data_1D54
#
_entry.id 1D54
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1D54 pdb_00001d54 10.2210/pdb1d54/pdb
RCSB DDF035 ? ?
WWPDB D_1000172655 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1993-04-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1D54
_pdbx_database_status.recvd_initial_deposition_date 1992-01-06
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Leonard, G.A.' 1
'Brown, T.' 2
'Hunter, W.N.' 3
#
_citation.id primary
_citation.title
;Anthracycline binding to DNA. High-resolution structure of d(TGTACA) complexed with 4'-epiadriamycin.
;
_citation.journal_abbrev Eur.J.Biochem.
_citation.journal_volume 204
_citation.page_first 69
_citation.page_last 74
_citation.year 1992
_citation.journal_id_ASTM EJBCAI
_citation.country IX
_citation.journal_id_ISSN 0014-2956
_citation.journal_id_CSD 0262
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 1740157
_citation.pdbx_database_id_DOI 10.1111/j.1432-1033.1992.tb16606.x
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Leonard, G.A.' 1 ?
primary 'Brown, T.' 2 ?
primary 'Hunter, W.N.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*TP*GP*TP*AP*CP*A)-3')
;
1808.229 1 ? ? ? ?
2 non-polymer syn "4'-EPIDOXORUBICIN" 544.527 1 ? ? ? ?
3 water nat water 18.015 33 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DT)(DA)(DC)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can TGTACA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "4'-EPIDOXORUBICIN" DM6
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DA n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DM6 non-polymer . "4'-EPIDOXORUBICIN" "4'-EPIADRIAMYCIN" 'C27 H30 N O11 1' 544.527
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT T A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DA 6 6 6 DA A A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM6 1 7 7 DM6 DM6 A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1D54
_cell.length_a 28.020
_cell.length_b 28.020
_cell.length_c 52.930
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1D54
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 1D54
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.87
_exptl_crystal.density_percent_sol 57.18
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 277.00
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.50
_exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, temperature 277.00K'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 'MG ACETATE' ? ? ?
1 5 1 SPERMINE_HCL ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 297.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type RIGAKU
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1D54
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high ?
_reflns.number_obs 5644
_reflns.number_all 11022
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1D54
_refine.ls_number_reflns_obs 2381
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 3.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 7.000
_refine.ls_d_res_high 1.400
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1700000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 39
_refine_hist.number_atoms_solvent 33
_refine_hist.number_atoms_total 192
_refine_hist.d_res_high 1.400
_refine_hist.d_res_low 7.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d 0.033 ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 1D54
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1D54
_struct.title
;ANTHRACYCLINE BINDING TO DNA: HIGH RESOLUTION STRUCTURE OF D(TGTACA) COMPLEXED WITH 4'-EPIADRIAMYCIN
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1D54
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1D54
_struct_ref.pdbx_db_accession 1D54
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1D54
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1D54
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.4650000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 1 A DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 1 A DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 3 A DA 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 3 A DA 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 4 A DT 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 4 A DT 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 1 N3 ? ? A DA 6 A DT 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 1 O4 ? ? A DA 6 A DT 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DM6 7 ? 12 'BINDING SITE FOR RESIDUE DM6 A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 12 DT A 1 ? DT A 1 . ? 8_555 ?
2 AC1 12 DG A 2 ? DG A 2 . ? 8_555 ?
3 AC1 12 DT A 3 ? DT A 3 . ? 8_555 ?
4 AC1 12 DC A 5 ? DC A 5 . ? 1_555 ?
5 AC1 12 DA A 6 ? DA A 6 . ? 1_555 ?
6 AC1 12 HOH C . ? HOH A 9 . ? 1_555 ?
7 AC1 12 HOH C . ? HOH A 18 . ? 1_555 ?
8 AC1 12 HOH C . ? HOH A 19 . ? 8_555 ?
9 AC1 12 HOH C . ? HOH A 21 . ? 1_555 ?
10 AC1 12 HOH C . ? HOH A 25 . ? 1_555 ?
11 AC1 12 HOH C . ? HOH A 29 . ? 1_555 ?
12 AC1 12 HOH C . ? HOH A 30 . ? 1_555 ?
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 "O4'"
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DG
_pdbx_validate_rmsd_bond.auth_seq_id_1 2
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 "C4'"
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DG
_pdbx_validate_rmsd_bond.auth_seq_id_2 2
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.376
_pdbx_validate_rmsd_bond.bond_target_value 1.446
_pdbx_validate_rmsd_bond.bond_deviation -0.070
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.010
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? "C2'" A DT 1 ? ? 100.52 105.90 -5.38 0.80 N
2 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 121.12 127.20 -6.08 0.60 N
3 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 119.75 115.20 4.55 0.60 N
4 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 102.21 109.40 -7.19 0.80 N
5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.01 108.30 6.71 0.30 N
6 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.70 111.50 3.20 0.50 N
7 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 115.06 119.90 -4.84 0.70 N
8 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 127.13 119.70 7.43 1.20 Y
9 1 "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? 104.54 109.40 -4.86 0.80 N
10 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 122.32 127.20 -4.88 0.60 N
11 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 119.42 115.20 4.22 0.60 N
12 1 "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 102.02 109.40 -7.38 0.80 N
13 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 125.64 129.30 -3.66 0.50 N
14 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.49 109.40 -6.91 0.80 N
15 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.32 108.30 6.02 0.30 N
16 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 101.06 108.00 -6.94 0.70 N
17 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.80 118.60 4.20 0.60 N
18 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 124.56 129.30 -4.74 0.50 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
'ALL DRUG ATOMS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
'ALL DRUG ATOMS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DM6 C1 C Y N 108
DM6 C2 C Y N 109
DM6 C3 C Y N 110
DM6 C4 C Y N 111
DM6 C5 C N N 112
DM6 C6 C Y N 113
DM6 C7 C N S 114
DM6 C8 C N N 115
DM6 C9 C N S 116
DM6 C10 C N N 117
DM6 C11 C Y N 118
DM6 C12 C N N 119
DM6 C13 C N N 120
DM6 C14 C N N 121
DM6 C15 C Y N 122
DM6 C16 C Y N 123
DM6 C17 C Y N 124
DM6 C18 C Y N 125
DM6 C19 C Y N 126
DM6 C20 C Y N 127
DM6 C21 C N N 128
DM6 O4 O N N 129
DM6 O5 O N N 130
DM6 O6 O N N 131
DM6 O7 O N N 132
DM6 O9 O N N 133
DM6 O11 O N N 134
DM6 O12 O N N 135
DM6 O13 O N N 136
DM6 O14 O N N 137
DM6 "C1'" C N R 138
DM6 "C2'" C N N 139
DM6 "C3'" C N S 140
DM6 "C4'" C N R 141
DM6 "C5'" C N S 142
DM6 "C6'" C N N 143
DM6 "O4'" O N N 144
DM6 "O5'" O N N 145
DM6 "N3'" N N N 146
DM6 H1 H N N 147
DM6 H2 H N N 148
DM6 H3 H N N 149
DM6 H7 H N N 150
DM6 H81 H N N 151
DM6 H82 H N N 152
DM6 H101 H N N 153
DM6 H102 H N N 154
DM6 H141 H N N 155
DM6 H142 H N N 156
DM6 H211 H N N 157
DM6 H212 H N N 158
DM6 H213 H N N 159
DM6 HO6 H N N 160
DM6 HO9 H N N 161
DM6 HO11 H N N 162
DM6 HO14 H N N 163
DM6 "H1'" H N N 164
DM6 "H2'1" H N N 165
DM6 "H2'2" H N N 166
DM6 "H3'" H N N 167
DM6 "H4'" H N N 168
DM6 "H5'" H N N 169
DM6 "H6'1" H N N 170
DM6 "H6'2" H N N 171
DM6 "H6'3" H N N 172
DM6 "HO'4" H N N 173
DM6 "HN'1" H N N 174
DM6 "HN'2" H N N 175
DM6 "HN'3" H N N 176
DT OP3 O N N 177
DT P P N N 178
DT OP1 O N N 179
DT OP2 O N N 180
DT "O5'" O N N 181
DT "C5'" C N N 182
DT "C4'" C N R 183
DT "O4'" O N N 184
DT "C3'" C N S 185
DT "O3'" O N N 186
DT "C2'" C N N 187
DT "C1'" C N R 188
DT N1 N N N 189
DT C2 C N N 190
DT O2 O N N 191
DT N3 N N N 192
DT C4 C N N 193
DT O4 O N N 194
DT C5 C N N 195
DT C7 C N N 196
DT C6 C N N 197
DT HOP3 H N N 198
DT HOP2 H N N 199
DT "H5'" H N N 200
DT "H5''" H N N 201
DT "H4'" H N N 202
DT "H3'" H N N 203
DT "HO3'" H N N 204
DT "H2'" H N N 205
DT "H2''" H N N 206
DT "H1'" H N N 207
DT H3 H N N 208
DT H71 H N N 209
DT H72 H N N 210
DT H73 H N N 211
DT H6 H N N 212
HOH O O N N 213
HOH H1 H N N 214
HOH H2 H N N 215
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DM6 C1 C2 doub Y N 113
DM6 C1 C15 sing Y N 114
DM6 C1 H1 sing N N 115
DM6 C2 C3 sing Y N 116
DM6 C2 H2 sing N N 117
DM6 C3 C4 doub Y N 118
DM6 C3 H3 sing N N 119
DM6 C4 C16 sing Y N 120
DM6 C4 O4 sing N N 121
DM6 C5 C16 sing N N 122
DM6 C5 C17 sing N N 123
DM6 C5 O5 doub N N 124
DM6 C6 C17 doub Y N 125
DM6 C6 C20 sing Y N 126
DM6 C6 O6 sing N N 127
DM6 C7 C8 sing N N 128
DM6 C7 C20 sing N N 129
DM6 C7 O7 sing N N 130
DM6 C7 H7 sing N N 131
DM6 C8 C9 sing N N 132
DM6 C8 H81 sing N N 133
DM6 C8 H82 sing N N 134
DM6 C9 C10 sing N N 135
DM6 C9 C13 sing N N 136
DM6 C9 O9 sing N N 137
DM6 C10 C19 sing N N 138
DM6 C10 H101 sing N N 139
DM6 C10 H102 sing N N 140
DM6 C11 C18 doub Y N 141
DM6 C11 C19 sing Y N 142
DM6 C11 O11 sing N N 143
DM6 C12 C15 sing N N 144
DM6 C12 C18 sing N N 145
DM6 C12 O12 doub N N 146
DM6 C13 C14 sing N N 147
DM6 C13 O13 doub N N 148
DM6 C14 O14 sing N N 149
DM6 C14 H141 sing N N 150
DM6 C14 H142 sing N N 151
DM6 C15 C16 doub Y N 152
DM6 C17 C18 sing Y N 153
DM6 C19 C20 doub Y N 154
DM6 C21 O4 sing N N 155
DM6 C21 H211 sing N N 156
DM6 C21 H212 sing N N 157
DM6 C21 H213 sing N N 158
DM6 O6 HO6 sing N N 159
DM6 O7 "C1'" sing N N 160
DM6 O9 HO9 sing N N 161
DM6 O11 HO11 sing N N 162
DM6 O14 HO14 sing N N 163
DM6 "C1'" "C2'" sing N N 164
DM6 "C1'" "O5'" sing N N 165
DM6 "C1'" "H1'" sing N N 166
DM6 "C2'" "C3'" sing N N 167
DM6 "C2'" "H2'1" sing N N 168
DM6 "C2'" "H2'2" sing N N 169
DM6 "C3'" "C4'" sing N N 170
DM6 "C3'" "N3'" sing N N 171
DM6 "C3'" "H3'" sing N N 172
DM6 "C4'" "C5'" sing N N 173
DM6 "C4'" "O4'" sing N N 174
DM6 "C4'" "H4'" sing N N 175
DM6 "C5'" "C6'" sing N N 176
DM6 "C5'" "O5'" sing N N 177
DM6 "C5'" "H5'" sing N N 178
DM6 "C6'" "H6'1" sing N N 179
DM6 "C6'" "H6'2" sing N N 180
DM6 "C6'" "H6'3" sing N N 181
DM6 "O4'" "HO'4" sing N N 182
DM6 "N3'" "HN'1" sing N N 183
DM6 "N3'" "HN'2" sing N N 184
DM6 "N3'" "HN'3" sing N N 185
DT OP3 P sing N N 186
DT OP3 HOP3 sing N N 187
DT P OP1 doub N N 188
DT P OP2 sing N N 189
DT P "O5'" sing N N 190
DT OP2 HOP2 sing N N 191
DT "O5'" "C5'" sing N N 192
DT "C5'" "C4'" sing N N 193
DT "C5'" "H5'" sing N N 194
DT "C5'" "H5''" sing N N 195
DT "C4'" "O4'" sing N N 196
DT "C4'" "C3'" sing N N 197
DT "C4'" "H4'" sing N N 198
DT "O4'" "C1'" sing N N 199
DT "C3'" "O3'" sing N N 200
DT "C3'" "C2'" sing N N 201
DT "C3'" "H3'" sing N N 202
DT "O3'" "HO3'" sing N N 203
DT "C2'" "C1'" sing N N 204
DT "C2'" "H2'" sing N N 205
DT "C2'" "H2''" sing N N 206
DT "C1'" N1 sing N N 207
DT "C1'" "H1'" sing N N 208
DT N1 C2 sing N N 209
DT N1 C6 sing N N 210
DT C2 O2 doub N N 211
DT C2 N3 sing N N 212
DT N3 C4 sing N N 213
DT N3 H3 sing N N 214
DT C4 O4 doub N N 215
DT C4 C5 sing N N 216
DT C5 C7 sing N N 217
DT C5 C6 doub N N 218
DT C7 H71 sing N N 219
DT C7 H72 sing N N 220
DT C7 H73 sing N N 221
DT C6 H6 sing N N 222
HOH O H1 sing N N 223
HOH O H2 sing N N 224
#
_ndb_struct_conf_na.entry_id 1D54
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 1 1_555 A DA 6 8_555 -0.136 -0.157 -0.024 9.289 0.365 -2.863 1 A_DT1:DA6_A A 1 ? A 6 ? 20 1
1 A DG 2 1_555 A DC 5 8_555 -0.039 -0.123 -0.417 -18.268 4.090 -0.257 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DT 3 1_555 A DA 4 8_555 -0.167 -0.084 -0.001 -6.255 -5.878 5.490 3 A_DT3:DA4_A A 3 ? A 4 ? 20 1
1 A DA 4 1_555 A DT 3 8_555 0.167 -0.084 -0.001 6.255 -5.878 5.490 4 A_DA4:DT3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_555 0.039 -0.123 -0.417 18.268 4.090 -0.257 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DA 6 1_555 A DT 1 8_555 0.136 -0.157 -0.024 -9.289 0.365 -2.863 6 A_DA6:DT1_A A 6 ? A 1 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 1 1_555 A DA 6 8_555 A DG 2 1_555 A DC 5 8_555 1.238 1.253 7.084 2.480 -3.613 38.704 2.825 -1.207 7.006 -5.430 -3.727
38.942 1 AA_DT1DG2:DC5DA6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_555 A DT 3 1_555 A DA 4 8_555 -0.855 0.091 3.135 -3.436 -1.599 27.272 0.574 0.978 3.206 -3.371 7.242
27.529 2 AA_DG2DT3:DA4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DT 3 1_555 A DA 4 8_555 A DA 4 1_555 A DT 3 8_555 0.000 0.476 3.240 0.000 12.560 37.195 -0.818 0.000 3.228 19.038 0.000
39.187 3 AA_DT3DA4:DT3DA4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DA 4 1_555 A DT 3 8_555 A DC 5 1_555 A DG 2 8_555 0.855 0.091 3.135 3.436 -1.599 27.272 0.574 -0.978 3.206 -3.371 -7.242
27.529 4 AA_DA4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_555 A DA 6 1_555 A DT 1 8_555 -1.238 1.253 7.084 -2.480 -3.613 38.704 2.825 1.207 7.006 -5.430 3.727
38.942 5 AA_DC5DA6:DT1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 1D54
_atom_sites.fract_transf_matrix[1][1] 0.035689
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035689
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018893
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DT A 1 1 ? -18.905 19.928 23.046 1.00 23.55 ? 1 DT A "O5'" 1
ATOM 2 C "C5'" . DT A 1 1 ? -18.468 21.049 23.882 1.00 14.24 ? 1 DT A "C5'" 1
ATOM 3 C "C4'" . DT A 1 1 ? -17.005 20.869 24.051 1.00 11.17 ? 1 DT A "C4'" 1
ATOM 4 O "O4'" . DT A 1 1 ? -16.725 19.743 24.824 1.00 16.67 ? 1 DT A "O4'" 1
ATOM 5 C "C3'" . DT A 1 1 ? -16.173 20.718 22.776 1.00 21.28 ? 1 DT A "C3'" 1
ATOM 6 O "O3'" . DT A 1 1 ? -14.943 21.424 23.030 1.00 22.15 ? 1 DT A "O3'" 1
ATOM 7 C "C2'" . DT A 1 1 ? -15.856 19.202 22.755 1.00 17.26 ? 1 DT A "C2'" 1
ATOM 8 C "C1'" . DT A 1 1 ? -15.705 18.877 24.263 1.00 15.89 ? 1 DT A "C1'" 1
ATOM 9 N N1 . DT A 1 1 ? -16.165 17.456 24.443 1.00 12.22 ? 1 DT A N1 1
ATOM 10 C C2 . DT A 1 1 ? -15.150 16.523 24.628 1.00 8.49 ? 1 DT A C2 1
ATOM 11 O O2 . DT A 1 1 ? -13.960 16.851 24.692 1.00 10.89 ? 1 DT A O2 1
ATOM 12 N N3 . DT A 1 1 ? -15.512 15.195 24.713 1.00 9.20 ? 1 DT A N3 1
ATOM 13 C C4 . DT A 1 1 ? -16.809 14.820 24.660 1.00 5.77 ? 1 DT A C4 1
ATOM 14 O O4 . DT A 1 1 ? -17.053 13.601 24.734 1.00 11.75 ? 1 DT A O4 1
ATOM 15 C C5 . DT A 1 1 ? -17.832 15.812 24.448 1.00 6.63 ? 1 DT A C5 1
ATOM 16 C C7 . DT A 1 1 ? -19.264 15.338 24.395 1.00 13.04 ? 1 DT A C7 1
ATOM 17 C C6 . DT A 1 1 ? -17.451 17.075 24.369 1.00 8.17 ? 1 DT A C6 1
ATOM 18 P P . DG A 1 2 ? -14.324 22.531 22.088 1.00 26.77 ? 2 DG A P 1
ATOM 19 O OP1 . DG A 1 2 ? -13.391 23.240 22.998 1.00 22.17 ? 2 DG A OP1 1
ATOM 20 O OP2 . DG A 1 2 ? -15.408 23.313 21.426 1.00 29.74 ? 2 DG A OP2 1
ATOM 21 O "O5'" . DG A 1 2 ? -13.570 21.637 20.971 1.00 17.70 ? 2 DG A "O5'" 1
ATOM 22 C "C5'" . DG A 1 2 ? -12.298 21.096 21.415 1.00 15.48 ? 2 DG A "C5'" 1
ATOM 23 C "C4'" . DG A 1 2 ? -11.836 20.334 20.203 1.00 11.27 ? 2 DG A "C4'" 1
ATOM 24 O "O4'" . DG A 1 2 ? -12.536 19.154 20.092 1.00 15.86 ? 2 DG A "O4'" 1
ATOM 25 C "C3'" . DG A 1 2 ? -11.908 21.068 18.880 1.00 12.95 ? 2 DG A "C3'" 1
ATOM 26 O "O3'" . DG A 1 2 ? -10.776 20.726 18.086 1.00 25.06 ? 2 DG A "O3'" 1
ATOM 27 C "C2'" . DG A 1 2 ? -13.153 20.446 18.250 1.00 13.45 ? 2 DG A "C2'" 1
ATOM 28 C "C1'" . DG A 1 2 ? -12.976 19.028 18.758 1.00 13.17 ? 2 DG A "C1'" 1
ATOM 29 N N9 . DG A 1 2 ? -14.158 18.213 18.578 1.00 12.21 ? 2 DG A N9 1
ATOM 30 C C8 . DG A 1 2 ? -15.481 18.591 18.557 1.00 12.08 ? 2 DG A C8 1
ATOM 31 N N7 . DG A 1 2 ? -16.302 17.585 18.383 1.00 19.58 ? 2 DG A N7 1
ATOM 32 C C5 . DG A 1 2 ? -15.489 16.465 18.277 1.00 11.73 ? 2 DG A C5 1
ATOM 33 C C6 . DG A 1 2 ? -15.781 15.089 18.139 1.00 7.72 ? 2 DG A C6 1
ATOM 34 O O6 . DG A 1 2 ? -16.896 14.590 17.970 1.00 12.39 ? 2 DG A O6 1
ATOM 35 N N1 . DG A 1 2 ? -14.680 14.265 18.139 1.00 10.47 ? 2 DG A N1 1
ATOM 36 C C2 . DG A 1 2 ? -13.424 14.755 18.293 1.00 6.78 ? 2 DG A C2 1
ATOM 37 N N2 . DG A 1 2 ? -12.404 13.912 18.330 1.00 9.39 ? 2 DG A N2 1
ATOM 38 N N3 . DG A 1 2 ? -13.102 16.039 18.457 1.00 11.15 ? 2 DG A N3 1
ATOM 39 C C4 . DG A 1 2 ? -14.170 16.840 18.446 1.00 11.49 ? 2 DG A C4 1
ATOM 40 P P . DT A 1 3 ? -10.037 21.645 17.028 1.00 30.45 ? 3 DT A P 1
ATOM 41 O OP1 . DT A 1 3 ? -9.356 22.794 17.710 1.00 28.26 ? 3 DT A OP1 1
ATOM 42 O OP2 . DT A 1 3 ? -11.096 22.032 16.080 1.00 26.36 ? 3 DT A OP2 1
ATOM 43 O "O5'" . DT A 1 3 ? -8.966 20.640 16.318 1.00 16.10 ? 3 DT A "O5'" 1
ATOM 44 C "C5'" . DT A 1 3 ? -8.067 19.984 17.234 1.00 11.23 ? 3 DT A "C5'" 1
ATOM 45 C "C4'" . DT A 1 3 ? -8.053 18.541 16.784 1.00 13.65 ? 3 DT A "C4'" 1
ATOM 46 O "O4'" . DT A 1 3 ? -9.294 17.905 16.959 1.00 13.67 ? 3 DT A "O4'" 1
ATOM 47 C "C3'" . DT A 1 3 ? -7.747 18.336 15.302 1.00 15.75 ? 3 DT A "C3'" 1
ATOM 48 O "O3'" . DT A 1 3 ? -6.344 18.118 15.186 1.00 13.32 ? 3 DT A "O3'" 1
ATOM 49 C "C2'" . DT A 1 3 ? -8.468 17.036 14.947 1.00 22.49 ? 3 DT A "C2'" 1
ATOM 50 C "C1'" . DT A 1 3 ? -9.403 16.792 16.070 1.00 15.81 ? 3 DT A "C1'" 1
ATOM 51 N N1 . DT A 1 3 ? -10.816 16.742 15.662 1.00 12.60 ? 3 DT A N1 1
ATOM 52 C C2 . DT A 1 3 ? -11.337 15.461 15.487 1.00 13.55 ? 3 DT A C2 1
ATOM 53 O O2 . DT A 1 3 ? -10.628 14.461 15.614 1.00 13.21 ? 3 DT A O2 1
ATOM 54 N N3 . DT A 1 3 ? -12.668 15.355 15.180 1.00 8.93 ? 3 DT A N3 1
ATOM 55 C C4 . DT A 1 3 ? -13.469 16.437 15.053 1.00 7.85 ? 3 DT A C4 1
ATOM 56 O O4 . DT A 1 3 ? -14.685 16.232 14.783 1.00 12.62 ? 3 DT A O4 1
ATOM 57 C C5 . DT A 1 3 ? -12.906 17.748 15.180 1.00 8.47 ? 3 DT A C5 1
ATOM 58 C C7 . DT A 1 3 ? -13.772 18.967 15.032 1.00 16.18 ? 3 DT A C7 1
ATOM 59 C C6 . DT A 1 3 ? -11.606 17.835 15.493 1.00 12.62 ? 3 DT A C6 1
ATOM 60 P P . DA A 1 4 ? -5.682 18.045 13.735 1.00 16.93 ? 4 DA A P 1
ATOM 61 O OP1 . DA A 1 4 ? -4.251 18.227 14.032 1.00 27.70 ? 4 DA A OP1 1
ATOM 62 O OP2 . DA A 1 4 ? -6.425 18.970 12.894 1.00 15.41 ? 4 DA A OP2 1
ATOM 63 O "O5'" . DA A 1 4 ? -6.007 16.585 13.180 1.00 12.44 ? 4 DA A "O5'" 1
ATOM 64 C "C5'" . DA A 1 4 ? -5.439 15.422 13.825 1.00 11.88 ? 4 DA A "C5'" 1
ATOM 65 C "C4'" . DA A 1 4 ? -5.789 14.315 12.846 1.00 13.75 ? 4 DA A "C4'" 1
ATOM 66 O "O4'" . DA A 1 4 ? -7.176 14.105 12.878 1.00 17.58 ? 4 DA A "O4'" 1
ATOM 67 C "C3'" . DA A 1 4 ? -5.352 14.528 11.401 1.00 15.07 ? 4 DA A "C3'" 1
ATOM 68 O "O3'" . DA A 1 4 ? -4.853 13.228 10.957 1.00 20.32 ? 4 DA A "O3'" 1
ATOM 69 C "C2'" . DA A 1 4 ? -6.677 14.828 10.692 1.00 12.58 ? 4 DA A "C2'" 1
ATOM 70 C "C1'" . DA A 1 4 ? -7.691 14.080 11.533 1.00 8.71 ? 4 DA A "C1'" 1
ATOM 71 N N9 . DA A 1 4 ? -8.961 14.817 11.602 1.00 10.52 ? 4 DA A N9 1
ATOM 72 C C8 . DA A 1 4 ? -9.134 16.173 11.703 1.00 13.97 ? 4 DA A C8 1
ATOM 73 N N7 . DA A 1 4 ? -10.373 16.540 11.766 1.00 11.47 ? 4 DA A N7 1
ATOM 74 C C5 . DA A 1 4 ? -11.079 15.347 11.703 1.00 6.46 ? 4 DA A C5 1
ATOM 75 C C6 . DA A 1 4 ? -12.477 15.080 11.698 1.00 6.78 ? 4 DA A C6 1
ATOM 76 N N6 . DA A 1 4 ? -13.405 16.005 11.682 1.00 12.03 ? 4 DA A N6 1
ATOM 77 N N1 . DA A 1 4 ? -12.816 13.766 11.613 1.00 9.40 ? 4 DA A N1 1
ATOM 78 C C2 . DA A 1 4 ? -11.878 12.791 11.496 1.00 10.42 ? 4 DA A C2 1
ATOM 79 N N3 . DA A 1 4 ? -10.558 12.982 11.465 1.00 11.46 ? 4 DA A N3 1
ATOM 80 C C4 . DA A 1 4 ? -10.219 14.285 11.581 1.00 9.83 ? 4 DA A C4 1
ATOM 81 P P . DC A 1 5 ? -4.071 12.940 9.612 1.00 20.06 ? 5 DC A P 1
ATOM 82 O OP1 . DC A 1 5 ? -3.233 11.738 9.893 1.00 26.61 ? 5 DC A OP1 1
ATOM 83 O OP2 . DC A 1 5 ? -3.385 14.178 9.178 1.00 18.16 ? 5 DC A OP2 1
ATOM 84 O "O5'" . DC A 1 5 ? -5.223 12.545 8.559 1.00 18.14 ? 5 DC A "O5'" 1
ATOM 85 C "C5'" . DC A 1 5 ? -5.893 11.261 8.702 1.00 17.85 ? 5 DC A "C5'" 1
ATOM 86 C "C4'" . DC A 1 5 ? -7.053 11.399 7.781 1.00 14.01 ? 5 DC A "C4'" 1
ATOM 87 O "O4'" . DC A 1 5 ? -8.098 12.175 8.299 1.00 17.25 ? 5 DC A "O4'" 1
ATOM 88 C "C3'" . DC A 1 5 ? -6.744 11.942 6.389 1.00 13.96 ? 5 DC A "C3'" 1
ATOM 89 O "O3'" . DC A 1 5 ? -7.495 11.116 5.462 1.00 13.72 ? 5 DC A "O3'" 1
ATOM 90 C "C2'" . DC A 1 5 ? -7.338 13.338 6.479 1.00 9.20 ? 5 DC A "C2'" 1
ATOM 91 C "C1'" . DC A 1 5 ? -8.552 13.029 7.262 1.00 8.38 ? 5 DC A "C1'" 1
ATOM 92 N N1 . DC A 1 5 ? -9.325 14.170 7.722 1.00 10.67 ? 5 DC A N1 1
ATOM 93 C C2 . DC A 1 5 ? -10.670 13.954 8.003 1.00 6.91 ? 5 DC A C2 1
ATOM 94 O O2 . DC A 1 5 ? -11.149 12.830 7.950 1.00 12.99 ? 5 DC A O2 1
ATOM 95 N N3 . DC A 1 5 ? -11.452 15.024 8.310 1.00 8.20 ? 5 DC A N3 1
ATOM 96 C C4 . DC A 1 5 ? -10.947 16.271 8.395 1.00 8.46 ? 5 DC A C4 1
ATOM 97 N N4 . DC A 1 5 ? -11.729 17.300 8.707 1.00 14.59 ? 5 DC A N4 1
ATOM 98 C C5 . DC A 1 5 ? -9.569 16.495 8.151 1.00 11.46 ? 5 DC A C5 1
ATOM 99 C C6 . DC A 1 5 ? -8.812 15.433 7.797 1.00 17.62 ? 5 DC A C6 1
ATOM 100 P P . DA A 1 6 ? -6.730 10.042 4.541 1.00 19.20 ? 6 DA A P 1
ATOM 101 O OP1 . DA A 1 6 ? -5.893 9.213 5.425 1.00 22.52 ? 6 DA A OP1 1
ATOM 102 O OP2 . DA A 1 6 ? -5.985 10.936 3.594 1.00 21.50 ? 6 DA A OP2 1
ATOM 103 O "O5'" . DA A 1 6 ? -7.885 9.258 3.790 1.00 12.44 ? 6 DA A "O5'" 1
ATOM 104 C "C5'" . DA A 1 6 ? -8.801 8.386 4.494 1.00 17.12 ? 6 DA A "C5'" 1
ATOM 105 C "C4'" . DA A 1 6 ? -9.801 7.918 3.467 1.00 12.07 ? 6 DA A "C4'" 1
ATOM 106 O "O4'" . DA A 1 6 ? -10.650 8.997 3.102 1.00 13.69 ? 6 DA A "O4'" 1
ATOM 107 C "C3'" . DA A 1 6 ? -9.202 7.375 2.170 1.00 9.56 ? 6 DA A "C3'" 1
ATOM 108 O "O3'" . DA A 1 6 ? -10.034 6.282 1.731 1.00 15.93 ? 6 DA A "O3'" 1
ATOM 109 C "C2'" . DA A 1 6 ? -9.230 8.577 1.249 1.00 14.11 ? 6 DA A "C2'" 1
ATOM 110 C "C1'" . DA A 1 6 ? -10.583 9.205 1.657 1.00 11.66 ? 6 DA A "C1'" 1
ATOM 111 N N9 . DA A 1 6 ? -10.474 10.664 1.588 1.00 5.06 ? 6 DA A N9 1
ATOM 112 C C8 . DA A 1 6 ? -9.375 11.449 1.609 1.00 9.36 ? 6 DA A C8 1
ATOM 113 N N7 . DA A 1 6 ? -9.628 12.738 1.604 1.00 13.40 ? 6 DA A N7 1
ATOM 114 C C5 . DA A 1 6 ? -11.023 12.788 1.561 1.00 11.85 ? 6 DA A C5 1
ATOM 115 C C6 . DA A 1 6 ? -11.931 13.890 1.509 1.00 5.03 ? 6 DA A C6 1
ATOM 116 N N6 . DA A 1 6 ? -11.541 15.145 1.487 1.00 8.68 ? 6 DA A N6 1
ATOM 117 N N1 . DA A 1 6 ? -13.237 13.556 1.461 1.00 7.20 ? 6 DA A N1 1
ATOM 118 C C2 . DA A 1 6 ? -13.668 12.270 1.487 1.00 5.85 ? 6 DA A C2 1
ATOM 119 N N3 . DA A 1 6 ? -12.864 11.200 1.509 1.00 8.95 ? 6 DA A N3 1
ATOM 120 C C4 . DA A 1 6 ? -11.553 11.522 1.530 1.00 6.41 ? 6 DA A C4 1
HETATM 121 C C1 . DM6 B 2 . ? -12.455 18.476 5.182 1.00 17.38 ? 7 DM6 A C1 1
HETATM 122 C C2 . DM6 B 2 . ? -11.236 19.166 5.198 1.00 14.64 ? 7 DM6 A C2 1
HETATM 123 C C3 . DM6 B 2 . ? -10.062 18.558 5.108 1.00 14.53 ? 7 DM6 A C3 1
HETATM 124 C C4 . DM6 B 2 . ? -9.992 17.168 4.949 1.00 11.39 ? 7 DM6 A C4 1
HETATM 125 C C5 . DM6 B 2 . ? -11.208 14.923 4.817 1.00 10.66 ? 7 DM6 A C5 1
HETATM 126 C C6 . DM6 B 2 . ? -12.508 12.875 4.732 1.00 9.73 ? 7 DM6 A C6 1
HETATM 127 C C7 . DM6 B 2 . ? -13.668 10.642 4.811 1.00 8.58 ? 7 DM6 A C7 1
HETATM 128 C C8 . DM6 B 2 . ? -14.993 10.012 4.483 1.00 8.97 ? 7 DM6 A C8 1
HETATM 129 C C9 . DM6 B 2 . ? -16.170 10.603 5.304 1.00 13.92 ? 7 DM6 A C9 1
HETATM 130 C C10 . DM6 B 2 . ? -16.299 12.096 4.928 1.00 14.10 ? 7 DM6 A C10 1
HETATM 131 C C11 . DM6 B 2 . ? -14.932 14.240 4.907 1.00 6.54 ? 7 DM6 A C11 1
HETATM 132 C C12 . DM6 B 2 . ? -13.713 16.395 5.050 1.00 8.64 ? 7 DM6 A C12 1
HETATM 133 C C13 . DM6 B 2 . ? -17.501 9.899 4.907 1.00 20.10 ? 7 DM6 A C13 1
HETATM 134 C C14 . DM6 B 2 . ? -18.185 9.336 6.161 1.00 27.41 ? 7 DM6 A C14 1
HETATM 135 C C15 . DM6 B 2 . ? -12.402 17.089 5.034 1.00 9.56 ? 7 DM6 A C15 1
HETATM 136 C C16 . DM6 B 2 . ? -11.214 16.414 4.922 1.00 16.97 ? 7 DM6 A C16 1
HETATM 137 C C17 . DM6 B 2 . ? -12.505 14.257 4.848 1.00 10.27 ? 7 DM6 A C17 1
HETATM 138 C C18 . DM6 B 2 . ? -13.705 14.935 4.949 1.00 6.44 ? 7 DM6 A C18 1
HETATM 139 C C19 . DM6 B 2 . ? -14.940 12.811 4.822 1.00 8.83 ? 7 DM6 A C19 1
HETATM 140 C C20 . DM6 B 2 . ? -13.758 12.141 4.764 1.00 5.83 ? 7 DM6 A C20 1
HETATM 141 C C21 . DM6 B 2 . ? -7.591 17.145 5.214 1.00 17.17 ? 7 DM6 A C21 1
HETATM 142 O O4 . DM6 B 2 . ? -8.857 16.470 4.901 1.00 17.09 ? 7 DM6 A O4 1
HETATM 143 O O5 . DM6 B 2 . ? -10.157 14.262 4.705 1.00 12.92 ? 7 DM6 A O5 1
HETATM 144 O O6 . DM6 B 2 . ? -11.387 12.127 4.727 1.00 13.78 ? 7 DM6 A O6 1
HETATM 145 O O7 . DM6 B 2 . ? -13.189 10.250 6.124 1.00 13.46 ? 7 DM6 A O7 1
HETATM 146 O O9 . DM6 B 2 . ? -16.055 10.533 6.727 1.00 10.90 ? 7 DM6 A O9 1
HETATM 147 O O11 . DM6 B 2 . ? -16.128 14.873 4.880 1.00 12.32 ? 7 DM6 A O11 1
HETATM 148 O O12 . DM6 B 2 . ? -14.769 17.036 5.023 1.00 14.41 ? 7 DM6 A O12 1
HETATM 149 O O13 . DM6 B 2 . ? -17.924 10.311 3.822 1.00 20.15 ? 7 DM6 A O13 1
HETATM 150 O O14 . DM6 B 2 . ? -19.009 8.272 5.685 1.00 26.06 ? 7 DM6 A O14 1
HETATM 151 C "C1'" . DM6 B 2 . ? -12.292 9.154 6.071 1.00 14.03 ? 7 DM6 A "C1'" 1
HETATM 152 C "C2'" . DM6 B 2 . ? -11.513 9.224 7.341 1.00 13.76 ? 7 DM6 A "C2'" 1
HETATM 153 C "C3'" . DM6 B 2 . ? -12.410 8.930 8.564 1.00 15.32 ? 7 DM6 A "C3'" 1
HETATM 154 C "C4'" . DM6 B 2 . ? -13.158 7.641 8.363 1.00 23.79 ? 7 DM6 A "C4'" 1
HETATM 155 C "C5'" . DM6 B 2 . ? -13.912 7.661 7.061 1.00 31.43 ? 7 DM6 A "C5'" 1
HETATM 156 C "C6'" . DM6 B 2 . ? -14.663 6.349 6.738 1.00 25.56 ? 7 DM6 A "C6'" 1
HETATM 157 O "O4'" . DM6 B 2 . ? -13.929 7.310 9.490 1.00 27.41 ? 7 DM6 A "O4'" 1
HETATM 158 O "O5'" . DM6 B 2 . ? -13.010 7.907 5.960 1.00 25.60 ? 7 DM6 A "O5'" 1
HETATM 159 N "N3'" . DM6 B 2 . ? -11.502 8.790 9.734 1.00 22.16 ? 7 DM6 A "N3'" 1
HETATM 160 O O . HOH C 3 . ? -19.376 11.777 25.068 1.00 28.52 ? 8 HOH A O 1
HETATM 161 O O . HOH C 3 . ? -8.081 14.615 2.668 1.00 22.44 ? 9 HOH A O 1
HETATM 162 O O . HOH C 3 . ? -10.533 21.093 13.254 1.00 37.25 ? 10 HOH A O 1
HETATM 163 O O . HOH C 3 . ? -5.296 15.758 7.326 1.00 19.79 ? 11 HOH A O 1
HETATM 164 O O . HOH C 3 . ? -14.038 8.625 1.159 1.00 23.57 ? 12 HOH A O 1
HETATM 165 O O . HOH C 3 . ? -7.983 21.236 12.814 1.00 39.09 ? 13 HOH A O 1
HETATM 166 O O . HOH C 3 . ? -7.089 18.706 9.993 1.00 29.69 ? 14 HOH A O 1
HETATM 167 O O . HOH C 3 . ? -16.501 21.730 19.039 1.00 34.11 ? 15 HOH A O 1
HETATM 168 O O . HOH C 3 . ? -17.101 17.342 14.651 1.00 25.42 ? 16 HOH A O 1
HETATM 169 O O . HOH C 3 . ? -11.298 18.897 11.862 1.00 31.00 ? 17 HOH A O 1
HETATM 170 O O . HOH C 3 . ? -12.665 8.910 11.978 1.00 31.06 ? 18 HOH A O 1
HETATM 171 O O . HOH C 3 . ? -8.566 21.850 19.907 1.00 27.32 ? 19 HOH A O 1
HETATM 172 O O . HOH C 3 . ? -19.415 14.733 15.630 1.00 40.81 ? 20 HOH A O 1
HETATM 173 O O . HOH C 3 . ? -16.571 19.286 5.595 1.00 34.79 ? 21 HOH A O 1
HETATM 174 O O . HOH C 3 . ? -9.322 17.011 1.419 1.00 34.53 ? 22 HOH A O 1
HETATM 175 O O . HOH C 3 . ? -10.740 19.791 8.972 1.00 42.82 ? 23 HOH A O 1
HETATM 176 O O . HOH C 3 . ? -19.140 17.874 18.319 1.00 38.90 ? 24 HOH A O 1
HETATM 177 O O . HOH C 3 . ? -9.829 10.463 9.750 1.00 21.30 ? 25 HOH A O 1
HETATM 178 O O . HOH C 3 . ? -20.939 18.846 24.374 1.00 39.68 ? 26 HOH A O 1
HETATM 179 O O . HOH C 3 . ? -21.746 12.413 24.136 1.00 67.73 ? 27 HOH A O 1
HETATM 180 O O . HOH C 3 . ? -3.290 17.143 16.477 1.00 71.46 ? 28 HOH A O 1
HETATM 181 O O . HOH C 3 . ? -13.424 6.739 3.144 1.00 54.10 ? 29 HOH A O 1
HETATM 182 O O . HOH C 3 . ? -18.586 5.671 6.712 1.00 33.35 ? 30 HOH A O 1
HETATM 183 O O . HOH C 3 . ? -15.560 9.272 -0.810 1.00 82.73 ? 31 HOH A O 1
HETATM 184 O O . HOH C 3 . ? -3.124 9.471 6.103 1.00 41.21 ? 32 HOH A O 1
HETATM 185 O O . HOH C 3 . ? -5.248 13.531 3.038 1.00 46.19 ? 33 HOH A O 1
HETATM 186 O O . HOH C 3 . ? -5.764 10.376 0.805 1.00 41.73 ? 34 HOH A O 1
HETATM 187 O O . HOH C 3 . ? -6.383 7.563 7.500 1.00 49.02 ? 35 HOH A O 1
HETATM 188 O O . HOH C 3 . ? -1.995 17.260 13.074 1.00 59.37 ? 36 HOH A O 1
HETATM 189 O O . HOH C 3 . ? -21.850 9.311 22.855 1.00 55.05 ? 37 HOH A O 1
HETATM 190 O O . HOH C 3 . ? -10.244 6.904 14.323 1.00 60.87 ? 38 HOH A O 1
HETATM 191 O O . HOH C 3 . ? -18.874 20.600 20.309 1.00 53.95 ? 39 HOH A O 1
HETATM 192 O O . HOH C 3 . ? -4.102 14.523 5.102 1.00 65.34 ? 40 HOH A O 1
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