ATOM 91 C "C1'" . DC A 1 5 ? -8.592 13.091 7.546 1.00 18.60 ? 5 DC A "C1'" 1
ATOM 92 N N1 . DC A 1 5 ? -9.401 14.264 7.810 1.00 14.91 ? 5 DC A N1 1
ATOM 93 C C2 . DC A 1 5 ? -10.755 14.067 8.074 1.00 14.91 ? 5 DC A C2 1
ATOM 94 O O2 . DC A 1 5 ? -11.194 12.905 8.137 1.00 11.93 ? 5 DC A O2 1
ATOM 95 N N3 . DC A 1 5 ? -11.510 15.152 8.280 1.00 11.90 ? 5 DC A N3 1
ATOM 96 C C4 . DC A 1 5 ? -10.969 16.407 8.259 1.00 13.55 ? 5 DC A C4 1
ATOM 97 N N4 . DC A 1 5 ? -11.752 17.450 8.443 1.00 10.38 ? 5 DC A N4 1
ATOM 98 C C5 . DC A 1 5 ? -9.610 16.598 7.984 1.00 13.44 ? 5 DC A C5 1
ATOM 99 C C6 . DC A 1 5 ? -8.857 15.513 7.778 1.00 15.79 ? 5 DC A C6 1
ATOM 100 P P . DA A 1 6 ? -6.763 10.112 4.449 1.00 25.96 ? 6 DA A P 1
ATOM 101 O OP1 . DA A 1 6 ? -6.010 9.151 5.277 1.00 25.39 ? 6 DA A OP1 1
ATOM 102 O OP2 . DA A 1 6 ? -5.985 10.969 3.525 1.00 24.28 ? 6 DA A OP2 1
ATOM 103 O "O5'" . DA A 1 6 ? -7.989 9.272 3.752 1.00 18.70 ? 6 DA A "O5'" 1
ATOM 104 C "C5'" . DA A 1 6 ? -8.857 8.443 4.501 1.00 16.69 ? 6 DA A "C5'" 1
ATOM 105 C "C4'" . DA A 1 6 ? -9.900 7.899 3.514 1.00 17.07 ? 6 DA A "C4'" 1
ATOM 106 O "O4'" . DA A 1 6 ? -10.816 8.888 3.103 1.00 17.10 ? 6 DA A "O4'" 1
ATOM 107 C "C3'" . DA A 1 6 ? -9.314 7.346 2.195 1.00 16.18 ? 6 DA A "C3'" 1
ATOM 108 O "O3'" . DA A 1 6 ? -10.219 6.300 1.799 1.00 17.68 ? 6 DA A "O3'" 1
ATOM 109 C "C2'" . DA A 1 6 ? -9.404 8.606 1.282 1.00 16.17 ? 6 DA A "C2'" 1
ATOM 110 C "C1'" . DA A 1 6 ? -10.636 9.328 1.710 1.00 15.26 ? 6 DA A "C1'" 1
ATOM 111 N N9 . DA A 1 6 ? -10.585 10.819 1.657 1.00 9.47 ? 6 DA A N9 1
ATOM 112 C C8 . DA A 1 6 ? -9.463 11.617 1.704 1.00 11.52 ? 6 DA A C8 1
ATOM 113 N N7 . DA A 1 6 ? -9.706 12.880 1.673 1.00 13.69 ? 6 DA A N7 1
ATOM 114 C C5 . DA A 1 6 ? -11.107 12.950 1.625 1.00 9.22 ? 6 DA A C5 1
ATOM 115 C C6 . DA A 1 6 ? -11.981 14.072 1.541 1.00 8.03 ? 6 DA A C6 1
ATOM 116 N N6 . DA A 1 6 ? -11.597 15.313 1.562 1.00 11.88 ? 6 DA A N6 1
ATOM 117 N N1 . DA A 1 6 ? -13.370 13.734 1.483 1.00 7.91 ? 6 DA A N1 1
ATOM 118 C C2 . DA A 1 6 ? -13.726 12.443 1.483 1.00 8.16 ? 6 DA A C2 1
ATOM 119 N N3 . DA A 1 6 ? -12.945 11.355 1.536 1.00 9.55 ? 6 DA A N3 1
ATOM 120 C C4 . DA A 1 6 ? -11.648 11.702 1.583 1.00 9.71 ? 6 DA A C4 1
HETATM 121 C C1 . DM5 B 2 . ? -12.748 18.560 4.966 1.00 16.39 ? 7 DM5 A C1 1
HETATM 122 C C2 . DM5 B 2 . ? -11.592 19.243 4.982 1.00 16.10 ? 7 DM5 A C2 1
HETATM 123 C C3 . DM5 B 2 . ? -10.447 18.619 4.913 1.00 16.61 ? 7 DM5 A C3 1
HETATM 124 C C4 . DM5 B 2 . ? -10.278 17.295 4.828 1.00 12.99 ? 7 DM5 A C4 1
HETATM 125 C C5 . DM5 B 2 . ? -11.456 16.522 4.865 1.00 15.05 ? 7 DM5 A C5 1
HETATM 126 C C6 . DM5 B 2 . ? -11.392 14.986 4.813 1.00 11.60 ? 7 DM5 A C6 1
HETATM 127 O O6 . DM5 B 2 . ? -10.354 14.385 4.723 1.00 15.45 ? 7 DM5 A O6 1
HETATM 128 C C7 . DM5 B 2 . ? -12.717 14.290 4.834 1.00 8.69 ? 7 DM5 A C7 1
HETATM 129 C C8 . DM5 B 2 . ? -12.674 12.891 4.781 1.00 9.41 ? 7 DM5 A C8 1
HETATM 130 O O8 . DM5 B 2 . ? -11.516 12.167 4.781 1.00 12.05 ? 7 DM5 A O8 1
HETATM 131 C C9 . DM5 B 2 . ? -13.889 12.147 4.770 1.00 12.09 ? 7 DM5 A C9 1
HETATM 132 C C10 . DM5 B 2 . ? -13.827 10.650 4.886 1.00 16.39 ? 7 DM5 A C10 1
HETATM 133 O O10 . DM5 B 2 . ? -13.215 10.419 6.121 1.00 17.52 ? 7 DM5 A O10 1
HETATM 134 C C11 . DM5 B 2 . ? -15.183 10.033 4.649 1.00 13.38 ? 7 DM5 A C11 1
HETATM 135 C C12 . DM5 B 2 . ? -16.316 10.721 5.467 1.00 16.26 ? 7 DM5 A C12 1
HETATM 136 O O12 . DM5 B 2 . ? -16.133 10.740 6.876 1.00 14.12 ? 7 DM5 A O12 1
HETATM 137 C C13 . DM5 B 2 . ? -17.613 10.044 5.040 1.00 17.39 ? 7 DM5 A C13 1
HETATM 138 O O13 . DM5 B 2 . ? -18.301 10.292 3.995 1.00 19.31 ? 7 DM5 A O13 1
HETATM 139 C C14 . DM5 B 2 . ? -18.036 8.857 5.747 1.00 17.28 ? 7 DM5 A C14 1
HETATM 140 C C15 . DM5 B 2 . ? -16.412 12.122 4.897 1.00 12.35 ? 7 DM5 A C15 1
HETATM 141 C C16 . DM5 B 2 . ? -15.099 12.829 4.818 1.00 12.23 ? 7 DM5 A C16 1
HETATM 142 C C17 . DM5 B 2 . ? -15.082 14.273 4.886 1.00 10.53 ? 7 DM5 A C17 1
HETATM 143 O O17 . DM5 B 2 . ? -16.297 14.980 4.781 1.00 13.06 ? 7 DM5 A O17 1
HETATM 144 C C18 . DM5 B 2 . ? -13.881 14.966 4.876 1.00 9.30 ? 7 DM5 A C18 1
HETATM 145 C C19 . DM5 B 2 . ? -13.917 16.392 4.923 1.00 10.27 ? 7 DM5 A C19 1
HETATM 146 O O19 . DM5 B 2 . ? -14.991 17.075 4.934 1.00 13.77 ? 7 DM5 A O19 1
HETATM 147 C C20 . DM5 B 2 . ? -12.708 17.148 4.918 1.00 10.70 ? 7 DM5 A C20 1
HETATM 148 C "C1'" . DM5 B 2 . ? -12.336 9.280 6.459 1.00 19.80 ? 7 DM5 A "C1'" 1
HETATM 149 C "C2'" . DM5 B 2 . ? -11.149 9.678 7.377 1.00 19.78 ? 7 DM5 A "C2'" 1
HETATM 150 C "C3'" . DM5 B 2 . ? -11.674 9.810 8.844 1.00 25.64 ? 7 DM5 A "C3'" 1
HETATM 151 N "N3'" . DM5 B 2 . ? -10.659 10.591 9.583 1.00 23.88 ? 7 DM5 A "N3'" 1
HETATM 152 C "C4'" . DM5 B 2 . ? -12.533 8.626 9.282 1.00 22.51 ? 7 DM5 A "C4'" 1
HETATM 153 O "O4'" . DM5 B 2 . ? -11.476 7.547 9.134 1.00 26.72 ? 7 DM5 A "O4'" 1
HETATM 154 C "C5'" . DM5 B 2 . ? -13.627 8.511 8.348 1.00 21.62 ? 7 DM5 A "C5'" 1
HETATM 155 O "O5'" . DM5 B 2 . ? -13.193 8.268 7.018 1.00 22.81 ? 7 DM5 A "O5'" 1
HETATM 156 C "C6'" . DM5 B 2 . ? -14.462 7.490 8.876 1.00 23.34 ? 7 DM5 A "C6'" 1
HETATM 157 O O . HOH C 3 . ? -6.921 18.529 10.012 1.00 44.45 ? 8 HOH A O 1
HETATM 158 O O . HOH C 3 . ? -18.930 18.287 18.237 1.00 42.14 ? 9 HOH A O 1
HETATM 159 O O . HOH C 3 . ? -15.000 19.364 15.024 1.00 36.59 ? 10 HOH A O 1
HETATM 160 O O . HOH C 3 . ? -10.318 20.011 8.322 1.00 28.21 ? 11 HOH A O 1
HETATM 161 O O . HOH C 3 . ? -13.148 21.430 13.277 1.00 55.23 ? 12 HOH A O 1
HETATM 162 O O . HOH C 3 . ? -15.809 22.329 19.150 1.00 53.69 ? 13 HOH A O 1
HETATM 163 O O . HOH C 3 . ? -3.848 17.647 17.097 1.00 38.70 ? 14 HOH A O 1
HETATM 164 O O . HOH C 3 . ? -12.838 6.408 1.098 1.00 41.44 ? 15 HOH A O 1
HETATM 165 O O . HOH C 3 . ? -12.711 24.754 18.475 1.00 55.00 ? 16 HOH A O 1
HETATM 166 O O . HOH C 3 . ? -11.253 9.782 12.459 1.00 29.30 ? 17 HOH A O 1
HETATM 167 O O . HOH C 3 . ? -14.803 6.106 5.646 1.00 57.54 ? 18 HOH A O 1
HETATM 168 O O . HOH C 3 . ? -12.153 5.077 10.929 1.00 55.45 ? 19 HOH A O 1
HETATM 169 O O . HOH C 3 . ? -20.469 19.341 24.711 1.00 37.23 ? 20 HOH A O 1
HETATM 170 O O . HOH C 3 . ? -14.640 8.800 1.599 1.00 23.04 ? 21 HOH A O 1
HETATM 171 O O . HOH C 3 . ? -19.305 12.119 25.039 1.00 22.13 ? 22 HOH A O 1
HETATM 172 O O . HOH C 3 . ? -22.008 12.886 24.570 1.00 40.95 ? 23 HOH A O 1
HETATM 173 O O . HOH C 3 . ? -3.955 8.587 9.741 1.00 46.78 ? 24 HOH A O 1
HETATM 174 O O . HOH C 3 . ? -19.042 20.720 20.126 1.00 55.77 ? 25 HOH A O 1
HETATM 175 O O . HOH C 3 . ? -6.545 10.082 0.921 1.00 56.50 ? 26 HOH A O 1
HETATM 176 O O . HOH C 3 . ? -9.393 16.604 1.230 1.00 43.40 ? 27 HOH A O 1
HETATM 177 O O . HOH C 3 . ? -18.075 6.309 3.034 1.00 62.69 ? 28 HOH A O 1
HETATM 178 O O . HOH C 3 . ? -18.282 11.698 1.087 1.00 53.54 ? 29 HOH A O 1
HETATM 179 O O . HOH C 3 . ? -8.378 20.923 12.828 1.00 40.48 ? 30 HOH A O 1
HETATM 180 O O . HOH C 3 . ? -10.033 4.110 3.720 1.00 48.43 ? 31 HOH A O 1
HETATM 181 O O . HOH C 3 . ? -13.554 21.303 8.317 1.00 56.31 ? 32 HOH A O 1
HETATM 182 O O . HOH C 3 . ? -9.875 6.588 7.551 1.00 52.59 ? 33 HOH A O 1
HETATM 183 O O . HOH C 3 . ? -1.562 16.790 12.710 1.00 53.47 ? 34 HOH A O 1
HETATM 184 O O . HOH C 3 . ? -10.061 24.719 19.902 1.00 60.62 ? 35 HOH A O 1
HETATM 185 O O . HOH C 3 . ? -7.676 24.810 16.353 1.00 41.17 ? 36 HOH A O 1
HETATM 186 O O . HOH C 3 . ? -7.512 14.839 2.631 1.00 55.78 ? 37 HOH A O 1
HETATM 187 O O . HOH C 3 . ? -17.726 17.571 14.929 1.00 46.32 ? 38 HOH A O 1
HETATM 188 O O . HOH C 3 . ? -10.641 24.709 22.102 1.00 50.89 ? 39 HOH A O 1
HETATM 189 O O . HOH C 3 . ? -2.121 16.470 10.131 1.00 57.23 ? 40 HOH A O 1
HETATM 190 O O . HOH C 3 . ? -4.127 8.341 6.844 1.00 57.15 ? 41 HOH A O 1
HETATM 191 O O . HOH C 3 . ? -8.559 14.597 15.052 1.00 42.15 ? 42 HOH A O 1
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