data_1D36
#
_entry.id 1D36
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1D36 pdb_00001d36 10.2210/pdb1d36/pdb
RCSB DDF026 ? ?
WWPDB D_1000172640 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1992-04-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp
2 4 'Structure model' chem_comp_atom
3 4 'Structure model' chem_comp_bond
4 4 'Structure model' database_2
5 4 'Structure model' pdbx_struct_conn_angle
6 4 'Structure model' struct_conn
7 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_chem_comp.pdbx_synonyms'
2 4 'Structure model' '_database_2.pdbx_DOI'
3 4 'Structure model' '_database_2.pdbx_database_accession'
4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
16 4 'Structure model' '_pdbx_struct_conn_angle.value'
17 4 'Structure model' '_struct_conn.pdbx_dist_value'
18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'
30 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
31 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
32 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1D36
_pdbx_database_status.recvd_initial_deposition_date 1991-04-23
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gao, Y.-G.' 1
'Liaw, Y.-C.' 2
'Li, Y.-K.' 3
'Van Der Marel, G.A.' 4
'Van Boom, J.H.' 5
'Wang, A.H.-J.' 6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary
;Facile formation of a crosslinked adduct between DNA and the daunorubicin derivative MAR70 mediated by formaldehyde: molecular structure of the MAR70-d(CGTnACG) covalent adduct.
;
Proc.Natl.Acad.Sci.USA 88 4845 4849 1991 PNASA6 US 0027-8424 0040 ? 2052564 10.1073/pnas.88.11.4845
1
;Influence of Aglycone Modifications on the Binding of Anthracycline Drugs to DNA: The Molecular Structure of Idarubicin and 4-O-Demethyl-11- Deoxydoxorubicin Complexed to d(CGATCG)
;
'Anti-Cancer Drug Des.' 6 137 ? 1991 ACDDEA UK 0266-9536 0807 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gao, Y.G.' 1 ?
primary 'Liaw, Y.C.' 2 ?
primary 'Li, Y.K.' 3 ?
primary 'van der Marel, G.A.' 4 ?
primary 'van Boom, J.H.' 5 ?
primary 'Wang, A.H.' 6 ?
1 'Gao, Y.-G.' 7 ?
1 'Wang, A.H.-J.' 8 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn "4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN" 657.662 1 ? ? ? ?
3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
4 water nat water 18.015 68 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN" MAR
3 'MAGNESIUM ION' MG
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
MAR non-polymer . "4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN" 'MAR70; DAUNOMYCIN DERIVATIVE' 'C33 H39 N O13' 657.662
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MAR 1 7 7 MAR MAR A .
C 3 MG 1 8 8 MG MG A .
D 4 HOH 1 9 9 HOH HOH A .
D 4 HOH 2 10 10 HOH HOH A .
D 4 HOH 3 11 11 HOH HOH A .
D 4 HOH 4 12 12 HOH HOH A .
D 4 HOH 5 13 13 HOH HOH A .
D 4 HOH 6 14 14 HOH HOH A .
D 4 HOH 7 15 15 HOH HOH A .
D 4 HOH 8 16 16 HOH HOH A .
D 4 HOH 9 17 17 HOH HOH A .
D 4 HOH 10 18 18 HOH HOH A .
D 4 HOH 11 19 19 HOH HOH A .
D 4 HOH 12 20 20 HOH HOH A .
D 4 HOH 13 21 21 HOH HOH A .
D 4 HOH 14 22 22 HOH HOH A .
D 4 HOH 15 23 23 HOH HOH A .
D 4 HOH 16 24 24 HOH HOH A .
D 4 HOH 17 25 25 HOH HOH A .
D 4 HOH 18 26 26 HOH HOH A .
D 4 HOH 19 27 27 HOH HOH A .
D 4 HOH 20 28 28 HOH HOH A .
D 4 HOH 21 29 29 HOH HOH A .
D 4 HOH 22 30 30 HOH HOH A .
D 4 HOH 23 31 31 HOH HOH A .
D 4 HOH 24 32 32 HOH HOH A .
D 4 HOH 25 33 33 HOH HOH A .
D 4 HOH 26 34 34 HOH HOH A .
D 4 HOH 27 35 35 HOH HOH A .
D 4 HOH 28 36 36 HOH HOH A .
D 4 HOH 29 37 37 HOH HOH A .
D 4 HOH 30 38 38 HOH HOH A .
D 4 HOH 31 39 39 HOH HOH A .
D 4 HOH 32 40 40 HOH HOH A .
D 4 HOH 33 41 41 HOH HOH A .
D 4 HOH 34 42 42 HOH HOH A .
D 4 HOH 35 43 43 HOH HOH A .
D 4 HOH 36 44 44 HOH HOH A .
D 4 HOH 37 45 45 HOH HOH A .
D 4 HOH 38 46 46 HOH HOH A .
D 4 HOH 39 47 47 HOH HOH A .
D 4 HOH 40 48 48 HOH HOH A .
D 4 HOH 41 49 49 HOH HOH A .
D 4 HOH 42 50 50 HOH HOH A .
D 4 HOH 43 51 51 HOH HOH A .
D 4 HOH 44 52 52 HOH HOH A .
D 4 HOH 45 53 53 HOH HOH A .
D 4 HOH 46 54 54 HOH HOH A .
D 4 HOH 47 55 55 HOH HOH A .
D 4 HOH 48 56 56 HOH HOH A .
D 4 HOH 49 57 57 HOH HOH A .
D 4 HOH 50 58 58 HOH HOH A .
D 4 HOH 51 59 59 HOH HOH A .
D 4 HOH 52 60 60 HOH HOH A .
D 4 HOH 53 61 61 HOH HOH A .
D 4 HOH 54 62 62 HOH HOH A .
D 4 HOH 55 63 63 HOH HOH A .
D 4 HOH 56 64 64 HOH HOH A .
D 4 HOH 57 65 65 HOH HOH A .
D 4 HOH 58 66 66 HOH HOH A .
D 4 HOH 59 67 67 HOH HOH A .
D 4 HOH 60 68 68 HOH HOH A .
D 4 HOH 61 69 69 HOH HOH A .
D 4 HOH 62 70 70 HOH HOH A .
D 4 HOH 63 71 71 HOH HOH A .
D 4 HOH 64 72 72 HOH HOH A .
D 4 HOH 65 73 73 HOH HOH A .
D 4 HOH 66 74 74 HOH HOH A .
D 4 HOH 67 75 75 HOH HOH A .
D 4 HOH 68 76 76 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1D36
_cell.length_a 28.010
_cell.length_b 28.010
_cell.length_c 53.110
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1D36
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 1D36
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.88
_exptl_crystal.density_percent_sol 57.27
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 MGCL2 ? ? ?
1 4 1 'NA CACODYLATE' ? ? ?
1 5 1 SPERMINE ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details 'ROOM TEMPERATURE'
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5R'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type RIGAKU
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1D36
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F 2.000
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.500
_reflns.number_obs 2168
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1D36
_refine.ls_number_reflns_obs 2168
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.500
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1640000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 48
_refine_hist.number_atoms_solvent 68
_refine_hist.number_atoms_total 236
_refine_hist.d_res_high 1.500
_refine_hist.d_res_low .
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d 0.164 ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 1D36
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1D36
_struct.title
;FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1D36
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1D36
_struct_ref.pdbx_db_accession 1D36
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1D36
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1D36
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.0100000000 -1.0000000000
0.0000000000 0.0000000000 28.0100000000 0.0000000000 0.0000000000 -1.0000000000 26.5550000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 C MG . MG ? ? A DG 6 A MG 8 1_555 ? ? ? ? ? ? ? 2.764 ? ?
metalc2 metalc ? ? B MAR . O6 ? ? ? 1_555 C MG . MG ? ? A MAR 7 A MG 8 1_555 ? ? ? ? ? ? ? 3.090 ? ?
metalc3 metalc ? ? B MAR . O4 ? ? ? 1_555 C MG . MG ? ? A MAR 7 A MG 8 1_555 ? ? ? ? ? ? ? 2.976 ? ?
metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 9 1_555 ? ? ? ? ? ? ? 3.072 ? ?
metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 10 1_555 ? ? ? ? ? ? ? 2.961 ? ?
metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 11 1_555 ? ? ? ? ? ? ? 2.852 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 3 A DA 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 3 A DA 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 4 A DT 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 4 A DT 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O6 ? B MAR . ? A MAR 7 ? 1_555 74.0 ?
2 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O4 ? B MAR . ? A MAR 7 ? 1_555 123.2 ?
3 O6 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O4 ? B MAR . ? A MAR 7 ? 1_555 50.5 ?
4 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 9 ? 1_555 95.1 ?
5 O6 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 9 ? 1_555 95.6 ?
6 O4 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 9 ? 1_555 81.0 ?
7 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 100.6 ?
8 O6 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 109.8 ?
9 O4 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 107.8 ?
10 O ? D HOH . ? A HOH 9 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 152.9 ?
11 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 125.8 ?
12 O6 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 155.0 ?
13 O4 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 105.9 ?
14 O ? D HOH . ? A HOH 9 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 69.7 ?
15 O ? D HOH . ? A HOH 10 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 83.2 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A MAR 7 ? 13 'BINDING SITE FOR RESIDUE MAR A 7'
AC2 Software A MG 8 ? 5 'BINDING SITE FOR RESIDUE MG A 8'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 13 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 13 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 13 DT A 3 ? DT A 3 . ? 8_665 ?
4 AC1 13 DA A 4 ? DA A 4 . ? 1_555 ?
5 AC1 13 DA A 4 ? DA A 4 . ? 8_665 ?
6 AC1 13 DC A 5 ? DC A 5 . ? 1_555 ?
7 AC1 13 DG A 6 ? DG A 6 . ? 1_555 ?
8 AC1 13 MG C . ? MG A 8 . ? 1_555 ?
9 AC1 13 HOH D . ? HOH A 17 . ? 1_555 ?
10 AC1 13 HOH D . ? HOH A 30 . ? 1_555 ?
11 AC1 13 HOH D . ? HOH A 41 . ? 1_555 ?
12 AC1 13 HOH D . ? HOH A 62 . ? 1_555 ?
13 AC1 13 HOH D . ? HOH A 71 . ? 1_555 ?
14 AC2 5 DG A 6 ? DG A 6 . ? 1_555 ?
15 AC2 5 MAR B . ? MAR A 7 . ? 1_555 ?
16 AC2 5 HOH D . ? HOH A 9 . ? 1_555 ?
17 AC2 5 HOH D . ? HOH A 10 . ? 1_555 ?
18 AC2 5 HOH D . ? HOH A 11 . ? 1_555 ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 OP2 A DC 5 ? ? O A HOH 38 ? ? 1.91
2 1 O A HOH 15 ? ? O A HOH 38 ? ? 1.91
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.701 1.593 0.108 0.010 N
2 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.349 1.391 -0.042 0.007 N
3 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? 1.385 1.446 -0.061 0.010 N
4 1 "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? 1.463 1.516 -0.053 0.008 N
5 1 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.378 1.446 -0.068 0.010 N
6 1 C2 A DA 4 ? ? N3 A DA 4 ? ? 1.389 1.331 0.058 0.009 N
7 1 N7 A DA 4 ? ? C8 A DA 4 ? ? 1.256 1.311 -0.055 0.007 N
8 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.670 1.593 0.077 0.010 N
9 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.690 1.593 0.097 0.010 N
10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.494 1.420 0.074 0.011 N
11 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.333 1.391 -0.058 0.007 N
12 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.318 1.374 -0.056 0.007 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.26 108.30 2.96 0.30 N
2 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 117.38 120.30 -2.92 0.40 N
3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 117.25 121.90 -4.65 0.40 N
4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.82 118.00 4.82 0.70 N
5 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 139.40 119.70 19.70 1.20 Y
6 1 "O3'" A DC 1 ? ? P A DG 2 ? ? "O5'" A DG 2 ? ? 90.97 104.00 -13.03 1.90 Y
7 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.47 102.40 -4.93 0.80 N
8 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 118.45 108.30 10.15 0.30 N
9 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 127.13 119.70 7.43 1.20 Y
10 1 N1 A DT 3 ? ? C2 A DT 3 ? ? N3 A DT 3 ? ? 120.13 114.60 5.53 0.60 N
11 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 120.66 127.20 -6.54 0.60 N
12 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 119.49 115.20 4.29 0.60 N
13 1 N1 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 117.93 123.10 -5.17 0.80 N
14 1 N3 A DT 3 ? ? C4 A DT 3 ? ? O4 A DT 3 ? ? 113.62 119.90 -6.28 0.60 N
15 1 OP1 A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 148.84 119.60 29.24 1.50 N
16 1 "O5'" A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 95.15 105.70 -10.55 0.90 N
17 1 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? "O4'" A DA 4 ? ? 117.59 109.80 7.79 1.10 N
18 1 C6 A DA 4 ? ? N1 A DA 4 ? ? C2 A DA 4 ? ? 123.98 118.60 5.38 0.60 N
19 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 114.04 117.70 -3.66 0.50 N
20 1 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DC 5 ? ? 129.57 119.70 9.87 1.20 Y
21 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 116.51 108.30 8.21 0.30 N
22 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 90.96 105.20 -14.24 2.20 Y
23 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 119.56 110.50 9.06 1.10 Y
24 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 101.90 108.00 -6.10 0.70 N
25 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.94 111.50 4.44 0.50 N
26 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 121.97 128.60 -6.63 0.60 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
MAR C1 C Y N 147
MAR C2 C Y N 148
MAR C3 C Y N 149
MAR C4 C Y N 150
MAR O4 O N N 151
MAR C5 C Y N 152
MAR C6 C N N 153
MAR O6 O N N 154
MAR C7 C Y N 155
MAR C8 C Y N 156
MAR O8 O N N 157
MAR C9 C Y N 158
MAR C10 C N S 159
MAR O10 O N N 160
MAR C11 C N N 161
MAR C12 C N S 162
MAR O12 O N N 163
MAR C13 C N N 164
MAR O13 O N N 165
MAR C14 C N N 166
MAR C15 C N N 167
MAR C16 C Y N 168
MAR C17 C Y N 169
MAR O17 O N N 170
MAR C18 C Y N 171
MAR C19 C N N 172
MAR O19 O N N 173
MAR C20 C Y N 174
MAR C21 C N N 175
MAR "C1'" C N R 176
MAR "C2'" C N N 177
MAR "C3'" C N S 178
MAR "N3'" N N N 179
MAR "C4'" C N S 180
MAR "O4'" O N N 181
MAR "C5'" C N S 182
MAR "O5'" O N N 183
MAR "C6'" C N N 184
MAR CB1 C N S 185
MAR CB2 C N N 186
MAR CB3 C N S 187
MAR OB3 O N N 188
MAR CB4 C N R 189
MAR OB4 O N N 190
MAR CB5 C N S 191
MAR OB5 O N N 192
MAR CB6 C N N 193
MAR H1 H N N 194
MAR H2 H N N 195
MAR H3 H N N 196
MAR HO8 H N N 197
MAR H10 H N N 198
MAR H111 H N N 199
MAR H112 H N N 200
MAR HO12 H N N 201
MAR H141 H N N 202
MAR H142 H N N 203
MAR H143 H N N 204
MAR H151 H N N 205
MAR H152 H N N 206
MAR HO17 H N N 207
MAR H211 H N N 208
MAR H212 H N N 209
MAR H213 H N N 210
MAR "H1'" H N N 211
MAR "H2'1" H N N 212
MAR "H2'2" H N N 213
MAR "H3'" H N N 214
MAR "HN'1" H N N 215
MAR "HN'2" H N N 216
MAR "H4'" H N N 217
MAR "H5'" H N N 218
MAR "H6'1" H N N 219
MAR "H6'2" H N N 220
MAR "H6'3" H N N 221
MAR HB1 H N N 222
MAR HB21 H N N 223
MAR HB22 H N N 224
MAR HB3 H N N 225
MAR HOB3 H N N 226
MAR HB4 H N N 227
MAR HOB4 H N N 228
MAR HB5 H N N 229
MAR HB61 H N N 230
MAR HB62 H N N 231
MAR HB63 H N N 232
MG MG MG N N 233
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
MAR C1 C2 doub Y N 152
MAR C1 C20 sing Y N 153
MAR C1 H1 sing N N 154
MAR C2 C3 sing Y N 155
MAR C2 H2 sing N N 156
MAR C3 C4 doub Y N 157
MAR C3 H3 sing N N 158
MAR C4 O4 sing N N 159
MAR C4 C5 sing Y N 160
MAR O4 C21 sing N N 161
MAR C5 C6 sing N N 162
MAR C5 C20 doub Y N 163
MAR C6 O6 doub N N 164
MAR C6 C7 sing N N 165
MAR C7 C8 doub Y N 166
MAR C7 C18 sing Y N 167
MAR C8 O8 sing N N 168
MAR C8 C9 sing Y N 169
MAR O8 HO8 sing N N 170
MAR C9 C10 sing N N 171
MAR C9 C16 doub Y N 172
MAR C10 O10 sing N N 173
MAR C10 C11 sing N N 174
MAR C10 H10 sing N N 175
MAR O10 "C1'" sing N N 176
MAR C11 C12 sing N N 177
MAR C11 H111 sing N N 178
MAR C11 H112 sing N N 179
MAR C12 O12 sing N N 180
MAR C12 C13 sing N N 181
MAR C12 C15 sing N N 182
MAR O12 HO12 sing N N 183
MAR C13 O13 doub N N 184
MAR C13 C14 sing N N 185
MAR C14 H141 sing N N 186
MAR C14 H142 sing N N 187
MAR C14 H143 sing N N 188
MAR C15 C16 sing N N 189
MAR C15 H151 sing N N 190
MAR C15 H152 sing N N 191
MAR C16 C17 sing Y N 192
MAR C17 O17 sing N N 193
MAR C17 C18 doub Y N 194
MAR O17 HO17 sing N N 195
MAR C18 C19 sing N N 196
MAR C19 O19 doub N N 197
MAR C19 C20 sing N N 198
MAR C21 H211 sing N N 199
MAR C21 H212 sing N N 200
MAR C21 H213 sing N N 201
MAR "C1'" "C2'" sing N N 202
MAR "C1'" "O5'" sing N N 203
MAR "C1'" "H1'" sing N N 204
MAR "C2'" "C3'" sing N N 205
MAR "C2'" "H2'1" sing N N 206
MAR "C2'" "H2'2" sing N N 207
MAR "C3'" "N3'" sing N N 208
MAR "C3'" "C4'" sing N N 209
MAR "C3'" "H3'" sing N N 210
MAR "N3'" "HN'1" sing N N 211
MAR "N3'" "HN'2" sing N N 212
MAR "C4'" "O4'" sing N N 213
MAR "C4'" "C5'" sing N N 214
MAR "C4'" "H4'" sing N N 215
MAR "O4'" CB1 sing N N 216
MAR "C5'" "O5'" sing N N 217
MAR "C5'" "C6'" sing N N 218
MAR "C5'" "H5'" sing N N 219
MAR "C6'" "H6'1" sing N N 220
MAR "C6'" "H6'2" sing N N 221
MAR "C6'" "H6'3" sing N N 222
MAR CB1 CB2 sing N N 223
MAR CB1 OB5 sing N N 224
MAR CB1 HB1 sing N N 225
MAR CB2 CB3 sing N N 226
MAR CB2 HB21 sing N N 227
MAR CB2 HB22 sing N N 228
MAR CB3 OB3 sing N N 229
MAR CB3 CB4 sing N N 230
MAR CB3 HB3 sing N N 231
MAR OB3 HOB3 sing N N 232
MAR CB4 OB4 sing N N 233
MAR CB4 CB5 sing N N 234
MAR CB4 HB4 sing N N 235
MAR OB4 HOB4 sing N N 236
MAR CB5 OB5 sing N N 237
MAR CB5 CB6 sing N N 238
MAR CB5 HB5 sing N N 239
MAR CB6 HB61 sing N N 240
MAR CB6 HB62 sing N N 241
MAR CB6 HB63 sing N N 242
#
_ndb_struct_conf_na.entry_id 1D36
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.149 -0.239 -0.027 5.560 0.309 -2.495 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 -0.129 -0.183 -0.312 -16.978 2.730 0.273 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DT 3 1_555 A DA 4 8_665 -0.175 -0.210 0.041 -4.954 -5.121 3.579 3 A_DT3:DA4_A A 3 ? A 4 ? 20 1
1 A DA 4 1_555 A DT 3 8_665 0.175 -0.210 0.041 4.954 -5.121 3.579 4 A_DA4:DT3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_665 0.129 -0.183 -0.312 16.978 2.730 0.273 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.149 -0.239 -0.027 -5.560 0.309 -2.495 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.151 1.237 7.056 1.235 -2.484 35.992 2.752 -1.481 6.993 -4.012 -1.995
36.095 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A DT 3 1_555 A DA 4 8_665 -0.950 0.007 3.150 -2.759 -2.658 28.102 0.614 1.318 3.212 -5.441 5.648
28.357 2 AA_DG2DT3:DA4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DT 3 1_555 A DA 4 8_665 A DA 4 1_555 A DT 3 8_665 0.000 0.225 3.214 0.000 9.121 37.978 -0.754 0.000 3.182 13.773 0.000
39.018 3 AA_DT3DA4:DT3DA4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DA 4 1_555 A DT 3 8_665 A DC 5 1_555 A DG 2 8_665 0.950 0.007 3.150 2.759 -2.658 28.102 0.614 -1.318 3.212 -5.441 -5.648
28.357 4 AA_DA4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.151 1.237 7.056 -1.235 -2.484 35.992 2.752 1.481 6.993 -4.012 1.995
36.095 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 1D36
_atom_sites.fract_transf_matrix[1][1] 0.035702
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035702
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018829
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.252 19.943 22.938 1.00 16.50 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.532 21.022 23.846 1.00 15.05 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.011 20.982 24.181 1.00 14.66 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.142 19.800 24.967 1.00 14.64 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 11.983 20.870 23.023 1.00 14.89 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.168 21.663 23.145 1.00 15.47 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.369 19.361 23.055 1.00 13.90 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.246 19.002 24.574 1.00 12.78 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 11.943 17.587 24.696 1.00 11.38 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 12.904 16.630 24.855 1.00 10.67 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.106 16.977 24.861 1.00 11.67 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.579 15.307 24.840 1.00 10.32 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.316 14.887 24.850 1.00 9.84 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 10.994 13.635 24.861 1.00 10.31 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.277 15.898 24.733 1.00 10.15 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.621 17.165 24.664 1.00 10.33 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.851 22.907 22.460 1.00 21.83 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.820 23.514 23.278 1.00 20.85 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.742 23.568 21.775 1.00 22.26 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.616 21.898 21.324 1.00 16.55 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 15.854 21.307 21.552 1.00 15.43 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.285 20.543 20.331 1.00 15.41 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.506 19.380 20.208 1.00 14.70 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 16.075 21.262 18.992 1.00 15.55 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 17.232 20.960 18.158 1.00 17.83 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 14.767 20.725 18.472 1.00 15.12 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 14.969 19.260 18.897 1.00 13.25 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 13.759 18.489 18.716 1.00 12.15 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.456 18.859 18.668 1.00 11.66 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.635 17.834 18.541 1.00 11.95 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.470 16.736 18.392 1.00 10.92 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.215 15.341 18.217 1.00 10.20 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.092 14.831 18.126 1.00 11.19 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.324 14.574 18.190 1.00 9.69 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.579 15.050 18.318 1.00 8.30 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.585 14.201 18.286 1.00 8.96 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 14.873 16.333 18.450 1.00 9.90 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 13.784 17.109 18.482 1.00 10.78 ? 2 DG A C4 1
ATOM 39 P P . DT A 1 3 ? 17.924 21.918 17.091 1.00 24.60 ? 3 DT A P 1
ATOM 40 O OP1 . DT A 1 3 ? 18.652 22.991 17.776 1.00 23.74 ? 3 DT A OP1 1
ATOM 41 O OP2 . DT A 1 3 ? 16.770 22.094 16.145 1.00 25.98 ? 3 DT A OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? 19.069 20.907 16.538 1.00 17.46 ? 3 DT A "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? 19.839 20.106 17.362 1.00 16.16 ? 3 DT A "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? 19.870 18.733 16.804 1.00 15.32 ? 3 DT A "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? 18.691 18.027 16.974 1.00 14.90 ? 3 DT A "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? 20.212 18.618 15.274 1.00 15.09 ? 3 DT A "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? 21.562 18.243 15.259 1.00 16.03 ? 3 DT A "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? 19.290 17.537 14.770 1.00 15.11 ? 3 DT A "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? 18.484 17.066 15.928 1.00 13.86 ? 3 DT A "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? 17.038 17.041 15.577 1.00 12.72 ? 3 DT A N1 1
ATOM 51 C C2 . DT A 1 3 ? 16.520 15.767 15.402 1.00 11.62 ? 3 DT A C2 1
ATOM 52 O O2 . DT A 1 3 ? 17.271 14.826 15.535 1.00 12.70 ? 3 DT A O2 1
ATOM 53 N N3 . DT A 1 3 ? 15.209 15.599 15.168 1.00 11.07 ? 3 DT A N3 1
ATOM 54 C C4 . DT A 1 3 ? 14.364 16.694 15.057 1.00 10.70 ? 3 DT A C4 1
ATOM 55 O O4 . DT A 1 3 ? 13.187 16.391 14.860 1.00 11.36 ? 3 DT A O4 1
ATOM 56 C C5 . DT A 1 3 ? 14.893 17.991 15.174 1.00 11.40 ? 3 DT A C5 1
ATOM 57 C C7 . DT A 1 3 ? 13.983 19.195 15.057 1.00 11.51 ? 3 DT A C7 1
ATOM 58 C C6 . DT A 1 3 ? 16.212 18.134 15.439 1.00 12.05 ? 3 DT A C6 1
ATOM 59 P P . DA A 1 4 ? 22.486 18.114 13.888 1.00 21.87 ? 4 DA A P 1
ATOM 60 O OP1 . DA A 1 4 ? 23.820 17.854 14.478 1.00 17.46 ? 4 DA A OP1 1
ATOM 61 O OP2 . DA A 1 4 ? 21.638 18.932 13.017 1.00 17.55 ? 4 DA A OP2 1
ATOM 62 O "O5'" . DA A 1 4 ? 21.862 16.677 13.394 1.00 15.13 ? 4 DA A "O5'" 1
ATOM 63 C "C5'" . DA A 1 4 ? 22.450 15.473 13.825 1.00 14.84 ? 4 DA A "C5'" 1
ATOM 64 C "C4'" . DA A 1 4 ? 21.845 14.364 13.012 1.00 14.61 ? 4 DA A "C4'" 1
ATOM 65 O "O4'" . DA A 1 4 ? 20.473 14.240 13.023 1.00 14.31 ? 4 DA A "O4'" 1
ATOM 66 C "C3'" . DA A 1 4 ? 22.276 14.554 11.509 1.00 14.65 ? 4 DA A "C3'" 1
ATOM 67 O "O3'" . DA A 1 4 ? 22.923 13.324 11.217 1.00 16.31 ? 4 DA A "O3'" 1
ATOM 68 C "C2'" . DA A 1 4 ? 21.016 14.789 10.803 1.00 14.62 ? 4 DA A "C2'" 1
ATOM 69 C "C1'" . DA A 1 4 ? 19.963 14.190 11.642 1.00 12.94 ? 4 DA A "C1'" 1
ATOM 70 N N9 . DA A 1 4 ? 18.702 14.910 11.652 1.00 12.04 ? 4 DA A N9 1
ATOM 71 C C8 . DA A 1 4 ? 18.481 16.265 11.817 1.00 11.42 ? 4 DA A C8 1
ATOM 72 N N7 . DA A 1 4 ? 17.277 16.624 11.806 1.00 11.09 ? 4 DA A N7 1
ATOM 73 C C5 . DA A 1 4 ? 16.576 15.417 11.764 1.00 10.76 ? 4 DA A C5 1
ATOM 74 C C6 . DA A 1 4 ? 15.181 15.159 11.716 1.00 10.19 ? 4 DA A C6 1
ATOM 75 N N6 . DA A 1 4 ? 14.263 16.086 11.785 1.00 10.34 ? 4 DA A N6 1
ATOM 76 N N1 . DA A 1 4 ? 14.873 13.876 11.636 1.00 9.91 ? 4 DA A N1 1
ATOM 77 C C2 . DA A 1 4 ? 15.784 12.885 11.578 1.00 10.41 ? 4 DA A C2 1
ATOM 78 N N3 . DA A 1 4 ? 17.165 13.036 11.583 1.00 11.55 ? 4 DA A N3 1
ATOM 79 C C4 . DA A 1 4 ? 17.436 14.364 11.684 1.00 11.00 ? 4 DA A C4 1
ATOM 80 P P . DC A 1 5 ? 23.635 12.829 9.841 1.00 19.93 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 24.520 11.655 10.011 1.00 19.58 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 24.229 14.092 9.464 1.00 20.27 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 22.419 12.568 8.726 1.00 16.92 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 21.741 11.299 8.933 1.00 16.11 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 20.599 11.299 7.945 1.00 15.20 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 19.554 12.106 8.508 1.00 14.51 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 20.932 11.899 6.575 1.00 15.37 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 20.394 11.120 5.502 1.00 15.40 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 20.304 13.296 6.633 1.00 14.69 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 19.086 12.938 7.489 1.00 14.17 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 18.335 14.111 7.903 1.00 13.34 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 16.971 13.941 8.136 1.00 12.34 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 16.534 12.775 8.163 1.00 12.82 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 16.207 15.027 8.365 1.00 12.53 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 16.784 16.274 8.397 1.00 12.49 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 16.019 17.363 8.588 1.00 11.84 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 18.164 16.453 8.174 1.00 12.82 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 18.910 15.363 7.940 1.00 13.02 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 21.153 9.888 4.769 1.00 17.70 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 21.764 8.902 5.539 1.00 21.19 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 21.817 10.854 3.776 1.00 18.75 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 19.876 9.190 3.909 1.00 15.84 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 19.092 8.148 4.461 1.00 14.10 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 18.041 7.728 3.489 1.00 13.70 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 17.232 8.815 3.123 1.00 13.30 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 18.607 7.145 2.162 1.00 13.32 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 17.767 6.106 1.737 1.00 14.89 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 18.688 8.423 1.365 1.00 12.96 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 17.400 9.078 1.662 1.00 11.79 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 17.428 10.540 1.620 1.00 10.02 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 18.478 11.336 1.609 1.00 9.77 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 18.229 12.602 1.662 1.00 10.09 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 16.812 12.616 1.583 1.00 9.64 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 15.876 13.702 1.567 1.00 8.67 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 16.249 14.901 1.546 1.00 10.50 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 14.588 13.361 1.524 1.00 8.97 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.170 12.047 1.535 1.00 7.86 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 12.873 11.767 1.508 1.00 8.72 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 15.016 10.986 1.588 1.00 8.78 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 16.299 11.375 1.551 1.00 9.22 ? 6 DG A C4 1
HETATM 121 C C1 . MAR B 2 . ? 15.226 18.271 5.056 1.00 12.99 ? 7 MAR A C1 1
HETATM 122 C C2 . MAR B 2 . ? 16.361 19.069 5.088 1.00 13.61 ? 7 MAR A C2 1
HETATM 123 C C3 . MAR B 2 . ? 17.691 18.495 5.024 1.00 14.00 ? 7 MAR A C3 1
HETATM 124 C C4 . MAR B 2 . ? 17.784 17.066 4.955 1.00 12.79 ? 7 MAR A C4 1
HETATM 125 O O4 . MAR B 2 . ? 18.907 16.386 4.939 1.00 13.93 ? 7 MAR A O4 1
HETATM 126 C C5 . MAR B 2 . ? 16.543 16.338 4.950 1.00 12.73 ? 7 MAR A C5 1
HETATM 127 C C6 . MAR B 2 . ? 16.624 14.837 4.875 1.00 11.69 ? 7 MAR A C6 1
HETATM 128 O O6 . MAR B 2 . ? 17.658 14.123 4.801 1.00 13.13 ? 7 MAR A O6 1
HETATM 129 C C7 . MAR B 2 . ? 15.338 14.114 4.923 1.00 11.01 ? 7 MAR A C7 1
HETATM 130 C C8 . MAR B 2 . ? 15.355 12.745 4.854 1.00 10.33 ? 7 MAR A C8 1
HETATM 131 O O8 . MAR B 2 . ? 16.442 12.027 4.849 1.00 10.44 ? 7 MAR A O8 1
HETATM 132 C C9 . MAR B 2 . ? 14.139 12.036 4.897 1.00 11.49 ? 7 MAR A C9 1
HETATM 133 C C10 . MAR B 2 . ? 14.198 10.490 4.902 1.00 13.09 ? 7 MAR A C10 1
HETATM 134 O O10 . MAR B 2 . ? 14.817 10.243 6.251 1.00 15.53 ? 7 MAR A O10 1
HETATM 135 C C11 . MAR B 2 . ? 12.871 9.804 4.780 1.00 13.11 ? 7 MAR A C11 1
HETATM 136 C C12 . MAR B 2 . ? 11.691 10.551 5.359 1.00 13.76 ? 7 MAR A C12 1
HETATM 137 O O12 . MAR B 2 . ? 11.717 10.624 6.851 1.00 13.04 ? 7 MAR A O12 1
HETATM 138 C C13 . MAR B 2 . ? 10.414 9.775 5.114 1.00 14.22 ? 7 MAR A C13 1
HETATM 139 O O13 . MAR B 2 . ? 9.731 10.224 4.185 1.00 16.46 ? 7 MAR A O13 1
HETATM 140 C C14 . MAR B 2 . ? 9.820 8.790 6.102 1.00 15.27 ? 7 MAR A C14 1
HETATM 141 C C15 . MAR B 2 . ? 11.565 12.025 4.881 1.00 12.46 ? 7 MAR A C15 1
HETATM 142 C C16 . MAR B 2 . ? 12.879 12.638 4.865 1.00 10.71 ? 7 MAR A C16 1
HETATM 143 C C17 . MAR B 2 . ? 12.910 14.030 4.923 1.00 10.50 ? 7 MAR A C17 1
HETATM 144 O O17 . MAR B 2 . ? 11.691 14.688 4.913 1.00 11.26 ? 7 MAR A O17 1
HETATM 145 C C18 . MAR B 2 . ? 14.025 14.828 4.945 1.00 10.67 ? 7 MAR A C18 1
HETATM 146 C C19 . MAR B 2 . ? 14.022 16.265 4.982 1.00 11.40 ? 7 MAR A C19 1
HETATM 147 O O19 . MAR B 2 . ? 12.994 17.010 4.976 1.00 12.44 ? 7 MAR A O19 1
HETATM 148 C C20 . MAR B 2 . ? 15.316 16.915 5.008 1.00 11.92 ? 7 MAR A C20 1
HETATM 149 C C21 . MAR B 2 . ? 20.206 17.201 5.162 1.00 14.07 ? 7 MAR A C21 1
HETATM 150 C "C1'" . MAR B 2 . ? 15.697 9.184 6.379 1.00 18.13 ? 7 MAR A "C1'" 1
HETATM 151 C "C2'" . MAR B 2 . ? 16.747 9.481 7.419 1.00 19.28 ? 7 MAR A "C2'" 1
HETATM 152 C "C3'" . MAR B 2 . ? 16.025 9.672 8.806 1.00 21.07 ? 7 MAR A "C3'" 1
HETATM 153 N "N3'" . MAR B 2 . ? 17.190 9.997 9.756 1.00 20.00 ? 7 MAR A "N3'" 1
HETATM 154 C "C4'" . MAR B 2 . ? 15.221 8.459 9.151 1.00 21.73 ? 7 MAR A "C4'" 1
HETATM 155 O "O4'" . MAR B 2 . ? 16.033 7.238 9.321 1.00 24.67 ? 7 MAR A "O4'" 1
HETATM 156 C "C5'" . MAR B 2 . ? 14.170 8.210 8.067 1.00 21.43 ? 7 MAR A "C5'" 1
HETATM 157 O "O5'" . MAR B 2 . ? 14.915 7.974 6.761 1.00 19.90 ? 7 MAR A "O5'" 1
HETATM 158 C "C6'" . MAR B 2 . ? 13.344 6.890 8.174 1.00 21.48 ? 7 MAR A "C6'" 1
HETATM 159 C CB1 . MAR B 2 . ? 15.568 6.378 10.394 1.00 26.93 ? 7 MAR A CB1 1
HETATM 160 C CB2 . MAR B 2 . ? 15.257 4.986 9.894 1.00 27.97 ? 7 MAR A CB2 1
HETATM 161 C CB3 . MAR B 2 . ? 16.610 4.406 9.331 1.00 28.72 ? 7 MAR A CB3 1
HETATM 162 O OB3 . MAR B 2 . ? 16.243 3.171 8.588 1.00 29.58 ? 7 MAR A OB3 1
HETATM 163 C CB4 . MAR B 2 . ? 17.523 4.193 10.574 1.00 28.84 ? 7 MAR A CB4 1
HETATM 164 O OB4 . MAR B 2 . ? 18.747 3.591 9.910 1.00 29.21 ? 7 MAR A OB4 1
HETATM 165 C CB5 . MAR B 2 . ? 17.826 5.563 11.185 1.00 28.53 ? 7 MAR A CB5 1
HETATM 166 O OB5 . MAR B 2 . ? 16.523 6.294 11.509 1.00 27.99 ? 7 MAR A OB5 1
HETATM 167 C CB6 . MAR B 2 . ? 18.498 5.571 12.566 1.00 28.91 ? 7 MAR A CB6 1
HETATM 168 MG MG . MG C 3 . ? 19.683 14.775 2.560 1.00 28.07 ? 8 MG A MG 1
HETATM 169 O O . HOH D 4 . ? 17.926 16.876 1.168 1.00 27.66 ? 9 HOH A O 1
HETATM 170 O O . HOH D 4 . ? 22.282 13.484 3.149 1.00 33.88 ? 10 HOH A O 1
HETATM 171 O O . HOH D 4 . ? 21.288 16.492 0.945 1.00 37.84 ? 11 HOH A O 1
HETATM 172 O O . HOH D 4 . ? 16.772 19.215 12.088 1.00 34.80 ? 12 HOH A O 1
HETATM 173 O O . HOH D 4 . ? 10.518 17.638 12.008 1.00 41.48 ? 13 HOH A O 1
HETATM 174 O O . HOH D 4 . ? 19.601 19.884 8.344 1.00 45.42 ? 14 HOH A O 1
HETATM 175 O O . HOH D 4 . ? 22.425 15.658 7.388 1.00 25.05 ? 15 HOH A O 1
HETATM 176 O O . HOH D 4 . ? 9.809 5.501 7.456 1.00 33.42 ? 16 HOH A O 1
HETATM 177 O O . HOH D 4 . ? 11.383 19.134 5.412 1.00 47.75 ? 17 HOH A O 1
HETATM 178 O O . HOH D 4 . ? 20.949 23.794 15.593 1.00 36.64 ? 18 HOH A O 1
HETATM 179 O O . HOH D 4 . ? 9.070 11.991 1.652 1.00 27.06 ? 19 HOH A O 1
HETATM 180 O O . HOH D 4 . ? 11.537 9.367 1.046 1.00 36.80 ? 20 HOH A O 1
HETATM 181 O O . HOH D 4 . ? 14.226 8.428 1.561 1.00 24.31 ? 21 HOH A O 1
HETATM 182 O O . HOH D 4 . ? 26.030 16.593 12.964 1.00 46.92 ? 22 HOH A O 1
HETATM 183 O O . HOH D 4 . ? 16.954 19.943 8.816 1.00 46.09 ? 23 HOH A O 1
HETATM 184 O O . HOH D 4 . ? 16.887 24.248 7.127 1.00 33.63 ? 24 HOH A O 1
HETATM 185 O O . HOH D 4 . ? 23.719 14.666 5.030 1.00 45.85 ? 25 HOH A O 1
HETATM 186 O O . HOH D 4 . ? 14.736 -3.266 0.473 1.00 49.56 ? 26 HOH A O 1
HETATM 187 O O . HOH D 4 . ? 20.187 14.666 -1.275 1.00 43.23 ? 27 HOH A O 1
HETATM 188 O O . HOH D 4 . ? 21.912 12.610 0.080 1.00 54.19 ? 28 HOH A O 1
HETATM 189 O O . HOH D 4 . ? 17.321 21.246 13.575 1.00 35.22 ? 29 HOH A O 1
HETATM 190 O O . HOH D 4 . ? 16.341 9.481 12.412 1.00 28.46 ? 30 HOH A O 1
HETATM 191 O O . HOH D 4 . ? 21.400 18.414 9.400 1.00 39.47 ? 31 HOH A O 1
HETATM 192 O O . HOH D 4 . ? 11.106 24.587 8.126 1.00 45.59 ? 32 HOH A O 1
HETATM 193 O O . HOH D 4 . ? 5.860 8.515 6.490 1.00 41.20 ? 33 HOH A O 1
HETATM 194 O O . HOH D 4 . ? 22.806 10.008 0.908 1.00 44.41 ? 34 HOH A O 1
HETATM 195 O O . HOH D 4 . ? 19.952 21.184 12.561 1.00 43.55 ? 35 HOH A O 1
HETATM 196 O O . HOH D 4 . ? 7.089 17.512 11.153 1.00 49.31 ? 36 HOH A O 1
HETATM 197 O O . HOH D 4 . ? 14.417 6.428 3.484 1.00 45.45 ? 37 HOH A O 1
HETATM 198 O O . HOH D 4 . ? 24.027 15.683 8.428 1.00 51.19 ? 38 HOH A O 1
HETATM 199 O O . HOH D 4 . ? 24.279 17.747 9.900 1.00 42.42 ? 39 HOH A O 1
HETATM 200 O O . HOH D 4 . ? 12.336 19.246 11.270 1.00 37.15 ? 40 HOH A O 1
HETATM 201 O O . HOH D 4 . ? 16.114 5.753 6.017 1.00 41.27 ? 41 HOH A O 1
HETATM 202 O O . HOH D 4 . ? 22.349 19.352 6.352 1.00 43.45 ? 42 HOH A O 1
HETATM 203 O O . HOH D 4 . ? 13.229 3.274 5.591 1.00 46.72 ? 43 HOH A O 1
HETATM 204 O O . HOH D 4 . ? 11.837 0.213 1.121 1.00 52.87 ? 44 HOH A O 1
HETATM 205 O O . HOH D 4 . ? 14.139 25.441 11.764 1.00 50.49 ? 45 HOH A O 1
HETATM 206 O O . HOH D 4 . ? 10.885 21.615 10.117 1.00 48.66 ? 46 HOH A O 1
HETATM 207 O O . HOH D 4 . ? 13.739 23.324 9.124 1.00 51.09 ? 47 HOH A O 1
HETATM 208 O O . HOH D 4 . ? 11.540 25.929 4.377 1.00 53.22 ? 48 HOH A O 1
HETATM 209 O O . HOH D 4 . ? 9.672 18.484 9.565 1.00 58.28 ? 49 HOH A O 1
HETATM 210 O O . HOH D 4 . ? 14.294 0.064 7.754 1.00 62.61 ? 50 HOH A O 1
HETATM 211 O O . HOH D 4 . ? 6.820 5.260 6.877 1.00 53.49 ? 51 HOH A O 1
HETATM 212 O O . HOH D 4 . ? 14.974 26.013 6.203 1.00 64.59 ? 52 HOH A O 1
HETATM 213 O O . HOH D 4 . ? 7.008 8.047 3.681 1.00 53.20 ? 53 HOH A O 1
HETATM 214 O O . HOH D 4 . ? 8.815 5.666 3.303 1.00 55.71 ? 54 HOH A O 1
HETATM 215 O O . HOH D 4 . ? 11.635 3.375 2.289 1.00 49.21 ? 55 HOH A O 1
HETATM 216 O O . HOH D 4 . ? 6.137 12.476 0.887 1.00 48.23 ? 56 HOH A O 1
HETATM 217 O O . HOH D 4 . ? 10.633 5.613 0.637 1.00 43.93 ? 57 HOH A O 1
HETATM 218 O O . HOH D 4 . ? 9.339 22.027 12.481 1.00 57.01 ? 58 HOH A O 1
HETATM 219 O O . HOH D 4 . ? 13.857 20.979 12.162 1.00 59.02 ? 59 HOH A O 1
HETATM 220 O O . HOH D 4 . ? 8.512 19.607 12.051 1.00 49.76 ? 60 HOH A O 1
HETATM 221 O O . HOH D 4 . ? 24.089 9.098 11.312 1.00 51.69 ? 61 HOH A O 1
HETATM 222 O O . HOH D 4 . ? 13.652 2.678 10.325 1.00 60.04 ? 62 HOH A O 1
HETATM 223 O O . HOH D 4 . ? 24.624 12.260 3.128 1.00 57.29 ? 63 HOH A O 1
HETATM 224 O O . HOH D 4 . ? 11.025 21.853 18.976 1.00 39.71 ? 64 HOH A O 1
HETATM 225 O O . HOH D 4 . ? 13.330 24.391 18.928 1.00 50.48 ? 65 HOH A O 1
HETATM 226 O O . HOH D 4 . ? 23.063 7.425 8.673 1.00 51.04 ? 66 HOH A O 1
HETATM 227 O O . HOH D 4 . ? 20.397 7.476 8.247 1.00 50.95 ? 67 HOH A O 1
HETATM 228 O O . HOH D 4 . ? 29.128 13.666 -4.418 1.00 62.28 ? 68 HOH A O 1
HETATM 229 O O . HOH D 4 . ? 15.613 1.196 2.555 1.00 59.59 ? 69 HOH A O 1
HETATM 230 O O . HOH D 4 . ? 27.444 15.711 0.223 1.00 61.55 ? 70 HOH A O 1
HETATM 231 O O . HOH D 4 . ? 21.019 6.389 11.233 1.00 55.81 ? 71 HOH A O 1
HETATM 232 O O . HOH D 4 . ? 10.417 20.094 7.738 1.00 49.53 ? 72 HOH A O 1
HETATM 233 O O . HOH D 4 . ? 12.274 22.786 5.587 1.00 54.79 ? 73 HOH A O 1
HETATM 234 O O . HOH D 4 . ? 11.123 6.680 4.121 1.00 52.39 ? 74 HOH A O 1
HETATM 235 O O . HOH D 4 . ? 10.862 3.339 9.650 1.00 47.15 ? 75 HOH A O 1
HETATM 236 O O . HOH D 4 . ? 11.610 27.514 11.811 1.00 54.69 ? 76 HOH A O 1
#