data_1D41
#
_entry.id 1D41
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1D41 pdb_00001d41 10.2210/pdb1d41/pdb
RCSB ZDFB24 ? ?
WWPDB D_1000172646 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1992-04-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-07
5 'Structure model' 1 4 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_struct_conn_angle
5 4 'Structure model' struct_conn
6 4 'Structure model' struct_conn_type
7 4 'Structure model' struct_site
8 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
15 4 'Structure model' '_pdbx_struct_conn_angle.value'
16 4 'Structure model' '_struct_conn.conn_type_id'
17 4 'Structure model' '_struct_conn.id'
18 4 'Structure model' '_struct_conn.pdbx_dist_value'
19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
20 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
27 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'
34 4 'Structure model' '_struct_conn_type.id'
35 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
36 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
37 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1D41
_pdbx_database_status.recvd_initial_deposition_date 1991-05-07
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Zhou, G.' 1
'Ho, P.S.' 2
#
_citation.id primary
_citation.title
'Stabilization of Z-DNA by demethylation of thymine bases: 1.3-A single-crystal structure of d(m5CGUAm5CG).'
_citation.journal_abbrev Biochemistry
_citation.journal_volume 29
_citation.page_first 7229
_citation.page_last 7236
_citation.year 1990
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 2207101
_citation.pdbx_database_id_DOI 10.1021/bi00483a010
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Zhou, G.W.' 1 ?
primary 'Ho, P.S.' 2 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3')
;
1823.245 2 ? ? ? ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ?
3 water nat water 18.015 60 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(5CM)(DG)(DU)(DA)(5CM)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGUACG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 5CM n
1 2 DG n
1 3 DU n
1 4 DA n
1 5 5CM n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 5CM 1 1 1 5CM +C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DU 3 3 3 DU U A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 5CM 5 5 5 5CM +C A . n
A 1 6 DG 6 6 6 DG G A . n
B 1 1 5CM 1 7 7 5CM +C B . n
B 1 2 DG 2 8 8 DG G B . n
B 1 3 DU 3 9 9 DU U B . n
B 1 4 DA 4 10 10 DA A B . n
B 1 5 5CM 5 11 11 5CM +C B . n
B 1 6 DG 6 12 12 DG G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG 1 13 13 MG MO5 B .
D 2 MG 1 14 14 MG MO6 B .
E 3 HOH 1 16 16 HOH HOH A .
E 3 HOH 2 17 17 HOH HOH A .
E 3 HOH 3 18 18 HOH HOH A .
E 3 HOH 4 19 19 HOH HOH A .
E 3 HOH 5 20 20 HOH HOH A .
E 3 HOH 6 21 21 HOH HOH A .
E 3 HOH 7 24 24 HOH HOH A .
E 3 HOH 8 26 26 HOH HOH A .
E 3 HOH 9 27 27 HOH HOH A .
E 3 HOH 10 29 29 HOH HOH A .
E 3 HOH 11 33 33 HOH HOH A .
E 3 HOH 12 34 34 HOH HOH A .
E 3 HOH 13 36 36 HOH HOH A .
E 3 HOH 14 37 37 HOH HOH A .
E 3 HOH 15 38 38 HOH HOH A .
E 3 HOH 16 39 39 HOH HOH A .
E 3 HOH 17 40 40 HOH HOH A .
E 3 HOH 18 41 41 HOH HOH A .
E 3 HOH 19 44 44 HOH HOH A .
E 3 HOH 20 46 46 HOH HOH A .
E 3 HOH 21 48 48 HOH HOH A .
E 3 HOH 22 49 49 HOH HOH A .
E 3 HOH 23 51 51 HOH HOH A .
E 3 HOH 24 52 52 HOH HOH A .
E 3 HOH 25 53 53 HOH HOH A .
E 3 HOH 26 54 54 HOH HOH A .
E 3 HOH 27 55 55 HOH HOH A .
E 3 HOH 28 58 58 HOH HOH A .
E 3 HOH 29 63 63 HOH HOH A .
E 3 HOH 30 69 14 HOH MO6 A .
E 3 HOH 31 71 14 HOH MO6 A .
E 3 HOH 32 72 14 HOH MO6 A .
E 3 HOH 33 73 14 HOH MO6 A .
E 3 HOH 34 74 14 HOH MO6 A .
F 3 HOH 1 15 15 HOH HOH B .
F 3 HOH 2 22 22 HOH HOH B .
F 3 HOH 3 23 23 HOH HOH B .
F 3 HOH 4 25 25 HOH HOH B .
F 3 HOH 5 28 28 HOH HOH B .
F 3 HOH 6 30 30 HOH HOH B .
F 3 HOH 7 31 31 HOH HOH B .
F 3 HOH 8 32 32 HOH HOH B .
F 3 HOH 9 35 35 HOH HOH B .
F 3 HOH 10 42 42 HOH HOH B .
F 3 HOH 11 43 43 HOH HOH B .
F 3 HOH 12 45 45 HOH HOH B .
F 3 HOH 13 47 47 HOH HOH B .
F 3 HOH 14 50 50 HOH HOH B .
F 3 HOH 15 56 56 HOH HOH B .
F 3 HOH 16 57 57 HOH HOH B .
F 3 HOH 17 59 59 HOH HOH B .
F 3 HOH 18 60 60 HOH HOH B .
F 3 HOH 19 61 61 HOH HOH B .
F 3 HOH 20 62 62 HOH HOH B .
F 3 HOH 21 64 13 HOH MO5 B .
F 3 HOH 22 65 13 HOH MO5 B .
F 3 HOH 23 66 13 HOH MO5 B .
F 3 HOH 24 67 13 HOH MO5 B .
F 3 HOH 25 68 13 HOH MO5 B .
F 3 HOH 26 70 14 HOH MO6 B .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1D41
_cell.length_a 17.820
_cell.length_b 30.440
_cell.length_c 44.520
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1D41
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
#
_exptl.entry_id 1D41
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.66
_exptl_crystal.density_percent_sol 25.71
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 MGCL2 ? ? ?
1 5 2 WATER ? ? ?
1 6 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details 'ROOM TEMPERATURE'
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type RIGAKU
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source ?
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1D41
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F 2.000
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.300
_reflns.number_obs 2870
_reflns.number_all 3869
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1D41
_refine.ls_number_reflns_obs 2870
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.300
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.208
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model
'ZDFB06 IN WHICH THE METHYL GROUPS OF THE THYMINE BASES WERE REMOVED FROM THE C5 POSITIONS.'
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 238
_refine_hist.pdbx_number_atoms_ligand 17
_refine_hist.number_atoms_solvent 49
_refine_hist.number_atoms_total 304
_refine_hist.d_res_high 1.300
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1D41
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1D41
_struct.title
'STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1D41
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Z-DNA, DOUBLE HELIX, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
E N N 3 ?
F N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1D41
_struct_ref.pdbx_db_accession 1D41
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1D41 A 1 ? 6 ? 1D41 1 ? 6 ? 1 6
2 1 1D41 B 1 ? 6 ? 1D41 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A 5CM 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A 5CM 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.643 ? ?
covale2 covale both ? A DA 4 "O3'" ? ? ? 1_555 A 5CM 5 P ? ? A DA 4 A 5CM 5 1_555 ? ? ? ? ? ? ? 1.615 ? ?
covale3 covale both ? A 5CM 5 "O3'" ? ? ? 1_555 A DG 6 P ? ? A 5CM 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.616 ? ?
covale4 covale both ? B 5CM 1 "O3'" ? ? ? 1_555 B DG 2 P ? ? B 5CM 7 B DG 8 1_555 ? ? ? ? ? ? ? 1.523 ? ?
covale5 covale both ? B DA 4 "O3'" ? ? ? 1_555 B 5CM 5 P ? ? B DA 10 B 5CM 11 1_555 ? ? ? ? ? ? ? 1.626 ? ?
covale6 covale both ? B 5CM 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5CM 11 B DG 12 1_555 ? ? ? ? ? ? ? 1.604 ? ?
metalc1 metalc ? ? E HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 69 B MG 14 1_555 ? ? ? ? ? ? ? 2.124 ? ?
metalc2 metalc ? ? E HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 71 B MG 14 1_555 ? ? ? ? ? ? ? 2.076 ? ?
metalc3 metalc ? ? E HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 72 B MG 14 1_555 ? ? ? ? ? ? ? 2.050 ? ?
metalc4 metalc ? ? E HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 73 B MG 14 1_555 ? ? ? ? ? ? ? 2.189 ? ?
metalc5 metalc ? ? E HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 74 B MG 14 1_555 ? ? ? ? ? ? ? 2.079 ? ?
metalc6 metalc ? ? B DU 3 OP2 ? ? ? 1_555 C MG . MG ? ? B DU 9 B MG 13 1_555 ? ? ? ? ? ? ? 1.968 ? ?
metalc7 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 13 B HOH 64 1_555 ? ? ? ? ? ? ? 2.051 ? ?
metalc8 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 13 B HOH 65 1_555 ? ? ? ? ? ? ? 2.090 ? ?
metalc9 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 13 B HOH 66 1_555 ? ? ? ? ? ? ? 2.240 ? ?
metalc10 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 13 B HOH 67 1_555 ? ? ? ? ? ? ? 2.024 ? ?
metalc11 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 13 B HOH 68 1_555 ? ? ? ? ? ? ? 2.180 ? ?
metalc12 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 14 B HOH 70 1_555 ? ? ? ? ? ? ? 2.171 ? ?
hydrog1 hydrog ? ? A 5CM 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A 5CM 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A 5CM 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B 5CM 5 N3 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B 5CM 5 O2 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B 5CM 5 N4 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DU 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DU 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DU 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DU 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DU 3 N3 ? ? A DA 4 B DU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DU 3 O4 ? ? A DA 4 B DU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A 5CM 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A 5CM 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A 5CM 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B 5CM 1 N3 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B 5CM 1 O2 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B 5CM 1 N4 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? E HOH . ? A HOH 69 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 71 ? 1_555 94.3 ?
2 O ? E HOH . ? A HOH 69 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 72 ? 1_555 85.9 ?
3 O ? E HOH . ? A HOH 71 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 72 ? 1_555 177.3 ?
4 O ? E HOH . ? A HOH 69 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 73 ? 1_555 85.9 ?
5 O ? E HOH . ? A HOH 71 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 73 ? 1_555 82.6 ?
6 O ? E HOH . ? A HOH 72 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 73 ? 1_555 94.7 ?
7 O ? E HOH . ? A HOH 69 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 74 ? 1_555 92.3 ?
8 O ? E HOH . ? A HOH 71 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 74 ? 1_555 83.9 ?
9 O ? E HOH . ? A HOH 72 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 74 ? 1_555 98.8 ?
10 O ? E HOH . ? A HOH 73 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? E HOH . ? A HOH 74 ? 1_555 166.2 ?
11 O ? E HOH . ? A HOH 69 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? F HOH . ? B HOH 70 ? 1_555 175.0 ?
12 O ? E HOH . ? A HOH 71 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? F HOH . ? B HOH 70 ? 1_555 89.5 ?
13 O ? E HOH . ? A HOH 72 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? F HOH . ? B HOH 70 ? 1_555 90.2 ?
14 O ? E HOH . ? A HOH 73 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? F HOH . ? B HOH 70 ? 1_555 91.3 ?
15 O ? E HOH . ? A HOH 74 ? 1_555 MG ? D MG . ? B MG 14 ? 1_555 O ? F HOH . ? B HOH 70 ? 1_555 91.3 ?
16 OP2 ? B DU 3 ? B DU 9 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 64 ? 1_555 91.5 ?
17 OP2 ? B DU 3 ? B DU 9 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 65 ? 1_555 89.0 ?
18 O ? F HOH . ? B HOH 64 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 65 ? 1_555 172.7 ?
19 OP2 ? B DU 3 ? B DU 9 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 66 ? 1_555 91.3 ?
20 O ? F HOH . ? B HOH 64 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 66 ? 1_555 89.9 ?
21 O ? F HOH . ? B HOH 65 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 66 ? 1_555 82.9 ?
22 OP2 ? B DU 3 ? B DU 9 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 67 ? 1_555 96.8 ?
23 O ? F HOH . ? B HOH 64 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 67 ? 1_555 105.1 ?
24 O ? F HOH . ? B HOH 65 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 67 ? 1_555 82.0 ?
25 O ? F HOH . ? B HOH 66 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 67 ? 1_555 162.6 ?
26 OP2 ? B DU 3 ? B DU 9 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 68 ? 1_555 172.0 ?
27 O ? F HOH . ? B HOH 64 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 68 ? 1_555 96.0 ?
28 O ? F HOH . ? B HOH 65 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 68 ? 1_555 83.2 ?
29 O ? F HOH . ? B HOH 66 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 68 ? 1_555 86.0 ?
30 O ? F HOH . ? B HOH 67 ? 1_555 MG ? C MG . ? B MG 13 ? 1_555 O ? F HOH . ? B HOH 68 ? 1_555 83.9 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software B MG 13 ? 6 'BINDING SITE FOR RESIDUE MG B 13'
AC2 Software B MG 14 ? 6 'BINDING SITE FOR RESIDUE MG B 14'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 DU B 3 ? DU B 9 . ? 1_555 ?
2 AC1 6 HOH F . ? HOH B 64 . ? 1_555 ?
3 AC1 6 HOH F . ? HOH B 65 . ? 1_555 ?
4 AC1 6 HOH F . ? HOH B 66 . ? 1_555 ?
5 AC1 6 HOH F . ? HOH B 67 . ? 1_555 ?
6 AC1 6 HOH F . ? HOH B 68 . ? 1_555 ?
7 AC2 6 HOH E . ? HOH A 69 . ? 1_555 ?
8 AC2 6 HOH E . ? HOH A 71 . ? 1_555 ?
9 AC2 6 HOH E . ? HOH A 72 . ? 1_555 ?
10 AC2 6 HOH E . ? HOH A 73 . ? 1_555 ?
11 AC2 6 HOH E . ? HOH A 74 . ? 1_555 ?
12 AC2 6 HOH F . ? HOH B 70 . ? 1_555 ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O A HOH 19 ? ? O A HOH 39 ? ? 1.69
2 1 "O3'" A DG 2 ? ? O A HOH 20 ? ? 1.92
3 1 "C5'" B 5CM 7 ? ? O B HOH 30 ? ? 2.16
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.636 1.529 0.107 0.010 N
2 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.454 1.516 -0.062 0.008 N
3 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.646 1.519 0.127 0.010 N
4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.502 1.420 0.082 0.011 N
5 1 "C1'" A DG 2 ? ? N9 A DG 2 ? ? 1.326 1.468 -0.142 0.014 N
6 1 N1 A DG 2 ? ? C2 A DG 2 ? ? 1.307 1.373 -0.066 0.008 N
7 1 C2 A DG 2 ? ? N3 A DG 2 ? ? 1.275 1.323 -0.048 0.008 N
8 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.356 1.305 0.051 0.006 N
9 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.251 1.341 -0.090 0.010 N
10 1 "O3'" A DG 2 ? ? P A DU 3 ? ? 1.696 1.607 0.089 0.012 Y
11 1 "C2'" A DU 3 ? ? "C1'" A DU 3 ? ? 1.663 1.519 0.144 0.010 N
12 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? 1.556 1.420 0.136 0.011 N
13 1 C4 A DA 4 ? ? C5 A DA 4 ? ? 1.318 1.383 -0.065 0.007 N
14 1 N7 A DA 4 ? ? C8 A DA 4 ? ? 1.354 1.311 0.043 0.007 N
15 1 C8 A DA 4 ? ? N9 A DA 4 ? ? 1.302 1.373 -0.071 0.008 N
16 1 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.412 1.335 0.077 0.008 N
17 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.676 1.593 0.083 0.010 N
18 1 "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.594 1.512 0.082 0.007 N
19 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.413 1.521 -0.108 0.010 N
20 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 1.439 1.516 -0.077 0.008 N
21 1 N1 A DG 6 ? ? C2 A DG 6 ? ? 1.301 1.373 -0.072 0.008 N
22 1 C2 A DG 6 ? ? N3 A DG 6 ? ? 1.376 1.323 0.053 0.008 N
23 1 C4 A DG 6 ? ? C5 A DG 6 ? ? 1.316 1.379 -0.063 0.007 N
24 1 C5 A DG 6 ? ? N7 A DG 6 ? ? 1.444 1.388 0.056 0.006 N
25 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.306 1.374 -0.068 0.007 N
26 1 "O3'" B 5CM 7 ? ? P B DG 8 ? ? 1.523 1.607 -0.084 0.012 Y
27 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 1.663 1.529 0.134 0.010 N
28 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 1.447 1.516 -0.069 0.008 N
29 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.409 1.518 -0.109 0.010 N
30 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.503 1.420 0.083 0.011 N
31 1 N7 B DG 8 ? ? C8 B DG 8 ? ? 1.385 1.305 0.080 0.006 N
32 1 C8 B DG 8 ? ? N9 B DG 8 ? ? 1.329 1.374 -0.045 0.007 N
33 1 N9 B DG 8 ? ? C4 B DG 8 ? ? 1.456 1.375 0.081 0.008 N
34 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.265 1.341 -0.076 0.010 N
35 1 "C5'" B DU 9 ? ? "C4'" B DU 9 ? ? 1.560 1.512 0.048 0.007 N
36 1 "C2'" B DU 9 ? ? "C1'" B DU 9 ? ? 1.605 1.519 0.086 0.010 N
37 1 "O3'" B DU 9 ? ? "C3'" B DU 9 ? ? 1.358 1.419 -0.061 0.006 N
38 1 "C1'" B DU 9 ? ? N1 B DU 9 ? ? 1.607 1.488 0.119 0.013 N
39 1 N1 B DU 9 ? ? C2 B DU 9 ? ? 1.318 1.381 -0.063 0.009 N
40 1 P B DA 10 ? ? OP2 B DA 10 ? ? 1.372 1.485 -0.113 0.017 N
41 1 P B DA 10 ? ? "O5'" B DA 10 ? ? 1.681 1.593 0.088 0.010 N
42 1 "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? 1.429 1.509 -0.080 0.011 N
43 1 "C1'" B DA 10 ? ? N9 B DA 10 ? ? 1.379 1.468 -0.089 0.014 N
44 1 C2 B DA 10 ? ? N3 B DA 10 ? ? 1.389 1.331 0.058 0.009 N
45 1 C6 B DA 10 ? ? N6 B DA 10 ? ? 1.384 1.335 0.049 0.008 N
46 1 P B DG 12 ? ? "O5'" B DG 12 ? ? 1.675 1.593 0.082 0.010 N
47 1 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 1.466 1.516 -0.050 0.008 N
48 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.344 1.446 -0.102 0.010 N
49 1 "O3'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.320 1.419 -0.099 0.006 N
50 1 N1 B DG 12 ? ? C2 B DG 12 ? ? 1.309 1.373 -0.064 0.008 N
51 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.355 1.305 0.050 0.006 N
52 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.327 1.374 -0.047 0.007 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 136.88 119.60 17.28 1.50 N
2 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 90.48 105.70 -15.22 0.90 N
3 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 119.28 110.70 8.58 1.20 N
4 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 109.24 103.10 6.14 0.90 N
5 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 130.67 123.90 6.77 0.60 N
6 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 114.70 110.80 3.90 0.40 N
7 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 100.53 104.30 -3.77 0.50 N
8 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 111.79 119.90 -8.11 0.70 N
9 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.97 128.60 -4.63 0.60 N
10 1 "O3'" A DG 2 ? ? P A DU 3 ? ? OP1 A DU 3 ? ? 91.46 105.20 -13.74 2.20 Y
11 1 "O5'" A DU 3 ? ? "C5'" A DU 3 ? ? "C4'" A DU 3 ? ? 91.88 109.40 -17.52 0.80 N
12 1 "O4'" A DU 3 ? ? "C4'" A DU 3 ? ? "C3'" A DU 3 ? ? 101.72 104.50 -2.78 0.40 N
13 1 "C4'" A DU 3 ? ? "C3'" A DU 3 ? ? "C2'" A DU 3 ? ? 110.35 103.10 7.25 0.90 N
14 1 "C3'" A DU 3 ? ? "C2'" A DU 3 ? ? "C1'" A DU 3 ? ? 91.79 102.40 -10.61 0.80 N
15 1 "O4'" A DU 3 ? ? "C1'" A DU 3 ? ? N1 A DU 3 ? ? 102.55 108.00 -5.45 0.70 N
16 1 "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 102.94 109.40 -6.46 0.80 N
17 1 "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? 94.23 109.70 -15.47 2.50 N
18 1 "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? "C1'" A DA 4 ? ? 109.90 102.50 7.40 1.20 N
19 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? "C2'" A DA 4 ? ? 100.77 105.90 -5.13 0.80 N
20 1 C5 A DA 4 ? ? N7 A DA 4 ? ? C8 A DA 4 ? ? 100.48 103.90 -3.42 0.50 N
21 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 98.14 105.70 -7.56 0.90 N
22 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 119.25 110.70 8.55 1.20 N
23 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 96.17 109.40 -13.23 0.80 N
24 1 P A DG 6 ? ? "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? 108.03 120.90 -12.87 1.60 N
25 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 115.35 106.00 9.35 0.60 N
26 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 97.70 102.20 -4.50 0.70 N
27 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 110.98 102.50 8.48 1.20 N
28 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 116.03 125.10 -9.07 0.60 N
29 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 130.87 123.90 6.97 0.60 N
30 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 106.83 111.90 -5.07 0.50 N
31 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 116.46 111.50 4.96 0.50 N
32 1 C8 A DG 6 ? ? N9 A DG 6 ? ? C4 A DG 6 ? ? 109.82 106.40 3.42 0.40 N
33 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 111.08 119.90 -8.82 0.70 N
34 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 114.98 119.90 -4.92 0.60 N
35 1 "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 98.77 109.40 -10.63 0.80 N
36 1 "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 101.16 114.10 -12.94 1.80 N
37 1 "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? "O4'" B DG 8 ? ? 117.14 109.80 7.34 1.10 N
38 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 114.40 106.80 7.60 0.50 N
39 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 117.93 125.10 -7.17 0.60 N
40 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N3 B DG 8 ? ? 128.53 123.90 4.63 0.60 N
41 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 117.71 111.50 6.21 0.50 N
42 1 C4 B DG 8 ? ? C5 B DG 8 ? ? N7 B DG 8 ? ? 115.01 110.80 4.21 0.40 N
43 1 N9 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 101.70 105.40 -3.70 0.40 N
44 1 N3 B DG 8 ? ? C4 B DG 8 ? ? N9 B DG 8 ? ? 130.94 126.00 4.94 0.60 N
45 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 111.78 119.90 -8.12 0.70 N
46 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 123.41 128.60 -5.19 0.60 N
47 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DU 9 ? ? 129.67 119.70 9.97 1.20 Y
48 1 OP1 B DU 9 ? ? P B DU 9 ? ? OP2 B DU 9 ? ? 105.24 119.60 -14.36 1.50 N
49 1 "O5'" B DU 9 ? ? P B DU 9 ? ? OP1 B DU 9 ? ? 117.97 110.70 7.27 1.20 N
50 1 "O5'" B DU 9 ? ? "C5'" B DU 9 ? ? "C4'" B DU 9 ? ? 104.36 109.40 -5.04 0.80 N
51 1 "O4'" B DU 9 ? ? "C4'" B DU 9 ? ? "C3'" B DU 9 ? ? 101.12 104.50 -3.38 0.40 N
52 1 "C5'" B DU 9 ? ? "C4'" B DU 9 ? ? "C3'" B DU 9 ? ? 124.46 115.70 8.76 1.20 N
53 1 "C3'" B DU 9 ? ? "C2'" B DU 9 ? ? "C1'" B DU 9 ? ? 93.73 102.40 -8.67 0.80 N
54 1 "O4'" B DU 9 ? ? "C1'" B DU 9 ? ? N1 B DU 9 ? ? 102.26 108.00 -5.74 0.70 N
55 1 C6 B DU 9 ? ? N1 B DU 9 ? ? C2 B DU 9 ? ? 125.84 121.00 4.84 0.60 N
56 1 C5 B DU 9 ? ? C6 B DU 9 ? ? N1 B DU 9 ? ? 116.26 122.70 -6.44 0.50 N
57 1 N3 B DU 9 ? ? C4 B DU 9 ? ? O4 B DU 9 ? ? 114.22 119.40 -5.18 0.70 N
58 1 "C3'" B DU 9 ? ? "O3'" B DU 9 ? ? P B DA 10 ? ? 128.11 119.70 8.41 1.20 Y
59 1 "O5'" B DA 10 ? ? P B DA 10 ? ? OP2 B DA 10 ? ? 98.50 105.70 -7.20 0.90 N
60 1 "O5'" B DA 10 ? ? "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? 104.37 109.40 -5.03 0.80 N
61 1 "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? "C3'" B DA 10 ? ? 100.51 104.50 -3.99 0.40 N
62 1 "C1'" B DA 10 ? ? "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 119.45 110.30 9.15 0.70 N
63 1 "C4'" B DA 10 ? ? "C3'" B DA 10 ? ? "C2'" B DA 10 ? ? 111.42 103.10 8.32 0.90 N
64 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? "C2'" B DA 10 ? ? 101.05 105.90 -4.85 0.80 N
65 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 114.74 108.30 6.44 0.30 N
66 1 N1 B DA 10 ? ? C2 B DA 10 ? ? N3 B DA 10 ? ? 125.62 129.30 -3.68 0.50 N
67 1 N9 B DA 10 ? ? C4 B DA 10 ? ? C5 B DA 10 ? ? 102.66 105.80 -3.14 0.40 N
68 1 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 123.38 118.60 4.78 0.60 N
69 1 C5 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 118.60 123.70 -5.10 0.80 N
70 1 "C3'" B DA 10 ? ? "O3'" B DA 10 ? ? P B 5CM 11 ? ? 128.41 119.70 8.71 1.20 Y
71 1 "O5'" B DG 12 ? ? P B DG 12 ? ? OP1 B DG 12 ? ? 122.08 110.70 11.38 1.20 N
72 1 "O5'" B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 89.11 105.70 -16.59 0.90 N
73 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 94.67 104.50 -9.83 0.40 N
74 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 123.40 115.70 7.70 1.20 N
75 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 112.64 103.10 9.54 0.90 N
76 1 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 96.80 102.40 -5.60 0.80 N
77 1 C6 B DG 12 ? ? N1 B DG 12 ? ? C2 B DG 12 ? ? 112.63 125.10 -12.47 0.60 N
78 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N3 B DG 12 ? ? 136.92 123.90 13.02 0.60 N
79 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 124.38 128.60 -4.22 0.50 N
80 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 117.23 111.50 5.73 0.50 N
81 1 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 109.25 106.40 2.85 0.40 N
82 1 N3 B DG 12 ? ? C4 B DG 12 ? ? N9 B DG 12 ? ? 132.16 126.00 6.16 0.60 N
83 1 N3 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 103.37 119.90 -16.53 0.70 N
84 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 121.29 128.60 -7.31 0.60 N
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A 5CM 1 A 5CM 1 ? DC ?
2 A 5CM 5 A 5CM 5 ? DC ?
3 B 5CM 1 B 5CM 7 ? DC ?
4 B 5CM 5 B 5CM 11 ? DC ?
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL IONS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL IONS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
5CM N1 N N N 1
5CM C2 C N N 2
5CM N3 N N N 3
5CM C4 C N N 4
5CM C5 C N N 5
5CM C5A C N N 6
5CM C6 C N N 7
5CM O2 O N N 8
5CM N4 N N N 9
5CM "C1'" C N R 10
5CM "C2'" C N N 11
5CM "C3'" C N S 12
5CM "C4'" C N R 13
5CM "O4'" O N N 14
5CM "O3'" O N N 15
5CM "C5'" C N N 16
5CM "O5'" O N N 17
5CM P P N N 18
5CM OP1 O N N 19
5CM OP2 O N N 20
5CM OP3 O N N 21
5CM H5A1 H N N 22
5CM H5A2 H N N 23
5CM H5A3 H N N 24
5CM H6 H N N 25
5CM HN41 H N N 26
5CM HN42 H N N 27
5CM "H1'" H N N 28
5CM "H2'" H N N 29
5CM "H2''" H N N 30
5CM "H3'" H N N 31
5CM "H4'" H N N 32
5CM "HO3'" H N N 33
5CM "H5'" H N N 34
5CM "H5''" H N N 35
5CM HOP2 H N N 36
5CM HOP3 H N N 37
DA OP3 O N N 38
DA P P N N 39
DA OP1 O N N 40
DA OP2 O N N 41
DA "O5'" O N N 42
DA "C5'" C N N 43
DA "C4'" C N R 44
DA "O4'" O N N 45
DA "C3'" C N S 46
DA "O3'" O N N 47
DA "C2'" C N N 48
DA "C1'" C N R 49
DA N9 N Y N 50
DA C8 C Y N 51
DA N7 N Y N 52
DA C5 C Y N 53
DA C6 C Y N 54
DA N6 N N N 55
DA N1 N Y N 56
DA C2 C Y N 57
DA N3 N Y N 58
DA C4 C Y N 59
DA HOP3 H N N 60
DA HOP2 H N N 61
DA "H5'" H N N 62
DA "H5''" H N N 63
DA "H4'" H N N 64
DA "H3'" H N N 65
DA "HO3'" H N N 66
DA "H2'" H N N 67
DA "H2''" H N N 68
DA "H1'" H N N 69
DA H8 H N N 70
DA H61 H N N 71
DA H62 H N N 72
DA H2 H N N 73
DG OP3 O N N 74
DG P P N N 75
DG OP1 O N N 76
DG OP2 O N N 77
DG "O5'" O N N 78
DG "C5'" C N N 79
DG "C4'" C N R 80
DG "O4'" O N N 81
DG "C3'" C N S 82
DG "O3'" O N N 83
DG "C2'" C N N 84
DG "C1'" C N R 85
DG N9 N Y N 86
DG C8 C Y N 87
DG N7 N Y N 88
DG C5 C Y N 89
DG C6 C N N 90
DG O6 O N N 91
DG N1 N N N 92
DG C2 C N N 93
DG N2 N N N 94
DG N3 N N N 95
DG C4 C Y N 96
DG HOP3 H N N 97
DG HOP2 H N N 98
DG "H5'" H N N 99
DG "H5''" H N N 100
DG "H4'" H N N 101
DG "H3'" H N N 102
DG "HO3'" H N N 103
DG "H2'" H N N 104
DG "H2''" H N N 105
DG "H1'" H N N 106
DG H8 H N N 107
DG H1 H N N 108
DG H21 H N N 109
DG H22 H N N 110
DU OP3 O N N 111
DU P P N N 112
DU OP1 O N N 113
DU OP2 O N N 114
DU "O5'" O N N 115
DU "C5'" C N N 116
DU "C4'" C N R 117
DU "O4'" O N N 118
DU "C3'" C N S 119
DU "O3'" O N N 120
DU "C2'" C N N 121
DU "C1'" C N R 122
DU N1 N N N 123
DU C2 C N N 124
DU O2 O N N 125
DU N3 N N N 126
DU C4 C N N 127
DU O4 O N N 128
DU C5 C N N 129
DU C6 C N N 130
DU HOP3 H N N 131
DU HOP2 H N N 132
DU "H5'" H N N 133
DU "H5''" H N N 134
DU "H4'" H N N 135
DU "H3'" H N N 136
DU "HO3'" H N N 137
DU "H2'" H N N 138
DU "H2''" H N N 139
DU "H1'" H N N 140
DU H3 H N N 141
DU H5 H N N 142
DU H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
MG MG MG N N 147
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CM N1 C2 sing N N 1
5CM N1 C6 sing N N 2
5CM N1 "C1'" sing N N 3
5CM C2 N3 sing N N 4
5CM C2 O2 doub N N 5
5CM N3 C4 doub N N 6
5CM C4 C5 sing N N 7
5CM C4 N4 sing N N 8
5CM C5 C5A sing N N 9
5CM C5 C6 doub N N 10
5CM C5A H5A1 sing N N 11
5CM C5A H5A2 sing N N 12
5CM C5A H5A3 sing N N 13
5CM C6 H6 sing N N 14
5CM N4 HN41 sing N N 15
5CM N4 HN42 sing N N 16
5CM "C1'" "C2'" sing N N 17
5CM "C1'" "O4'" sing N N 18
5CM "C1'" "H1'" sing N N 19
5CM "C2'" "C3'" sing N N 20
5CM "C2'" "H2'" sing N N 21
5CM "C2'" "H2''" sing N N 22
5CM "C3'" "C4'" sing N N 23
5CM "C3'" "O3'" sing N N 24
5CM "C3'" "H3'" sing N N 25
5CM "C4'" "O4'" sing N N 26
5CM "C4'" "C5'" sing N N 27
5CM "C4'" "H4'" sing N N 28
5CM "O3'" "HO3'" sing N N 29
5CM "C5'" "O5'" sing N N 30
5CM "C5'" "H5'" sing N N 31
5CM "C5'" "H5''" sing N N 32
5CM "O5'" P sing N N 33
5CM P OP1 doub N N 34
5CM P OP2 sing N N 35
5CM P OP3 sing N N 36
5CM OP2 HOP2 sing N N 37
5CM OP3 HOP3 sing N N 38
DA OP3 P sing N N 39
DA OP3 HOP3 sing N N 40
DA P OP1 doub N N 41
DA P OP2 sing N N 42
DA P "O5'" sing N N 43
DA OP2 HOP2 sing N N 44
DA "O5'" "C5'" sing N N 45
DA "C5'" "C4'" sing N N 46
DA "C5'" "H5'" sing N N 47
DA "C5'" "H5''" sing N N 48
DA "C4'" "O4'" sing N N 49
DA "C4'" "C3'" sing N N 50
DA "C4'" "H4'" sing N N 51
DA "O4'" "C1'" sing N N 52
DA "C3'" "O3'" sing N N 53
DA "C3'" "C2'" sing N N 54
DA "C3'" "H3'" sing N N 55
DA "O3'" "HO3'" sing N N 56
DA "C2'" "C1'" sing N N 57
DA "C2'" "H2'" sing N N 58
DA "C2'" "H2''" sing N N 59
DA "C1'" N9 sing N N 60
DA "C1'" "H1'" sing N N 61
DA N9 C8 sing Y N 62
DA N9 C4 sing Y N 63
DA C8 N7 doub Y N 64
DA C8 H8 sing N N 65
DA N7 C5 sing Y N 66
DA C5 C6 sing Y N 67
DA C5 C4 doub Y N 68
DA C6 N6 sing N N 69
DA C6 N1 doub Y N 70
DA N6 H61 sing N N 71
DA N6 H62 sing N N 72
DA N1 C2 sing Y N 73
DA C2 N3 doub Y N 74
DA C2 H2 sing N N 75
DA N3 C4 sing Y N 76
DG OP3 P sing N N 77
DG OP3 HOP3 sing N N 78
DG P OP1 doub N N 79
DG P OP2 sing N N 80
DG P "O5'" sing N N 81
DG OP2 HOP2 sing N N 82
DG "O5'" "C5'" sing N N 83
DG "C5'" "C4'" sing N N 84
DG "C5'" "H5'" sing N N 85
DG "C5'" "H5''" sing N N 86
DG "C4'" "O4'" sing N N 87
DG "C4'" "C3'" sing N N 88
DG "C4'" "H4'" sing N N 89
DG "O4'" "C1'" sing N N 90
DG "C3'" "O3'" sing N N 91
DG "C3'" "C2'" sing N N 92
DG "C3'" "H3'" sing N N 93
DG "O3'" "HO3'" sing N N 94
DG "C2'" "C1'" sing N N 95
DG "C2'" "H2'" sing N N 96
DG "C2'" "H2''" sing N N 97
DG "C1'" N9 sing N N 98
DG "C1'" "H1'" sing N N 99
DG N9 C8 sing Y N 100
DG N9 C4 sing Y N 101
DG C8 N7 doub Y N 102
DG C8 H8 sing N N 103
DG N7 C5 sing Y N 104
DG C5 C6 sing N N 105
DG C5 C4 doub Y N 106
DG C6 O6 doub N N 107
DG C6 N1 sing N N 108
DG N1 C2 sing N N 109
DG N1 H1 sing N N 110
DG C2 N2 sing N N 111
DG C2 N3 doub N N 112
DG N2 H21 sing N N 113
DG N2 H22 sing N N 114
DG N3 C4 sing N N 115
DU OP3 P sing N N 116
DU OP3 HOP3 sing N N 117
DU P OP1 doub N N 118
DU P OP2 sing N N 119
DU P "O5'" sing N N 120
DU OP2 HOP2 sing N N 121
DU "O5'" "C5'" sing N N 122
DU "C5'" "C4'" sing N N 123
DU "C5'" "H5'" sing N N 124
DU "C5'" "H5''" sing N N 125
DU "C4'" "O4'" sing N N 126
DU "C4'" "C3'" sing N N 127
DU "C4'" "H4'" sing N N 128
DU "O4'" "C1'" sing N N 129
DU "C3'" "O3'" sing N N 130
DU "C3'" "C2'" sing N N 131
DU "C3'" "H3'" sing N N 132
DU "O3'" "HO3'" sing N N 133
DU "C2'" "C1'" sing N N 134
DU "C2'" "H2'" sing N N 135
DU "C2'" "H2''" sing N N 136
DU "C1'" N1 sing N N 137
DU "C1'" "H1'" sing N N 138
DU N1 C2 sing N N 139
DU N1 C6 sing N N 140
DU C2 O2 doub N N 141
DU C2 N3 sing N N 142
DU N3 C4 sing N N 143
DU N3 H3 sing N N 144
DU C4 O4 doub N N 145
DU C4 C5 sing N N 146
DU C5 C6 doub N N 147
DU C5 H5 sing N N 148
DU C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
_ndb_struct_conf_na.entry_id 1D41
_ndb_struct_conf_na.feature 'z-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A 5CM 1 1_555 B DG 6 1_555 -0.373 -0.194 -0.057 9.603 0.654 1.140 1 A_5CM1:DG12_B A 1 ? B 12 ? 19 1
1 A DG 2 1_555 B 5CM 5 1_555 0.233 -0.182 0.148 -8.635 5.542 3.792 2 A_DG2:5CM11_B A 2 ? B 11 ? 19 1
1 A DU 3 1_555 B DA 4 1_555 -0.220 -0.180 0.303 6.575 -7.867 -1.049 3 A_DU3:DA10_B A 3 ? B 10 ? 20 1
1 A DA 4 1_555 B DU 3 1_555 0.142 -0.057 -0.014 -6.124 -3.211 2.754 4 A_DA4:DU9_B A 4 ? B 9 ? 20 1
1 A 5CM 5 1_555 B DG 2 1_555 -0.350 -0.173 0.026 -0.009 -0.801 -0.128 5 A_5CM5:DG8_B A 5 ? B 8 ? 19 1
1 A DG 6 1_555 B 5CM 1 1_555 0.226 -0.127 0.056 -3.364 -2.506 -0.735 6 A_DG6:5CM7_B A 6 ? B 7 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A 5CM 1 1_555 B DG 6 1_555 A DG 2 1_555 B 5CM 5 1_555 0.188 5.702 4.068 1.678 0.085 -11.575 -28.124 3.752 3.958 -0.418
8.261 -11.696 1 AA_5CM1DG2:5CM11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A DG 2 1_555 B 5CM 5 1_555 A DU 3 1_555 B DA 4 1_555 -0.174 -0.627 3.227 -1.901 0.256 -46.887 0.767 -0.373 3.221 -0.322
-2.389 -46.924 2 AA_DG2DU3:DA105CM11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DU 3 1_555 B DA 4 1_555 A DA 4 1_555 B DU 3 1_555 0.309 5.254 3.873 2.250 -9.946 -12.025 -6.039 4.097 6.221 39.429
8.919 -15.754 3 AA_DU3DA4:DU9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DA 4 1_555 B DU 3 1_555 A 5CM 5 1_555 B DG 2 1_555 -0.279 -1.142 3.409 0.258 -1.165 -48.444 1.484 -0.320 3.384 1.419
0.314 -48.458 4 AA_DA45CM5:DG8DU9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A 5CM 5 1_555 B DG 2 1_555 A DG 6 1_555 B 5CM 1 1_555 0.000 5.551 3.558 -2.702 -0.295 -14.031 -22.017 -2.735 3.608 1.192
-10.928 -14.290 5 AA_5CM5DG6:5CM7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
_pdbx_initial_refinement_model.accession_code 1VTW
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details
'ZDFB06 IN WHICH THE METHYL GROUPS OF THE THYMINE BASES WERE REMOVED FROM THE C5 POSITIONS.'
#
_atom_sites.entry_id 1D41
_atom_sites.fract_transf_matrix[1][1] 0.056117
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.032852
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.022462
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 . 5CM A 1 1 ? 15.300 17.856 18.978 1.00 5.29 ? 1 5CM A N1 1
HETATM 2 C C2 . 5CM A 1 1 ? 13.936 17.644 18.769 1.00 5.46 ? 1 5CM A C2 1
HETATM 3 N N3 . 5CM A 1 1 ? 13.198 18.750 18.673 1.00 6.23 ? 1 5CM A N3 1
HETATM 4 C C4 . 5CM A 1 1 ? 13.771 20.037 18.734 1.00 5.07 ? 1 5CM A C4 1
HETATM 5 C C5 . 5CM A 1 1 ? 15.159 20.247 19.018 1.00 5.64 ? 1 5CM A C5 1
HETATM 6 C C5A . 5CM A 1 1 ? 15.684 21.633 19.149 1.00 5.20 ? 1 5CM A C5A 1
HETATM 7 C C6 . 5CM A 1 1 ? 15.819 19.097 19.141 1.00 6.05 ? 1 5CM A C6 1
HETATM 8 O O2 . 5CM A 1 1 ? 13.363 16.538 18.636 1.00 5.70 ? 1 5CM A O2 1
HETATM 9 N N4 . 5CM A 1 1 ? 12.922 21.133 18.620 1.00 6.31 ? 1 5CM A N4 1
HETATM 10 C "C1'" . 5CM A 1 1 ? 16.101 16.621 19.183 1.00 6.78 ? 1 5CM A "C1'" 1
HETATM 11 C "C2'" . 5CM A 1 1 ? 16.529 16.137 17.779 1.00 7.98 ? 1 5CM A "C2'" 1
HETATM 12 C "C3'" . 5CM A 1 1 ? 17.754 15.266 18.331 1.00 9.97 ? 1 5CM A "C3'" 1
HETATM 13 C "C4'" . 5CM A 1 1 ? 18.390 15.972 19.485 1.00 8.88 ? 1 5CM A "C4'" 1
HETATM 14 O "O4'" . 5CM A 1 1 ? 17.194 16.845 19.942 1.00 8.12 ? 1 5CM A "O4'" 1
HETATM 15 O "O3'" . 5CM A 1 1 ? 17.274 14.012 18.713 1.00 12.29 ? 1 5CM A "O3'" 1
HETATM 16 C "C5'" . 5CM A 1 1 ? 19.585 16.850 19.270 1.00 9.20 ? 1 5CM A "C5'" 1
HETATM 17 O "O5'" . 5CM A 1 1 ? 19.304 17.969 18.403 1.00 8.45 ? 1 5CM A "O5'" 1
ATOM 18 P P . DG A 1 2 ? 18.289 12.725 18.600 1.00 14.02 ? 2 DG A P 1
ATOM 19 O OP1 . DG A 1 2 ? 19.187 13.047 17.587 1.00 10.92 ? 2 DG A OP1 1
ATOM 20 O OP2 . DG A 1 2 ? 17.247 11.693 18.838 1.00 13.54 ? 2 DG A OP2 1
ATOM 21 O "O5'" . DG A 1 2 ? 19.416 12.954 19.690 1.00 9.87 ? 2 DG A "O5'" 1
ATOM 22 C "C5'" . DG A 1 2 ? 19.041 12.648 20.946 1.00 10.91 ? 2 DG A "C5'" 1
ATOM 23 C "C4'" . DG A 1 2 ? 20.262 12.680 21.745 1.00 12.27 ? 2 DG A "C4'" 1
ATOM 24 O "O4'" . DG A 1 2 ? 20.604 14.051 21.665 1.00 9.94 ? 2 DG A "O4'" 1
ATOM 25 C "C3'" . DG A 1 2 ? 19.731 12.508 23.283 1.00 13.10 ? 2 DG A "C3'" 1
ATOM 26 O "O3'" . DG A 1 2 ? 19.973 11.143 23.580 1.00 15.32 ? 2 DG A "O3'" 1
ATOM 27 C "C2'" . DG A 1 2 ? 20.439 13.444 24.142 1.00 10.61 ? 2 DG A "C2'" 1
ATOM 28 C "C1'" . DG A 1 2 ? 20.841 14.601 23.042 1.00 10.42 ? 2 DG A "C1'" 1
ATOM 29 N N9 . DG A 1 2 ? 20.242 15.782 23.101 1.00 9.80 ? 2 DG A N9 1
ATOM 30 C C8 . DG A 1 2 ? 20.876 16.970 23.149 1.00 8.38 ? 2 DG A C8 1
ATOM 31 N N7 . DG A 1 2 ? 20.056 18.047 23.228 1.00 8.95 ? 2 DG A N7 1
ATOM 32 C C5 . DG A 1 2 ? 18.813 17.433 23.072 1.00 9.00 ? 2 DG A C5 1
ATOM 33 C C6 . DG A 1 2 ? 17.486 18.040 23.076 1.00 8.55 ? 2 DG A C6 1
ATOM 34 O O6 . DG A 1 2 ? 17.280 19.286 23.077 1.00 7.98 ? 2 DG A O6 1
ATOM 35 N N1 . DG A 1 2 ? 16.485 17.140 22.948 1.00 7.11 ? 2 DG A N1 1
ATOM 36 C C2 . DG A 1 2 ? 16.719 15.859 22.838 1.00 7.81 ? 2 DG A C2 1
ATOM 37 N N2 . DG A 1 2 ? 15.732 15.100 22.721 1.00 6.16 ? 2 DG A N2 1
ATOM 38 N N3 . DG A 1 2 ? 17.814 15.208 22.880 1.00 10.07 ? 2 DG A N3 1
ATOM 39 C C4 . DG A 1 2 ? 18.856 16.079 22.985 1.00 8.31 ? 2 DG A C4 1
ATOM 40 P P . DU A 1 3 ? 18.772 10.100 24.168 1.00 20.73 ? 3 DU A P 1
ATOM 41 O OP1 . DU A 1 3 ? 19.812 9.010 24.472 1.00 19.95 ? 3 DU A OP1 1
ATOM 42 O OP2 . DU A 1 3 ? 17.981 9.962 22.886 1.00 18.04 ? 3 DU A OP2 1
ATOM 43 O "O5'" . DU A 1 3 ? 17.938 10.685 25.419 1.00 15.72 ? 3 DU A "O5'" 1
ATOM 44 C "C5'" . DU A 1 3 ? 17.427 9.727 26.372 1.00 13.22 ? 3 DU A "C5'" 1
ATOM 45 C "C4'" . DU A 1 3 ? 16.224 10.579 26.658 1.00 10.88 ? 3 DU A "C4'" 1
ATOM 46 O "O4'" . DU A 1 3 ? 16.496 11.923 27.096 1.00 9.53 ? 3 DU A "O4'" 1
ATOM 47 C "C3'" . DU A 1 3 ? 15.448 10.824 25.372 1.00 11.62 ? 3 DU A "C3'" 1
ATOM 48 O "O3'" . DU A 1 3 ? 14.161 10.360 25.741 1.00 13.79 ? 3 DU A "O3'" 1
ATOM 49 C "C2'" . DU A 1 3 ? 15.571 12.303 24.944 1.00 9.53 ? 3 DU A "C2'" 1
ATOM 50 C "C1'" . DU A 1 3 ? 15.645 12.809 26.526 1.00 7.53 ? 3 DU A "C1'" 1
ATOM 51 N N1 . DU A 1 3 ? 16.445 14.089 26.542 1.00 8.10 ? 3 DU A N1 1
ATOM 52 C C2 . DU A 1 3 ? 15.693 15.204 26.462 1.00 6.72 ? 3 DU A C2 1
ATOM 53 O O2 . DU A 1 3 ? 14.445 15.166 26.363 1.00 9.98 ? 3 DU A O2 1
ATOM 54 N N3 . DU A 1 3 ? 16.323 16.398 26.390 1.00 6.87 ? 3 DU A N3 1
ATOM 55 C C4 . DU A 1 3 ? 17.644 16.563 26.530 1.00 5.14 ? 3 DU A C4 1
ATOM 56 O O4 . DU A 1 3 ? 18.128 17.738 26.419 1.00 5.85 ? 3 DU A O4 1
ATOM 57 C C5 . DU A 1 3 ? 18.430 15.408 26.588 1.00 7.52 ? 3 DU A C5 1
ATOM 58 C C6 . DU A 1 3 ? 17.810 14.223 26.646 1.00 7.58 ? 3 DU A C6 1
ATOM 59 P P . DA A 1 4 ? 13.779 8.743 25.558 1.00 15.81 ? 4 DA A P 1
ATOM 60 O OP1 . DA A 1 4 ? 14.616 8.099 24.609 1.00 15.38 ? 4 DA A OP1 1
ATOM 61 O OP2 . DA A 1 4 ? 12.369 8.836 25.201 1.00 15.91 ? 4 DA A OP2 1
ATOM 62 O "O5'" . DA A 1 4 ? 14.139 7.950 26.912 1.00 14.95 ? 4 DA A "O5'" 1
ATOM 63 C "C5'" . DA A 1 4 ? 13.644 8.426 28.196 1.00 10.88 ? 4 DA A "C5'" 1
ATOM 64 C "C4'" . DA A 1 4 ? 14.331 7.538 29.167 1.00 9.97 ? 4 DA A "C4'" 1
ATOM 65 O "O4'" . DA A 1 4 ? 15.693 7.726 28.960 1.00 8.54 ? 4 DA A "O4'" 1
ATOM 66 C "C3'" . DA A 1 4 ? 14.044 7.941 30.617 1.00 8.81 ? 4 DA A "C3'" 1
ATOM 67 O "O3'" . DA A 1 4 ? 12.863 7.073 30.739 1.00 10.76 ? 4 DA A "O3'" 1
ATOM 68 C "C2'" . DA A 1 4 ? 15.350 7.734 31.310 1.00 8.40 ? 4 DA A "C2'" 1
ATOM 69 C "C1'" . DA A 1 4 ? 16.490 7.779 30.295 1.00 8.45 ? 4 DA A "C1'" 1
ATOM 70 N N9 . DA A 1 4 ? 17.271 8.968 30.218 1.00 6.75 ? 4 DA A N9 1
ATOM 71 C C8 . DA A 1 4 ? 18.566 9.012 30.092 1.00 6.72 ? 4 DA A C8 1
ATOM 72 N N7 . DA A 1 4 ? 19.079 10.264 30.036 1.00 7.53 ? 4 DA A N7 1
ATOM 73 C C5 . DA A 1 4 ? 17.935 11.005 30.115 1.00 6.43 ? 4 DA A C5 1
ATOM 74 C C6 . DA A 1 4 ? 17.769 12.452 30.067 1.00 6.15 ? 4 DA A C6 1
ATOM 75 N N6 . DA A 1 4 ? 18.891 13.280 29.845 1.00 6.88 ? 4 DA A N6 1
ATOM 76 N N1 . DA A 1 4 ? 16.566 12.964 30.155 1.00 6.29 ? 4 DA A N1 1
ATOM 77 C C2 . DA A 1 4 ? 15.529 12.119 30.281 1.00 5.08 ? 4 DA A C2 1
ATOM 78 N N3 . DA A 1 4 ? 15.575 10.779 30.331 1.00 6.31 ? 4 DA A N3 1
ATOM 79 C C4 . DA A 1 4 ? 16.845 10.273 30.235 1.00 7.45 ? 4 DA A C4 1
HETATM 80 N N1 . 5CM A 1 5 ? 14.505 11.809 33.864 1.00 2.00 ? 5 5CM A N1 1
HETATM 81 C C2 . 5CM A 1 5 ? 14.965 13.082 33.731 1.00 2.00 ? 5 5CM A C2 1
HETATM 82 N N3 . 5CM A 1 5 ? 16.327 13.182 33.688 1.00 2.00 ? 5 5CM A N3 1
HETATM 83 C C4 . 5CM A 1 5 ? 17.172 12.086 33.621 1.00 2.00 ? 5 5CM A C4 1
HETATM 84 C C5 . 5CM A 1 5 ? 16.574 10.814 33.801 1.00 2.00 ? 5 5CM A C5 1
HETATM 85 C C5A . 5CM A 1 5 ? 17.475 9.572 33.838 1.00 2.59 ? 5 5CM A C5A 1
HETATM 86 C C6 . 5CM A 1 5 ? 15.267 10.686 33.922 1.00 2.00 ? 5 5CM A C6 1
HETATM 87 O O2 . 5CM A 1 5 ? 14.288 14.047 33.758 1.00 3.83 ? 5 5CM A O2 1
HETATM 88 N N4 . 5CM A 1 5 ? 18.496 12.353 33.516 1.00 2.00 ? 5 5CM A N4 1
HETATM 89 C "C1'" . 5CM A 1 5 ? 12.989 11.647 33.987 1.00 3.54 ? 5 5CM A "C1'" 1
HETATM 90 C "C2'" . 5CM A 1 5 ? 12.289 11.763 32.616 1.00 4.89 ? 5 5CM A "C2'" 1
HETATM 91 C "C3'" . 5CM A 1 5 ? 11.064 11.082 33.045 1.00 6.93 ? 5 5CM A "C3'" 1
HETATM 92 C "C4'" . 5CM A 1 5 ? 11.202 10.119 34.266 1.00 6.20 ? 5 5CM A "C4'" 1
HETATM 93 O "O4'" . 5CM A 1 5 ? 12.579 10.434 34.530 1.00 4.24 ? 5 5CM A "O4'" 1
HETATM 94 O "O3'" . 5CM A 1 5 ? 10.193 12.182 33.467 1.00 10.54 ? 5 5CM A "O3'" 1
HETATM 95 C "C5'" . 5CM A 1 5 ? 11.164 8.611 34.049 1.00 7.21 ? 5 5CM A "C5'" 1
HETATM 96 O "O5'" . 5CM A 1 5 ? 12.032 8.580 32.795 1.00 10.54 ? 5 5CM A "O5'" 1
HETATM 97 P P . 5CM A 1 5 ? 12.146 7.060 32.186 1.00 12.97 ? 5 5CM A P 1
HETATM 98 O OP1 . 5CM A 1 5 ? 13.264 6.595 32.953 1.00 16.02 ? 5 5CM A OP1 1
HETATM 99 O OP2 . 5CM A 1 5 ? 10.829 6.401 31.881 1.00 14.50 ? 5 5CM A OP2 1
ATOM 100 P P . DG A 1 6 ? 8.598 12.036 33.252 1.00 11.67 ? 6 DG A P 1
ATOM 101 O OP1 . DG A 1 6 ? 8.308 11.427 32.019 1.00 11.60 ? 6 DG A OP1 1
ATOM 102 O OP2 . DG A 1 6 ? 8.182 13.450 33.607 1.00 12.49 ? 6 DG A OP2 1
ATOM 103 O "O5'" . DG A 1 6 ? 8.142 10.772 34.254 1.00 11.36 ? 6 DG A "O5'" 1
ATOM 104 C "C5'" . DG A 1 6 ? 8.229 11.241 35.648 1.00 9.43 ? 6 DG A "C5'" 1
ATOM 105 C "C4'" . DG A 1 6 ? 7.447 10.010 36.292 1.00 9.66 ? 6 DG A "C4'" 1
ATOM 106 O "O4'" . DG A 1 6 ? 8.414 8.982 36.266 1.00 9.15 ? 6 DG A "O4'" 1
ATOM 107 C "C3'" . DG A 1 6 ? 7.066 10.450 37.580 1.00 8.50 ? 6 DG A "C3'" 1
ATOM 108 O "O3'" . DG A 1 6 ? 6.022 9.559 38.098 1.00 11.06 ? 6 DG A "O3'" 1
ATOM 109 C "C2'" . DG A 1 6 ? 8.215 9.965 38.297 1.00 6.81 ? 6 DG A "C2'" 1
ATOM 110 C "C1'" . DG A 1 6 ? 8.840 8.801 37.586 1.00 6.56 ? 6 DG A "C1'" 1
ATOM 111 N N9 . DG A 1 6 ? 10.317 8.664 37.554 1.00 5.93 ? 6 DG A N9 1
ATOM 112 C C8 . DG A 1 6 ? 10.874 7.485 37.485 1.00 4.61 ? 6 DG A C8 1
ATOM 113 N N7 . DG A 1 6 ? 12.196 7.567 37.502 1.00 4.59 ? 6 DG A N7 1
ATOM 114 C C5 . DG A 1 6 ? 12.434 8.991 37.497 1.00 4.93 ? 6 DG A C5 1
ATOM 115 C C6 . DG A 1 6 ? 13.638 9.712 37.402 1.00 4.74 ? 6 DG A C6 1
ATOM 116 O O6 . DG A 1 6 ? 14.816 9.267 37.261 1.00 4.99 ? 6 DG A O6 1
ATOM 117 N N1 . DG A 1 6 ? 13.539 11.095 37.481 1.00 5.00 ? 6 DG A N1 1
ATOM 118 C C2 . DG A 1 6 ? 12.339 11.588 37.383 1.00 4.98 ? 6 DG A C2 1
ATOM 119 N N2 . DG A 1 6 ? 12.254 12.890 37.406 1.00 3.50 ? 6 DG A N2 1
ATOM 120 N N3 . DG A 1 6 ? 11.108 11.008 37.586 1.00 5.57 ? 6 DG A N3 1
ATOM 121 C C4 . DG A 1 6 ? 11.294 9.648 37.525 1.00 5.08 ? 6 DG A C4 1
HETATM 122 N N1 . 5CM B 1 1 ? 16.788 14.829 36.888 1.00 3.58 ? 7 5CM B N1 1
HETATM 123 C C2 . 5CM B 1 1 ? 15.632 14.033 37.088 1.00 4.76 ? 7 5CM B C2 1
HETATM 124 N N3 . 5CM B 1 1 ? 15.895 12.673 37.149 1.00 4.11 ? 7 5CM B N3 1
HETATM 125 C C4 . 5CM B 1 1 ? 17.146 12.152 37.098 1.00 4.52 ? 7 5CM B C4 1
HETATM 126 C C5 . 5CM B 1 1 ? 18.282 12.988 37.001 1.00 4.28 ? 7 5CM B C5 1
HETATM 127 C C5A . 5CM B 1 1 ? 19.652 12.415 36.818 1.00 3.85 ? 7 5CM B C5A 1
HETATM 128 C C6 . 5CM B 1 1 ? 18.046 14.310 36.962 1.00 4.53 ? 7 5CM B C6 1
HETATM 129 O O2 . 5CM B 1 1 ? 14.480 14.433 37.196 1.00 6.13 ? 7 5CM B O2 1
HETATM 130 N N4 . 5CM B 1 1 ? 17.282 10.821 37.193 1.00 5.62 ? 7 5CM B N4 1
HETATM 131 C "C1'" . 5CM B 1 1 ? 16.390 16.313 36.885 1.00 5.51 ? 7 5CM B "C1'" 1
HETATM 132 C "C2'" . 5CM B 1 1 ? 16.440 16.920 38.215 1.00 3.40 ? 7 5CM B "C2'" 1
HETATM 133 C "C3'" . 5CM B 1 1 ? 16.760 18.456 37.828 1.00 5.75 ? 7 5CM B "C3'" 1
HETATM 134 C "C4'" . 5CM B 1 1 ? 17.705 18.399 36.657 1.00 6.43 ? 7 5CM B "C4'" 1
HETATM 135 O "O4'" . 5CM B 1 1 ? 17.480 16.982 36.301 1.00 6.57 ? 7 5CM B "O4'" 1
HETATM 136 O "O3'" . 5CM B 1 1 ? 15.544 19.068 37.582 1.00 6.05 ? 7 5CM B "O3'" 1
HETATM 137 C "C5'" . 5CM B 1 1 ? 19.206 18.734 36.817 1.00 6.80 ? 7 5CM B "C5'" 1
HETATM 138 O "O5'" . 5CM B 1 1 ? 19.757 17.978 37.909 1.00 8.42 ? 7 5CM B "O5'" 1
ATOM 139 P P . DG B 1 2 ? 15.313 20.573 37.557 1.00 7.88 ? 8 DG B P 1
ATOM 140 O OP1 . DG B 1 2 ? 15.890 21.046 38.783 1.00 8.78 ? 8 DG B OP1 1
ATOM 141 O OP2 . DG B 1 2 ? 13.922 20.745 37.444 1.00 9.20 ? 8 DG B OP2 1
ATOM 142 O "O5'" . DG B 1 2 ? 15.903 21.298 36.239 1.00 6.88 ? 8 DG B "O5'" 1
ATOM 143 C "C5'" . DG B 1 2 ? 15.411 20.984 34.948 1.00 5.62 ? 8 DG B "C5'" 1
ATOM 144 C "C4'" . DG B 1 2 ? 16.491 21.670 34.114 1.00 5.23 ? 8 DG B "C4'" 1
ATOM 145 O "O4'" . DG B 1 2 ? 17.796 21.210 34.263 1.00 3.49 ? 8 DG B "O4'" 1
ATOM 146 C "C3'" . DG B 1 2 ? 16.021 21.254 32.574 1.00 4.48 ? 8 DG B "C3'" 1
ATOM 147 O "O3'" . DG B 1 2 ? 15.200 22.360 32.262 1.00 8.66 ? 8 DG B "O3'" 1
ATOM 148 C "C2'" . DG B 1 2 ? 17.280 21.131 31.871 1.00 4.62 ? 8 DG B "C2'" 1
ATOM 149 C "C1'" . DG B 1 2 ? 18.252 20.900 32.865 1.00 4.60 ? 8 DG B "C1'" 1
ATOM 150 N N9 . DG B 1 2 ? 18.828 19.616 32.932 1.00 4.54 ? 8 DG B N9 1
ATOM 151 C C8 . DG B 1 2 ? 20.112 19.277 32.878 1.00 4.77 ? 8 DG B C8 1
ATOM 152 N N7 . DG B 1 2 ? 20.274 17.910 33.034 1.00 3.80 ? 8 DG B N7 1
ATOM 153 C C5 . DG B 1 2 ? 18.983 17.448 33.067 1.00 4.62 ? 8 DG B C5 1
ATOM 154 C C6 . DG B 1 2 ? 18.559 16.086 33.240 1.00 4.84 ? 8 DG B C6 1
ATOM 155 O O6 . DG B 1 2 ? 19.350 15.099 33.197 1.00 3.80 ? 8 DG B O6 1
ATOM 156 N N1 . DG B 1 2 ? 17.232 15.848 33.333 1.00 4.17 ? 8 DG B N1 1
ATOM 157 C C2 . DG B 1 2 ? 16.390 16.919 33.333 1.00 4.72 ? 8 DG B C2 1
ATOM 158 N N2 . DG B 1 2 ? 15.143 16.734 33.433 1.00 3.50 ? 8 DG B N2 1
ATOM 159 N N3 . DG B 1 2 ? 16.693 18.230 33.183 1.00 4.76 ? 8 DG B N3 1
ATOM 160 C C4 . DG B 1 2 ? 18.034 18.408 33.109 1.00 5.38 ? 8 DG B C4 1
ATOM 161 P P . DU B 1 3 ? 13.679 22.401 31.867 1.00 5.97 ? 9 DU B P 1
ATOM 162 O OP1 . DU B 1 3 ? 13.266 23.851 31.630 1.00 9.50 ? 9 DU B OP1 1
ATOM 163 O OP2 . DU B 1 3 ? 12.900 21.969 32.933 1.00 10.28 ? 9 DU B OP2 1
ATOM 164 O "O5'" . DU B 1 3 ? 13.595 21.409 30.663 1.00 6.64 ? 9 DU B "O5'" 1
ATOM 165 C "C5'" . DU B 1 3 ? 12.784 21.458 29.580 1.00 6.38 ? 9 DU B "C5'" 1
ATOM 166 C "C4'" . DU B 1 3 ? 12.181 20.023 29.483 1.00 6.91 ? 9 DU B "C4'" 1
ATOM 167 O "O4'" . DU B 1 3 ? 13.179 19.075 28.932 1.00 6.85 ? 9 DU B "O4'" 1
ATOM 168 C "C3'" . DU B 1 3 ? 11.641 19.222 30.682 1.00 7.07 ? 9 DU B "C3'" 1
ATOM 169 O "O3'" . DU B 1 3 ? 10.531 18.556 30.270 1.00 7.61 ? 9 DU B "O3'" 1
ATOM 170 C "C2'" . DU B 1 3 ? 12.745 18.275 31.123 1.00 6.46 ? 9 DU B "C2'" 1
ATOM 171 C "C1'" . DU B 1 3 ? 13.172 17.906 29.621 1.00 8.58 ? 9 DU B "C1'" 1
ATOM 172 N N1 . DU B 1 3 ? 14.735 17.539 29.686 1.00 7.69 ? 9 DU B N1 1
ATOM 173 C C2 . DU B 1 3 ? 14.909 16.239 29.819 1.00 6.90 ? 9 DU B C2 1
ATOM 174 O O2 . DU B 1 3 ? 14.012 15.470 29.872 1.00 9.32 ? 9 DU B O2 1
ATOM 175 N N3 . DU B 1 3 ? 16.213 15.861 29.835 1.00 7.97 ? 9 DU B N3 1
ATOM 176 C C4 . DU B 1 3 ? 17.264 16.670 29.767 1.00 6.96 ? 9 DU B C4 1
ATOM 177 O O4 . DU B 1 3 ? 18.346 16.101 29.882 1.00 6.25 ? 9 DU B O4 1
ATOM 178 C C5 . DU B 1 3 ? 17.003 18.063 29.606 1.00 5.90 ? 9 DU B C5 1
ATOM 179 C C6 . DU B 1 3 ? 15.770 18.508 29.517 1.00 7.87 ? 9 DU B C6 1
ATOM 180 P P . DA B 1 4 ? 9.006 19.083 30.243 1.00 9.26 ? 10 DA B P 1
ATOM 181 O OP1 . DA B 1 4 ? 8.808 19.935 31.417 1.00 7.26 ? 10 DA B OP1 1
ATOM 182 O OP2 . DA B 1 4 ? 8.203 18.037 29.863 1.00 8.98 ? 10 DA B OP2 1
ATOM 183 O "O5'" . DA B 1 4 ? 8.862 20.023 28.857 1.00 7.28 ? 10 DA B "O5'" 1
ATOM 184 C "C5'" . DA B 1 4 ? 8.610 19.534 27.516 1.00 8.46 ? 10 DA B "C5'" 1
ATOM 185 C "C4'" . DA B 1 4 ? 8.679 20.701 26.694 1.00 8.61 ? 10 DA B "C4'" 1
ATOM 186 O "O4'" . DA B 1 4 ? 9.864 21.519 26.945 1.00 10.40 ? 10 DA B "O4'" 1
ATOM 187 C "C3'" . DA B 1 4 ? 8.867 20.386 25.251 1.00 9.19 ? 10 DA B "C3'" 1
ATOM 188 O "O3'" . DA B 1 4 ? 7.652 20.684 24.639 1.00 11.28 ? 10 DA B "O3'" 1
ATOM 189 C "C2'" . DA B 1 4 ? 10.000 21.145 24.675 1.00 9.90 ? 10 DA B "C2'" 1
ATOM 190 C "C1'" . DA B 1 4 ? 10.629 21.976 25.861 1.00 7.96 ? 10 DA B "C1'" 1
ATOM 191 N N9 . DA B 1 4 ? 11.970 21.660 25.927 1.00 7.23 ? 10 DA B N9 1
ATOM 192 C C8 . DA B 1 4 ? 12.893 22.663 26.095 1.00 6.42 ? 10 DA B C8 1
ATOM 193 N N7 . DA B 1 4 ? 14.151 22.200 26.200 1.00 6.99 ? 10 DA B N7 1
ATOM 194 C C5 . DA B 1 4 ? 14.011 20.830 25.980 1.00 6.86 ? 10 DA B C5 1
ATOM 195 C C6 . DA B 1 4 ? 14.962 19.766 26.073 1.00 6.70 ? 10 DA B C6 1
ATOM 196 N N6 . DA B 1 4 ? 16.301 20.085 26.221 1.00 9.22 ? 10 DA B N6 1
ATOM 197 N N1 . DA B 1 4 ? 14.515 18.503 25.847 1.00 7.25 ? 10 DA B N1 1
ATOM 198 C C2 . DA B 1 4 ? 13.226 18.255 25.628 1.00 5.68 ? 10 DA B C2 1
ATOM 199 N N3 . DA B 1 4 ? 12.215 19.206 25.588 1.00 5.32 ? 10 DA B N3 1
ATOM 200 C C4 . DA B 1 4 ? 12.665 20.440 25.799 1.00 7.64 ? 10 DA B C4 1
HETATM 201 N N1 . 5CM B 1 5 ? 11.649 18.129 21.965 1.00 7.33 ? 11 5CM B N1 1
HETATM 202 C C2 . 5CM B 1 5 ? 12.844 17.505 22.314 1.00 5.21 ? 11 5CM B C2 1
HETATM 203 N N3 . 5CM B 1 5 ? 13.887 18.410 22.384 1.00 6.44 ? 11 5CM B N3 1
HETATM 204 C C4 . 5CM B 1 5 ? 13.820 19.790 22.267 1.00 5.40 ? 11 5CM B C4 1
HETATM 205 C C5 . 5CM B 1 5 ? 12.495 20.294 22.086 1.00 5.57 ? 11 5CM B C5 1
HETATM 206 C C5A . 5CM B 1 5 ? 12.199 21.740 22.074 1.00 3.43 ? 11 5CM B C5A 1
HETATM 207 C C6 . 5CM B 1 5 ? 11.473 19.499 21.874 1.00 5.79 ? 11 5CM B C6 1
HETATM 208 O O2 . 5CM B 1 5 ? 13.095 16.323 22.222 1.00 4.89 ? 11 5CM B O2 1
HETATM 209 N N4 . 5CM B 1 5 ? 14.974 20.488 22.482 1.00 5.52 ? 11 5CM B N4 1
HETATM 210 C "C1'" . 5CM B 1 5 ? 10.582 17.132 21.852 1.00 6.13 ? 11 5CM B "C1'" 1
HETATM 211 C "C2'" . 5CM B 1 5 ? 9.911 16.773 23.267 1.00 8.53 ? 11 5CM B "C2'" 1
HETATM 212 C "C3'" . 5CM B 1 5 ? 8.610 16.226 22.828 1.00 10.22 ? 11 5CM B "C3'" 1
HETATM 213 C "C4'" . 5CM B 1 5 ? 8.258 17.056 21.582 1.00 9.59 ? 11 5CM B "C4'" 1
HETATM 214 O "O4'" . 5CM B 1 5 ? 9.538 17.707 21.247 1.00 9.90 ? 11 5CM B "O4'" 1
HETATM 215 O "O3'" . 5CM B 1 5 ? 8.703 14.872 22.440 1.00 11.83 ? 11 5CM B "O3'" 1
HETATM 216 C "C5'" . 5CM B 1 5 ? 7.329 18.173 21.833 1.00 12.02 ? 11 5CM B "C5'" 1
HETATM 217 O "O5'" . 5CM B 1 5 ? 7.641 19.093 22.736 1.00 11.79 ? 11 5CM B "O5'" 1
HETATM 218 P P . 5CM B 1 5 ? 6.672 19.692 23.803 1.00 12.65 ? 11 5CM B P 1
HETATM 219 O OP1 . 5CM B 1 5 ? 5.542 20.532 23.140 1.00 12.87 ? 11 5CM B OP1 1
HETATM 220 O OP2 . 5CM B 1 5 ? 6.280 18.728 24.864 1.00 12.98 ? 11 5CM B OP2 1
ATOM 221 P P . DG B 1 6 ? 7.403 13.951 22.628 1.00 14.94 ? 12 DG B P 1
ATOM 222 O OP1 . DG B 1 6 ? 6.747 14.213 23.873 1.00 13.60 ? 12 DG B OP1 1
ATOM 223 O OP2 . DG B 1 6 ? 7.951 12.631 22.290 1.00 16.41 ? 12 DG B OP2 1
ATOM 224 O "O5'" . DG B 1 6 ? 6.578 13.953 21.170 1.00 12.59 ? 12 DG B "O5'" 1
ATOM 225 C "C5'" . DG B 1 6 ? 5.351 14.538 21.069 1.00 12.65 ? 12 DG B "C5'" 1
ATOM 226 C "C4'" . DG B 1 6 ? 4.984 14.981 19.645 1.00 11.16 ? 12 DG B "C4'" 1
ATOM 227 O "O4'" . DG B 1 6 ? 5.510 16.218 19.658 1.00 9.08 ? 12 DG B "O4'" 1
ATOM 228 C "C3'" . DG B 1 6 ? 5.747 14.535 18.406 1.00 11.33 ? 12 DG B "C3'" 1
ATOM 229 O "O3'" . DG B 1 6 ? 4.782 13.825 17.851 1.00 15.39 ? 12 DG B "O3'" 1
ATOM 230 C "C2'" . DG B 1 6 ? 5.850 15.592 17.396 1.00 8.75 ? 12 DG B "C2'" 1
ATOM 231 C "C1'" . DG B 1 6 ? 5.510 16.760 18.321 1.00 8.80 ? 12 DG B "C1'" 1
ATOM 232 N N9 . DG B 1 6 ? 6.383 17.848 18.285 1.00 7.28 ? 12 DG B N9 1
ATOM 233 C C8 . DG B 1 6 ? 6.050 19.132 18.255 1.00 7.76 ? 12 DG B C8 1
ATOM 234 N N7 . DG B 1 6 ? 7.161 19.908 18.279 1.00 8.34 ? 12 DG B N7 1
ATOM 235 C C5 . DG B 1 6 ? 8.227 19.031 18.348 1.00 8.08 ? 12 DG B C5 1
ATOM 236 C C6 . DG B 1 6 ? 9.643 19.296 18.299 1.00 8.79 ? 12 DG B C6 1
ATOM 237 O O6 . DG B 1 6 ? 10.098 20.499 18.303 1.00 7.44 ? 12 DG B O6 1
ATOM 238 N N1 . DG B 1 6 ? 10.496 18.197 18.279 1.00 5.88 ? 12 DG B N1 1
ATOM 239 C C2 . DG B 1 6 ? 9.851 17.058 18.311 1.00 6.12 ? 12 DG B C2 1
ATOM 240 N N2 . DG B 1 6 ? 10.512 15.952 18.352 1.00 8.54 ? 12 DG B N2 1
ATOM 241 N N3 . DG B 1 6 ? 8.615 16.667 18.257 1.00 7.97 ? 12 DG B N3 1
ATOM 242 C C4 . DG B 1 6 ? 7.800 17.731 18.283 1.00 7.48 ? 12 DG B C4 1
HETATM 243 MG MG . MG C 2 . ? 11.294 22.267 34.031 1.00 14.93 ? 13 MG B MG 1
HETATM 244 MG MG . MG D 2 . ? 21.592 18.745 28.471 1.00 24.79 ? 14 MG B MG 1
HETATM 245 O O . HOH E 3 . ? 23.391 10.133 25.706 1.00 25.97 ? 16 HOH A O 1
HETATM 246 O O . HOH E 3 . ? 15.585 12.066 21.882 1.00 27.73 ? 17 HOH A O 1
HETATM 247 O O . HOH E 3 . ? 9.676 14.678 36.226 1.00 15.99 ? 18 HOH A O 1
HETATM 248 O O . HOH E 3 . ? 21.277 11.141 33.978 1.00 14.11 ? 19 HOH A O 1
HETATM 249 O O . HOH E 3 . ? 20.379 11.168 25.457 1.00 13.61 ? 20 HOH A O 1
HETATM 250 O O . HOH E 3 . ? 20.554 6.727 25.960 1.00 38.17 ? 21 HOH A O 1
HETATM 251 O O . HOH E 3 . ? 8.650 3.765 32.224 1.00 27.34 ? 24 HOH A O 1
HETATM 252 O O . HOH E 3 . ? 17.218 6.207 26.828 1.00 12.29 ? 26 HOH A O 1
HETATM 253 O O . HOH E 3 . ? 20.195 20.459 19.175 1.00 17.80 ? 27 HOH A O 1
HETATM 254 O O . HOH E 3 . ? 13.053 24.014 19.108 1.00 8.38 ? 29 HOH A O 1
HETATM 255 O O . HOH E 3 . ? 20.404 16.389 15.791 1.00 16.24 ? 33 HOH A O 1
HETATM 256 O O . HOH E 3 . ? 12.508 11.226 29.472 1.00 36.02 ? 34 HOH A O 1
HETATM 257 O O . HOH E 3 . ? 10.426 5.452 28.613 1.00 17.20 ? 36 HOH A O 1
HETATM 258 O O . HOH E 3 . ? 19.356 21.089 21.730 1.00 21.06 ? 37 HOH A O 1
HETATM 259 O O . HOH E 3 . ? 9.206 9.774 29.330 1.00 25.25 ? 38 HOH A O 1
HETATM 260 O O . HOH E 3 . ? 21.029 10.438 32.460 1.00 19.54 ? 39 HOH A O 1
HETATM 261 O O . HOH E 3 . ? 22.868 12.827 34.525 1.00 22.20 ? 40 HOH A O 1
HETATM 262 O O . HOH E 3 . ? 21.388 12.788 28.021 1.00 25.22 ? 41 HOH A O 1
HETATM 263 O O . HOH E 3 . ? 12.127 16.109 34.855 1.00 16.73 ? 44 HOH A O 1
HETATM 264 O O . HOH E 3 . ? 3.398 15.330 36.502 1.00 19.23 ? 46 HOH A O 1
HETATM 265 O O . HOH E 3 . ? 16.972 8.907 19.522 1.00 20.45 ? 48 HOH A O 1
HETATM 266 O O . HOH E 3 . ? 7.933 16.572 33.849 1.00 23.55 ? 49 HOH A O 1
HETATM 267 O O . HOH E 3 . ? 11.838 8.191 21.895 1.00 20.01 ? 51 HOH A O 1
HETATM 268 O O . HOH E 3 . ? 16.548 7.500 38.140 1.00 20.96 ? 52 HOH A O 1
HETATM 269 O O . HOH E 3 . ? 14.618 8.700 20.448 1.00 22.10 ? 53 HOH A O 1
HETATM 270 O O . HOH E 3 . ? 6.615 11.363 29.588 1.00 27.99 ? 54 HOH A O 1
HETATM 271 O O . HOH E 3 . ? 14.071 10.401 22.167 1.00 14.01 ? 55 HOH A O 1
HETATM 272 O O . HOH E 3 . ? 11.731 14.614 25.537 1.00 28.94 ? 58 HOH A O 1
HETATM 273 O O . HOH E 3 . ? 9.261 9.013 21.129 1.00 22.28 ? 63 HOH A O 1
HETATM 274 O O . HOH E 3 . ? 22.703 20.240 27.451 1.00 27.96 ? 69 HOH A O 1
HETATM 275 O O . HOH E 3 . ? 19.809 19.807 28.408 1.00 26.83 ? 71 HOH A O 1
HETATM 276 O O . HOH E 3 . ? 23.369 17.734 28.622 1.00 24.44 ? 72 HOH A O 1
HETATM 277 O O . HOH E 3 . ? 21.919 19.950 30.269 1.00 25.97 ? 73 HOH A O 1
HETATM 278 O O . HOH E 3 . ? 20.906 17.920 26.690 1.00 25.49 ? 74 HOH A O 1
HETATM 279 O O . HOH F 3 . ? 22.984 19.235 38.501 1.00 22.59 ? 15 HOH B O 1
HETATM 280 O O . HOH F 3 . ? 16.949 22.471 25.911 1.00 23.48 ? 22 HOH B O 1
HETATM 281 O O . HOH F 3 . ? 11.786 14.910 31.658 1.00 29.15 ? 23 HOH B O 1
HETATM 282 O O . HOH F 3 . ? 9.899 15.464 27.593 1.00 36.42 ? 25 HOH B O 1
HETATM 283 O O . HOH F 3 . ? 13.060 18.593 35.060 1.00 17.52 ? 28 HOH B O 1
HETATM 284 O O . HOH F 3 . ? 21.355 18.937 36.707 1.00 26.36 ? 30 HOH B O 1
HETATM 285 O O . HOH F 3 . ? 23.255 17.141 32.468 1.00 10.77 ? 31 HOH B O 1
HETATM 286 O O . HOH F 3 . ? 8.078 15.640 31.418 1.00 23.20 ? 32 HOH B O 1
HETATM 287 O O . HOH F 3 . ? 4.924 15.190 29.152 1.00 25.16 ? 35 HOH B O 1
HETATM 288 O O . HOH F 3 . ? 9.493 13.588 19.415 1.00 24.12 ? 42 HOH B O 1
HETATM 289 O O . HOH F 3 . ? 15.858 23.195 22.888 1.00 5.39 ? 43 HOH B O 1
HETATM 290 O O . HOH F 3 . ? 13.729 24.261 37.695 1.00 39.38 ? 45 HOH B O 1
HETATM 291 O O . HOH F 3 . ? 12.718 13.598 22.447 1.00 27.25 ? 47 HOH B O 1
HETATM 292 O O . HOH F 3 . ? 19.313 9.071 37.397 1.00 19.55 ? 50 HOH B O 1
HETATM 293 O O . HOH F 3 . ? 8.764 13.738 26.107 1.00 31.14 ? 56 HOH B O 1
HETATM 294 O O . HOH F 3 . ? 5.471 15.683 25.412 1.00 20.02 ? 57 HOH B O 1
HETATM 295 O O . HOH F 3 . ? 22.441 19.947 41.248 1.00 29.08 ? 59 HOH B O 1
HETATM 296 O O . HOH F 3 . ? 11.752 12.377 19.299 1.00 26.19 ? 60 HOH B O 1
HETATM 297 O O . HOH F 3 . ? 19.556 21.271 24.869 1.00 17.92 ? 61 HOH B O 1
HETATM 298 O O . HOH F 3 . ? 23.020 17.314 37.259 1.00 23.67 ? 62 HOH B O 1
HETATM 299 O O . HOH F 3 . ? 11.013 20.249 34.263 1.00 15.58 ? 64 HOH B O 1
HETATM 300 O O . HOH F 3 . ? 11.414 24.306 33.590 1.00 11.99 ? 65 HOH B O 1
HETATM 301 O O . HOH F 3 . ? 9.983 22.236 32.215 1.00 13.03 ? 66 HOH B O 1
HETATM 302 O O . HOH F 3 . ? 12.257 22.863 35.709 1.00 13.31 ? 67 HOH B O 1
HETATM 303 O O . HOH F 3 . ? 9.507 22.873 35.122 1.00 15.91 ? 68 HOH B O 1
HETATM 304 O O . HOH F 3 . ? 20.605 17.196 29.628 1.00 25.14 ? 70 HOH B O 1
#