data_1D17
#
_entry.id 1D17
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1D17 pdb_00001d17 10.2210/pdb1d17/pdb
RCSB DDFA16 ? ?
WWPDB D_1000172622 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1991-07-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2011-08-24
5 'Structure model' 1 4 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Derived calculations'
5 5 'Structure model' 'Data collection'
6 5 'Structure model' 'Database references'
7 5 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' chem_comp_atom
2 5 'Structure model' chem_comp_bond
3 5 'Structure model' database_2
4 5 'Structure model' struct_conn
5 5 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_database_2.pdbx_DOI'
2 5 'Structure model' '_database_2.pdbx_database_accession'
3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
4 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
5 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
6 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1D17
_pdbx_database_status.recvd_initial_deposition_date 1990-08-08
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Egli, M.' 1
'Williams, L.D.' 2
'Frederick, C.A.' 3
'Rich, A.' 4
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'DNA-nogalamycin interactions.' Biochemistry 30 1364 1372 1991 BICHAW US 0006-2960 0033 ?
1991116 10.1021/bi00219a029
1 'Structure of Nogalamycin Bound to a DNA Hexamer' Proc.Natl.Acad.Sci.USA 87 2225 2229 1990 PNASA6 US 0027-8424 0040 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Egli, M.' 1 ?
primary 'Williams, L.D.' 2 ?
primary 'Frederick, C.A.' 3 ?
primary 'Rich, A.' 4 ?
1 'Williams, L.D.' 5 ?
1 'Egli, M.' 6 ?
1 'Gao, Q.' 7 ?
1 'Bash, P.' 8 ?
1 'Van Der Marel, G.A.' 9 ?
1 'Van Boom, J.H.' 10 ?
1 'Rich, A.' 11 ?
1 'Frederick, C.A.' 12 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*(5CM)P*GP*TP*AP*(5CM)P*G)-3')
;
1837.271 1 ? ? ? ?
2 non-polymer syn NOGALAMYCIN 787.803 1 ? ? ? ?
3 water nat water 18.015 39 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(5CM)(DG)(DT)(DA)(5CM)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 NOGALAMYCIN NGM
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 5CM n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 5CM n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
NGM non-polymer . NOGALAMYCIN ? 'C39 H49 N O16' 787.803
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 5CM 1 1 1 5CM 5CM A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DT 3 3 3 DT DT A . n
A 1 4 DA 4 4 4 DA DA A . n
A 1 5 5CM 5 5 5 5CM 5CM A . n
A 1 6 DG 6 6 6 DG DG A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NGM 1 7 7 NGM NGM A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
C 3 HOH 34 41 41 HOH HOH A .
C 3 HOH 35 42 42 HOH HOH A .
C 3 HOH 36 43 43 HOH HOH A .
C 3 HOH 37 44 44 HOH HOH A .
C 3 HOH 38 45 45 HOH HOH A .
C 3 HOH 39 46 46 HOH HOH A .
#
_software.name X-PLOR
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1D17
_cell.length_a 26.300
_cell.length_b 26.300
_cell.length_c 100.010
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1D17
_symmetry.space_group_name_H-M 'P 61 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 178
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1D17
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 54.73
_exptl_crystal.density_Matthews 2.72
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 METHANOL ? ? ?
1 4 1 'NA CACODYLATE' ? ? ?
1 5 1 MGCL2 ? ? ?
1 6 1 SPERMINE ? ? ?
1 7 2 WATER ? ? ?
1 8 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 300.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type RIGAKU
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_refine.entry_id 1D17
_refine.ls_number_reflns_obs 809
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 2.000
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.206
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.206
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_overall_phase_error ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 122
_refine_hist.pdbx_number_atoms_ligand 56
_refine_hist.number_atoms_solvent 39
_refine_hist.number_atoms_total 217
_refine_hist.d_res_high 2.000
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1D17
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1D17
_struct.title 'DNA-NOGALAMYCIN INTERACTIONS'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1D17
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1D17
_struct_ref.pdbx_db_accession 1D17
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1D17
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1D17
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 26.3000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 50.0050000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A 5CM 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A 5CM 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.656 ? ?
covale2 covale both ? A DA 4 "O3'" ? ? ? 1_555 A 5CM 5 P ? ? A DA 4 A 5CM 5 1_555 ? ? ? ? ? ? ? 1.620 ? ?
covale3 covale both ? A 5CM 5 "O3'" ? ? ? 1_555 A DG 6 P ? ? A 5CM 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.643 ? ?
hydrog1 hydrog ? ? A 5CM 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A 5CM 1 A DG 6 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A 5CM 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A 5CM 1 A DG 6 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A 5CM 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A 5CM 1 A DG 6 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A 5CM 5 N3 ? ? A DG 2 A 5CM 5 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A 5CM 5 O2 ? ? A DG 2 A 5CM 5 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A 5CM 5 N4 ? ? A DG 2 A 5CM 5 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 3 A DA 4 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 3 A DA 4 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 4 A DT 3 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 4 A DT 3 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A 5CM 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A 5CM 5 A DG 2 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A 5CM 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A 5CM 5 A DG 2 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A 5CM 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A 5CM 5 A DG 2 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A 5CM 1 N3 ? ? A DG 6 A 5CM 1 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A 5CM 1 O2 ? ? A DG 6 A 5CM 1 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A 5CM 1 N4 ? ? A DG 6 A 5CM 1 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A NGM 7 ? 14 'BINDING SITE FOR RESIDUE NGM A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 14 5CM A 1 ? 5CM A 1 . ? 1_555 ?
2 AC1 14 DG A 2 ? DG A 2 . ? 1_555 ?
3 AC1 14 DG A 2 ? DG A 2 . ? 9_655 ?
4 AC1 14 DT A 3 ? DT A 3 . ? 1_555 ?
5 AC1 14 DT A 3 ? DT A 3 . ? 5_564 ?
6 AC1 14 DA A 4 ? DA A 4 . ? 1_555 ?
7 AC1 14 5CM A 5 ? 5CM A 5 . ? 11_655 ?
8 AC1 14 DG A 6 ? DG A 6 . ? 11_655 ?
9 AC1 14 HOH C . ? HOH A 35 . ? 1_555 ?
10 AC1 14 HOH C . ? HOH A 38 . ? 5_564 ?
11 AC1 14 HOH C . ? HOH A 41 . ? 1_555 ?
12 AC1 14 HOH C . ? HOH A 42 . ? 1_555 ?
13 AC1 14 HOH C . ? HOH A 44 . ? 1_555 ?
14 AC1 14 HOH C . ? HOH A 46 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.550 1.496 0.054 0.006 N
2 1 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.337 1.374 -0.037 0.006 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C3'" A 5CM 1 ? ? "O3'" A 5CM 1 ? ? P A DG 2 ? ? 128.67 119.70 8.97 1.20 Y
2 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? "O4'" A DG 2 ? ? 116.43 109.80 6.63 1.10 N
3 1 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 100.87 110.10 -9.23 1.00 N
4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.39 105.90 -5.51 0.80 N
5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.38 108.30 7.08 0.30 N
6 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 115.94 108.30 7.64 0.30 N
7 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 103.74 108.00 -4.26 0.70 N
8 1 C5 A DA 4 ? ? N7 A DA 4 ? ? C8 A DA 4 ? ? 100.65 103.90 -3.25 0.50 N
9 1 N7 A DA 4 ? ? C8 A DA 4 ? ? N9 A DA 4 ? ? 117.60 113.80 3.80 0.50 N
10 1 C8 A DA 4 ? ? N9 A DA 4 ? ? C4 A DA 4 ? ? 103.31 105.80 -2.49 0.40 N
11 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.31 108.30 4.01 0.30 N
12 1 C8 A DG 6 ? ? N9 A DG 6 ? ? C4 A DG 6 ? ? 103.92 106.40 -2.48 0.40 N
13 1 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 108.00 105.40 2.60 0.40 N
14 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 115.56 119.90 -4.34 0.60 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DT A 3 ? ? 0.133 'SIDE CHAIN'
2 1 DA A 4 ? ? 0.055 'SIDE CHAIN'
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A 5CM 1 A 5CM 1 ? DC ?
2 A 5CM 5 A 5CM 5 ? DC ?
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
5CM N1 N N N 1
5CM C2 C N N 2
5CM N3 N N N 3
5CM C4 C N N 4
5CM C5 C N N 5
5CM C5A C N N 6
5CM C6 C N N 7
5CM O2 O N N 8
5CM N4 N N N 9
5CM "C1'" C N R 10
5CM "C2'" C N N 11
5CM "C3'" C N S 12
5CM "C4'" C N R 13
5CM "O4'" O N N 14
5CM "O3'" O N N 15
5CM "C5'" C N N 16
5CM "O5'" O N N 17
5CM P P N N 18
5CM OP1 O N N 19
5CM OP2 O N N 20
5CM OP3 O N N 21
5CM H5A1 H N N 22
5CM H5A2 H N N 23
5CM H5A3 H N N 24
5CM H6 H N N 25
5CM HN41 H N N 26
5CM HN42 H N N 27
5CM "H1'" H N N 28
5CM "H2'" H N N 29
5CM "H2''" H N N 30
5CM "H3'" H N N 31
5CM "H4'" H N N 32
5CM "HO3'" H N N 33
5CM "H5'" H N N 34
5CM "H5''" H N N 35
5CM HOP2 H N N 36
5CM HOP3 H N N 37
DA OP3 O N N 38
DA P P N N 39
DA OP1 O N N 40
DA OP2 O N N 41
DA "O5'" O N N 42
DA "C5'" C N N 43
DA "C4'" C N R 44
DA "O4'" O N N 45
DA "C3'" C N S 46
DA "O3'" O N N 47
DA "C2'" C N N 48
DA "C1'" C N R 49
DA N9 N Y N 50
DA C8 C Y N 51
DA N7 N Y N 52
DA C5 C Y N 53
DA C6 C Y N 54
DA N6 N N N 55
DA N1 N Y N 56
DA C2 C Y N 57
DA N3 N Y N 58
DA C4 C Y N 59
DA HOP3 H N N 60
DA HOP2 H N N 61
DA "H5'" H N N 62
DA "H5''" H N N 63
DA "H4'" H N N 64
DA "H3'" H N N 65
DA "HO3'" H N N 66
DA "H2'" H N N 67
DA "H2''" H N N 68
DA "H1'" H N N 69
DA H8 H N N 70
DA H61 H N N 71
DA H62 H N N 72
DA H2 H N N 73
DG OP3 O N N 74
DG P P N N 75
DG OP1 O N N 76
DG OP2 O N N 77
DG "O5'" O N N 78
DG "C5'" C N N 79
DG "C4'" C N R 80
DG "O4'" O N N 81
DG "C3'" C N S 82
DG "O3'" O N N 83
DG "C2'" C N N 84
DG "C1'" C N R 85
DG N9 N Y N 86
DG C8 C Y N 87
DG N7 N Y N 88
DG C5 C Y N 89
DG C6 C N N 90
DG O6 O N N 91
DG N1 N N N 92
DG C2 C N N 93
DG N2 N N N 94
DG N3 N N N 95
DG C4 C Y N 96
DG HOP3 H N N 97
DG HOP2 H N N 98
DG "H5'" H N N 99
DG "H5''" H N N 100
DG "H4'" H N N 101
DG "H3'" H N N 102
DG "HO3'" H N N 103
DG "H2'" H N N 104
DG "H2''" H N N 105
DG "H1'" H N N 106
DG H8 H N N 107
DG H1 H N N 108
DG H21 H N N 109
DG H22 H N N 110
DT OP3 O N N 111
DT P P N N 112
DT OP1 O N N 113
DT OP2 O N N 114
DT "O5'" O N N 115
DT "C5'" C N N 116
DT "C4'" C N R 117
DT "O4'" O N N 118
DT "C3'" C N S 119
DT "O3'" O N N 120
DT "C2'" C N N 121
DT "C1'" C N R 122
DT N1 N N N 123
DT C2 C N N 124
DT O2 O N N 125
DT N3 N N N 126
DT C4 C N N 127
DT O4 O N N 128
DT C5 C N N 129
DT C7 C N N 130
DT C6 C N N 131
DT HOP3 H N N 132
DT HOP2 H N N 133
DT "H5'" H N N 134
DT "H5''" H N N 135
DT "H4'" H N N 136
DT "H3'" H N N 137
DT "HO3'" H N N 138
DT "H2'" H N N 139
DT "H2''" H N N 140
DT "H1'" H N N 141
DT H3 H N N 142
DT H71 H N N 143
DT H72 H N N 144
DT H73 H N N 145
DT H6 H N N 146
HOH O O N N 147
HOH H1 H N N 148
HOH H2 H N N 149
NGM C1 C Y N 150
NGM C2 C Y N 151
NGM C3 C Y N 152
NGM C4 C Y N 153
NGM C5 C N N 154
NGM C6 C Y N 155
NGM C7 C N S 156
NGM C8 C N N 157
NGM C9 C N S 158
NGM C10 C N R 159
NGM C11 C Y N 160
NGM C12 C N N 161
NGM C13 C N N 162
NGM C14 C N N 163
NGM C15 C N N 164
NGM C16 C Y N 165
NGM C17 C Y N 166
NGM C18 C Y N 167
NGM C19 C Y N 168
NGM C20 C Y N 169
NGM C21 C Y N 170
NGM C22 C N N 171
NGM C23 C N N 172
NGM C24 C N N 173
NGM C25 C N N 174
NGM C26 C N N 175
NGM C27 C N N 176
NGM C28 C N N 177
NGM C29 C N N 178
NGM C30 C N S 179
NGM C31 C N S 180
NGM C32 C N R 181
NGM C33 C N R 182
NGM C34 C N R 183
NGM "C1'" C N R 184
NGM "C2'" C N R 185
NGM "C3'" C N R 186
NGM "C4'" C N S 187
NGM "C5'" C N S 188
NGM N1 N N N 189
NGM O1 O N N 190
NGM O2 O N N 191
NGM O4 O N N 192
NGM O5 O N N 193
NGM O6 O N N 194
NGM O7 O N N 195
NGM O9 O N N 196
NGM O10 O N N 197
NGM O14 O N N 198
NGM O12 O N N 199
NGM O15 O N N 200
NGM O16 O N N 201
NGM "O1'" O N N 202
NGM "O2'" O N N 203
NGM "O3'" O N N 204
NGM "O4'" O N N 205
NGM H3 H N N 206
NGM H7 H N N 207
NGM H81 H N N 208
NGM H82 H N N 209
NGM H10 H N N 210
NGM H11 H N N 211
NGM H131 H N N 212
NGM H132 H N N 213
NGM H133 H N N 214
NGM H151 H N N 215
NGM H152 H N N 216
NGM H153 H N N 217
NGM H221 H N N 218
NGM H222 H N N 219
NGM H223 H N N 220
NGM H231 H N N 221
NGM H232 H N N 222
NGM H233 H N N 223
NGM H241 H N N 224
NGM H242 H N N 225
NGM H243 H N N 226
NGM H251 H N N 227
NGM H252 H N N 228
NGM H253 H N N 229
NGM H261 H N N 230
NGM H262 H N N 231
NGM H263 H N N 232
NGM H271 H N N 233
NGM H272 H N N 234
NGM H273 H N N 235
NGM H281 H N N 236
NGM H282 H N N 237
NGM H283 H N N 238
NGM H291 H N N 239
NGM H292 H N N 240
NGM H293 H N N 241
NGM H30 H N N 242
NGM H31 H N N 243
NGM H32 H N N 244
NGM H33 H N N 245
NGM "H1'" H N N 246
NGM "H2'" H N N 247
NGM "H4'" H N N 248
NGM "H5'" H N N 249
NGM HO4 H N N 250
NGM HO6 H N N 251
NGM HO9 H N N 252
NGM H15 H N N 253
NGM H16 H N N 254
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CM N1 C2 sing N N 1
5CM N1 C6 sing N N 2
5CM N1 "C1'" sing N N 3
5CM C2 N3 sing N N 4
5CM C2 O2 doub N N 5
5CM N3 C4 doub N N 6
5CM C4 C5 sing N N 7
5CM C4 N4 sing N N 8
5CM C5 C5A sing N N 9
5CM C5 C6 doub N N 10
5CM C5A H5A1 sing N N 11
5CM C5A H5A2 sing N N 12
5CM C5A H5A3 sing N N 13
5CM C6 H6 sing N N 14
5CM N4 HN41 sing N N 15
5CM N4 HN42 sing N N 16
5CM "C1'" "C2'" sing N N 17
5CM "C1'" "O4'" sing N N 18
5CM "C1'" "H1'" sing N N 19
5CM "C2'" "C3'" sing N N 20
5CM "C2'" "H2'" sing N N 21
5CM "C2'" "H2''" sing N N 22
5CM "C3'" "C4'" sing N N 23
5CM "C3'" "O3'" sing N N 24
5CM "C3'" "H3'" sing N N 25
5CM "C4'" "O4'" sing N N 26
5CM "C4'" "C5'" sing N N 27
5CM "C4'" "H4'" sing N N 28
5CM "O3'" "HO3'" sing N N 29
5CM "C5'" "O5'" sing N N 30
5CM "C5'" "H5'" sing N N 31
5CM "C5'" "H5''" sing N N 32
5CM "O5'" P sing N N 33
5CM P OP1 doub N N 34
5CM P OP2 sing N N 35
5CM P OP3 sing N N 36
5CM OP2 HOP2 sing N N 37
5CM OP3 HOP3 sing N N 38
DA OP3 P sing N N 39
DA OP3 HOP3 sing N N 40
DA P OP1 doub N N 41
DA P OP2 sing N N 42
DA P "O5'" sing N N 43
DA OP2 HOP2 sing N N 44
DA "O5'" "C5'" sing N N 45
DA "C5'" "C4'" sing N N 46
DA "C5'" "H5'" sing N N 47
DA "C5'" "H5''" sing N N 48
DA "C4'" "O4'" sing N N 49
DA "C4'" "C3'" sing N N 50
DA "C4'" "H4'" sing N N 51
DA "O4'" "C1'" sing N N 52
DA "C3'" "O3'" sing N N 53
DA "C3'" "C2'" sing N N 54
DA "C3'" "H3'" sing N N 55
DA "O3'" "HO3'" sing N N 56
DA "C2'" "C1'" sing N N 57
DA "C2'" "H2'" sing N N 58
DA "C2'" "H2''" sing N N 59
DA "C1'" N9 sing N N 60
DA "C1'" "H1'" sing N N 61
DA N9 C8 sing Y N 62
DA N9 C4 sing Y N 63
DA C8 N7 doub Y N 64
DA C8 H8 sing N N 65
DA N7 C5 sing Y N 66
DA C5 C6 sing Y N 67
DA C5 C4 doub Y N 68
DA C6 N6 sing N N 69
DA C6 N1 doub Y N 70
DA N6 H61 sing N N 71
DA N6 H62 sing N N 72
DA N1 C2 sing Y N 73
DA C2 N3 doub Y N 74
DA C2 H2 sing N N 75
DA N3 C4 sing Y N 76
DG OP3 P sing N N 77
DG OP3 HOP3 sing N N 78
DG P OP1 doub N N 79
DG P OP2 sing N N 80
DG P "O5'" sing N N 81
DG OP2 HOP2 sing N N 82
DG "O5'" "C5'" sing N N 83
DG "C5'" "C4'" sing N N 84
DG "C5'" "H5'" sing N N 85
DG "C5'" "H5''" sing N N 86
DG "C4'" "O4'" sing N N 87
DG "C4'" "C3'" sing N N 88
DG "C4'" "H4'" sing N N 89
DG "O4'" "C1'" sing N N 90
DG "C3'" "O3'" sing N N 91
DG "C3'" "C2'" sing N N 92
DG "C3'" "H3'" sing N N 93
DG "O3'" "HO3'" sing N N 94
DG "C2'" "C1'" sing N N 95
DG "C2'" "H2'" sing N N 96
DG "C2'" "H2''" sing N N 97
DG "C1'" N9 sing N N 98
DG "C1'" "H1'" sing N N 99
DG N9 C8 sing Y N 100
DG N9 C4 sing Y N 101
DG C8 N7 doub Y N 102
DG C8 H8 sing N N 103
DG N7 C5 sing Y N 104
DG C5 C6 sing N N 105
DG C5 C4 doub Y N 106
DG C6 O6 doub N N 107
DG C6 N1 sing N N 108
DG N1 C2 sing N N 109
DG N1 H1 sing N N 110
DG C2 N2 sing N N 111
DG C2 N3 doub N N 112
DG N2 H21 sing N N 113
DG N2 H22 sing N N 114
DG N3 C4 sing N N 115
DT OP3 P sing N N 116
DT OP3 HOP3 sing N N 117
DT P OP1 doub N N 118
DT P OP2 sing N N 119
DT P "O5'" sing N N 120
DT OP2 HOP2 sing N N 121
DT "O5'" "C5'" sing N N 122
DT "C5'" "C4'" sing N N 123
DT "C5'" "H5'" sing N N 124
DT "C5'" "H5''" sing N N 125
DT "C4'" "O4'" sing N N 126
DT "C4'" "C3'" sing N N 127
DT "C4'" "H4'" sing N N 128
DT "O4'" "C1'" sing N N 129
DT "C3'" "O3'" sing N N 130
DT "C3'" "C2'" sing N N 131
DT "C3'" "H3'" sing N N 132
DT "O3'" "HO3'" sing N N 133
DT "C2'" "C1'" sing N N 134
DT "C2'" "H2'" sing N N 135
DT "C2'" "H2''" sing N N 136
DT "C1'" N1 sing N N 137
DT "C1'" "H1'" sing N N 138
DT N1 C2 sing N N 139
DT N1 C6 sing N N 140
DT C2 O2 doub N N 141
DT C2 N3 sing N N 142
DT N3 C4 sing N N 143
DT N3 H3 sing N N 144
DT C4 O4 doub N N 145
DT C4 C5 sing N N 146
DT C5 C7 sing N N 147
DT C5 C6 doub N N 148
DT C7 H71 sing N N 149
DT C7 H72 sing N N 150
DT C7 H73 sing N N 151
DT C6 H6 sing N N 152
HOH O H1 sing N N 153
HOH O H2 sing N N 154
NGM C1 C2 doub Y N 155
NGM C1 C16 sing Y N 156
NGM C1 O1 sing N N 157
NGM C2 C3 sing Y N 158
NGM C2 C34 sing N N 159
NGM C3 C4 doub Y N 160
NGM C3 H3 sing N N 161
NGM C4 C17 sing Y N 162
NGM C4 O4 sing N N 163
NGM C5 C17 sing N N 164
NGM C5 C18 sing N N 165
NGM C5 O5 doub N N 166
NGM C6 C18 doub Y N 167
NGM C6 C19 sing Y N 168
NGM C6 O6 sing N N 169
NGM C7 C8 sing N N 170
NGM C7 C19 sing N N 171
NGM C7 O7 sing N N 172
NGM C7 H7 sing N N 173
NGM C8 C9 sing N N 174
NGM C8 H81 sing N N 175
NGM C8 H82 sing N N 176
NGM C9 C10 sing N N 177
NGM C9 C13 sing N N 178
NGM C9 O9 sing N N 179
NGM C10 C14 sing N N 180
NGM C10 C20 sing N N 181
NGM C10 H10 sing N N 182
NGM C11 C20 sing Y N 183
NGM C11 C21 doub Y N 184
NGM C11 H11 sing N N 185
NGM C12 C16 sing N N 186
NGM C12 C21 sing N N 187
NGM C12 O12 doub N N 188
NGM C13 H131 sing N N 189
NGM C13 H132 sing N N 190
NGM C13 H133 sing N N 191
NGM C14 O10 sing N N 192
NGM C14 O14 doub N N 193
NGM C15 O10 sing N N 194
NGM C15 H151 sing N N 195
NGM C15 H152 sing N N 196
NGM C15 H153 sing N N 197
NGM C16 C17 doub Y N 198
NGM C18 C21 sing Y N 199
NGM C19 C20 doub Y N 200
NGM C22 C34 sing N N 201
NGM C22 H221 sing N N 202
NGM C22 H222 sing N N 203
NGM C22 H223 sing N N 204
NGM C23 N1 sing N N 205
NGM C23 H231 sing N N 206
NGM C23 H232 sing N N 207
NGM C23 H233 sing N N 208
NGM C24 N1 sing N N 209
NGM C24 H241 sing N N 210
NGM C24 H242 sing N N 211
NGM C24 H243 sing N N 212
NGM C25 "C5'" sing N N 213
NGM C25 H251 sing N N 214
NGM C25 H252 sing N N 215
NGM C25 H253 sing N N 216
NGM C26 "O4'" sing N N 217
NGM C26 H261 sing N N 218
NGM C26 H262 sing N N 219
NGM C26 H263 sing N N 220
NGM C27 "O3'" sing N N 221
NGM C27 H271 sing N N 222
NGM C27 H272 sing N N 223
NGM C27 H273 sing N N 224
NGM C28 "C3'" sing N N 225
NGM C28 H281 sing N N 226
NGM C28 H282 sing N N 227
NGM C28 H283 sing N N 228
NGM C29 "O2'" sing N N 229
NGM C29 H291 sing N N 230
NGM C29 H292 sing N N 231
NGM C29 H293 sing N N 232
NGM C30 C31 sing N N 233
NGM C30 O1 sing N N 234
NGM C30 O2 sing N N 235
NGM C30 H30 sing N N 236
NGM C31 C32 sing N N 237
NGM C31 O15 sing N N 238
NGM C31 H31 sing N N 239
NGM C32 C33 sing N N 240
NGM C32 N1 sing N N 241
NGM C32 H32 sing N N 242
NGM C33 C34 sing N N 243
NGM C33 O16 sing N N 244
NGM C33 H33 sing N N 245
NGM C34 O2 sing N N 246
NGM "C1'" "C2'" sing N N 247
NGM "C1'" O7 sing N N 248
NGM "C1'" "O1'" sing N N 249
NGM "C1'" "H1'" sing N N 250
NGM "C2'" "C3'" sing N N 251
NGM "C2'" "O2'" sing N N 252
NGM "C2'" "H2'" sing N N 253
NGM "C3'" "C4'" sing N N 254
NGM "C3'" "O3'" sing N N 255
NGM "C4'" "C5'" sing N N 256
NGM "C4'" "O4'" sing N N 257
NGM "C4'" "H4'" sing N N 258
NGM "C5'" "O1'" sing N N 259
NGM "C5'" "H5'" sing N N 260
NGM O4 HO4 sing N N 261
NGM O6 HO6 sing N N 262
NGM O9 HO9 sing N N 263
NGM O15 H15 sing N N 264
NGM O16 H16 sing N N 265
#
_ndb_struct_conf_na.entry_id 1D17
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A 5CM 1 1_555 A DG 6 11_655 0.647 -0.449 0.046 12.620 -6.336 -0.820 1 A_5CM1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A 5CM 5 11_655 -0.803 -0.525 -0.580 -25.238 -0.324 -2.501 2 A_DG2:5CM5_A A 2 ? A 5 ? 19 1
1 A DT 3 1_555 A DA 4 11_655 -0.317 -0.219 0.279 -11.447 -6.537 1.196 3 A_DT3:DA4_A A 3 ? A 4 ? 20 1
1 A DA 4 1_555 A DT 3 11_655 0.317 -0.219 0.279 11.447 -6.537 1.196 4 A_DA4:DT3_A A 4 ? A 3 ? 20 1
1 A 5CM 5 1_555 A DG 2 11_655 0.803 -0.525 -0.580 25.238 -0.324 -2.501 5 A_5CM5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A 5CM 1 11_655 -0.647 -0.449 0.046 -12.620 -6.336 -0.820 6 A_DG6:5CM1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A 5CM 1 1_555 A DG 6 11_655 A DG 2 1_555 A 5CM 5 11_655 0.392 0.454 7.377 5.671 2.402 26.677 -0.395 2.370 7.313 5.119
-12.086 27.366 1 AA_5CM1DG2:5CM5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A 5CM 5 11_655 A DT 3 1_555 A DA 4 11_655 -0.816 -0.148 3.041 -7.055 -2.296 27.915 0.196 0.124 3.150 -4.657
14.306 28.865 2 AA_DG2DT3:DA45CM5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DT 3 1_555 A DA 4 11_655 A DA 4 1_555 A DT 3 11_655 0.000 -0.894 2.736 0.000 0.325 42.084 -1.273 0.000 2.729 0.453
0.000 42.085 3 AA_DT3DA4:DT3DA4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DA 4 1_555 A DT 3 11_655 A 5CM 5 1_555 A DG 2 11_655 0.816 -0.148 3.041 7.055 -2.296 27.915 0.196 -0.124 3.150 -4.657
-14.306 28.865 4 AA_DA45CM5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A 5CM 5 1_555 A DG 2 11_655 A DG 6 1_555 A 5CM 1 11_655 -0.392 0.454 7.377 -5.671 2.402 26.677 -0.395 -2.370 7.313 5.119
12.086 27.366 5 AA_5CM5DG6:5CM1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 1D17
_atom_sites.fract_transf_matrix[1][1] 0.038023
_atom_sites.fract_transf_matrix[1][2] 0.021952
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.043905
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.009999
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 . 5CM A 1 1 ? 1.634 20.377 27.209 1.00 15.83 ? 1 5CM A N1 1
HETATM 2 C C2 . 5CM A 1 1 ? 1.517 19.002 27.038 1.00 14.79 ? 1 5CM A C2 1
HETATM 3 N N3 . 5CM A 1 1 ? 1.535 18.496 25.788 1.00 13.80 ? 1 5CM A N3 1
HETATM 4 C C4 . 5CM A 1 1 ? 1.697 19.262 24.703 1.00 13.40 ? 1 5CM A C4 1
HETATM 5 C C5 . 5CM A 1 1 ? 1.774 20.694 24.848 1.00 13.76 ? 1 5CM A C5 1
HETATM 6 C C5A . 5CM A 1 1 ? 1.833 21.642 23.638 1.00 12.91 ? 1 5CM A C5A 1
HETATM 7 C C6 . 5CM A 1 1 ? 1.795 21.193 26.106 1.00 14.81 ? 1 5CM A C6 1
HETATM 8 O O2 . 5CM A 1 1 ? 1.351 18.260 27.997 1.00 15.21 ? 1 5CM A O2 1
HETATM 9 N N4 . 5CM A 1 1 ? 1.854 18.671 23.526 1.00 11.96 ? 1 5CM A N4 1
HETATM 10 C "C1'" . 5CM A 1 1 ? 1.390 20.983 28.564 1.00 16.89 ? 1 5CM A "C1'" 1
HETATM 11 C "C2'" . 5CM A 1 1 ? 2.168 20.423 29.741 1.00 17.85 ? 1 5CM A "C2'" 1
HETATM 12 C "C3'" . 5CM A 1 1 ? 3.532 21.055 29.602 1.00 18.57 ? 1 5CM A "C3'" 1
HETATM 13 C "C4'" . 5CM A 1 1 ? 3.124 22.442 29.127 1.00 18.33 ? 1 5CM A "C4'" 1
HETATM 14 O "O4'" . 5CM A 1 1 ? 1.764 22.371 28.639 1.00 17.51 ? 1 5CM A "O4'" 1
HETATM 15 O "O3'" . 5CM A 1 1 ? 4.431 21.038 30.741 1.00 19.58 ? 1 5CM A "O3'" 1
HETATM 16 C "C5'" . 5CM A 1 1 ? 4.071 22.884 28.036 1.00 18.22 ? 1 5CM A "C5'" 1
HETATM 17 O "O5'" . 5CM A 1 1 ? 3.944 24.286 27.809 1.00 18.27 ? 1 5CM A "O5'" 1
ATOM 18 P P . DG A 1 2 ? 4.712 22.230 31.855 1.00 20.84 ? 2 DG A P 1
ATOM 19 O OP1 . DG A 1 2 ? 3.390 22.598 32.411 1.00 20.85 ? 2 DG A OP1 1
ATOM 20 O OP2 . DG A 1 2 ? 5.599 23.313 31.341 1.00 21.36 ? 2 DG A OP2 1
ATOM 21 O "O5'" . DG A 1 2 ? 5.639 21.470 32.911 1.00 19.55 ? 2 DG A "O5'" 1
ATOM 22 C "C5'" . DG A 1 2 ? 5.524 20.071 33.173 1.00 18.18 ? 2 DG A "C5'" 1
ATOM 23 C "C4'" . DG A 1 2 ? 6.512 19.285 32.353 1.00 16.98 ? 2 DG A "C4'" 1
ATOM 24 O "O4'" . DG A 1 2 ? 6.262 19.221 30.937 1.00 15.27 ? 2 DG A "O4'" 1
ATOM 25 C "C3'" . DG A 1 2 ? 7.937 19.858 32.550 1.00 16.55 ? 2 DG A "C3'" 1
ATOM 26 O "O3'" . DG A 1 2 ? 8.778 18.780 32.956 1.00 17.32 ? 2 DG A "O3'" 1
ATOM 27 C "C2'" . DG A 1 2 ? 8.303 20.176 31.154 1.00 15.23 ? 2 DG A "C2'" 1
ATOM 28 C "C1'" . DG A 1 2 ? 7.596 19.052 30.434 1.00 14.10 ? 2 DG A "C1'" 1
ATOM 29 N N9 . DG A 1 2 ? 7.737 19.166 28.995 1.00 12.09 ? 2 DG A N9 1
ATOM 30 C C8 . DG A 1 2 ? 7.686 20.276 28.237 1.00 11.14 ? 2 DG A C8 1
ATOM 31 N N7 . DG A 1 2 ? 7.762 20.076 26.982 1.00 10.81 ? 2 DG A N7 1
ATOM 32 C C5 . DG A 1 2 ? 8.021 18.709 26.884 1.00 10.49 ? 2 DG A C5 1
ATOM 33 C C6 . DG A 1 2 ? 8.238 17.904 25.747 1.00 10.05 ? 2 DG A C6 1
ATOM 34 O O6 . DG A 1 2 ? 8.335 18.256 24.573 1.00 9.47 ? 2 DG A O6 1
ATOM 35 N N1 . DG A 1 2 ? 8.322 16.575 26.069 1.00 9.60 ? 2 DG A N1 1
ATOM 36 C C2 . DG A 1 2 ? 8.246 16.075 27.325 1.00 10.32 ? 2 DG A C2 1
ATOM 37 N N2 . DG A 1 2 ? 8.373 14.772 27.427 1.00 10.43 ? 2 DG A N2 1
ATOM 38 N N3 . DG A 1 2 ? 8.110 16.814 28.416 1.00 10.79 ? 2 DG A N3 1
ATOM 39 C C4 . DG A 1 2 ? 7.936 18.124 28.109 1.00 11.30 ? 2 DG A C4 1
ATOM 40 P P . DT A 1 3 ? 9.441 18.723 34.415 1.00 17.60 ? 3 DT A P 1
ATOM 41 O OP1 . DT A 1 3 ? 8.366 18.867 35.433 1.00 17.98 ? 3 DT A OP1 1
ATOM 42 O OP2 . DT A 1 3 ? 10.569 19.685 34.368 1.00 18.07 ? 3 DT A OP2 1
ATOM 43 O "O5'" . DT A 1 3 ? 10.040 17.207 34.491 1.00 15.85 ? 3 DT A "O5'" 1
ATOM 44 C "C5'" . DT A 1 3 ? 9.198 16.048 34.311 1.00 13.06 ? 3 DT A "C5'" 1
ATOM 45 C "C4'" . DT A 1 3 ? 9.656 15.228 33.131 1.00 11.01 ? 3 DT A "C4'" 1
ATOM 46 O "O4'" . DT A 1 3 ? 9.612 16.085 31.960 1.00 10.15 ? 3 DT A "O4'" 1
ATOM 47 C "C3'" . DT A 1 3 ? 11.147 14.810 33.322 1.00 10.21 ? 3 DT A "C3'" 1
ATOM 48 O "O3'" . DT A 1 3 ? 11.312 13.449 33.742 1.00 9.40 ? 3 DT A "O3'" 1
ATOM 49 C "C2'" . DT A 1 3 ? 11.716 15.075 31.911 1.00 9.59 ? 3 DT A "C2'" 1
ATOM 50 C "C1'" . DT A 1 3 ? 10.533 15.482 31.016 1.00 8.80 ? 3 DT A "C1'" 1
ATOM 51 N N1 . DT A 1 3 ? 10.981 16.359 29.885 1.00 6.99 ? 3 DT A N1 1
ATOM 52 C C2 . DT A 1 3 ? 11.263 15.741 28.716 1.00 5.88 ? 3 DT A C2 1
ATOM 53 O O2 . DT A 1 3 ? 11.306 14.519 28.636 1.00 5.94 ? 3 DT A O2 1
ATOM 54 N N3 . DT A 1 3 ? 11.540 16.551 27.650 1.00 5.41 ? 3 DT A N3 1
ATOM 55 C C4 . DT A 1 3 ? 11.422 17.910 27.627 1.00 5.49 ? 3 DT A C4 1
ATOM 56 O O4 . DT A 1 3 ? 11.397 18.555 26.593 1.00 4.13 ? 3 DT A O4 1
ATOM 57 C C5 . DT A 1 3 ? 11.295 18.481 28.930 1.00 6.09 ? 3 DT A C5 1
ATOM 58 C C7 . DT A 1 3 ? 11.371 20.026 29.028 1.00 6.63 ? 3 DT A C7 1
ATOM 59 C C6 . DT A 1 3 ? 11.104 17.704 30.007 1.00 6.28 ? 3 DT A C6 1
ATOM 60 P P . DA A 1 4 ? 12.739 12.766 34.002 1.00 9.17 ? 4 DA A P 1
ATOM 61 O OP1 . DA A 1 4 ? 12.519 11.389 34.510 1.00 8.86 ? 4 DA A OP1 1
ATOM 62 O OP2 . DA A 1 4 ? 13.524 13.736 34.772 1.00 8.79 ? 4 DA A OP2 1
ATOM 63 O "O5'" . DA A 1 4 ? 13.433 12.509 32.587 1.00 9.50 ? 4 DA A "O5'" 1
ATOM 64 C "C5'" . DA A 1 4 ? 12.977 11.341 31.845 1.00 9.43 ? 4 DA A "C5'" 1
ATOM 65 C "C4'" . DA A 1 4 ? 13.641 11.037 30.478 1.00 9.24 ? 4 DA A "C4'" 1
ATOM 66 O "O4'" . DA A 1 4 ? 13.505 12.130 29.579 1.00 8.39 ? 4 DA A "O4'" 1
ATOM 67 C "C3'" . DA A 1 4 ? 15.128 10.795 30.645 1.00 10.15 ? 4 DA A "C3'" 1
ATOM 68 O "O3'" . DA A 1 4 ? 15.309 9.374 30.562 1.00 12.67 ? 4 DA A "O3'" 1
ATOM 69 C "C2'" . DA A 1 4 ? 15.723 11.586 29.470 1.00 9.21 ? 4 DA A "C2'" 1
ATOM 70 C "C1'" . DA A 1 4 ? 14.574 12.085 28.634 1.00 7.55 ? 4 DA A "C1'" 1
ATOM 71 N N9 . DA A 1 4 ? 14.795 13.493 28.291 1.00 6.23 ? 4 DA A N9 1
ATOM 72 C C8 . DA A 1 4 ? 14.845 14.564 29.100 1.00 5.04 ? 4 DA A C8 1
ATOM 73 N N7 . DA A 1 4 ? 14.867 15.725 28.550 1.00 4.26 ? 4 DA A N7 1
ATOM 74 C C5 . DA A 1 4 ? 14.776 15.380 27.226 1.00 4.86 ? 4 DA A C5 1
ATOM 75 C C6 . DA A 1 4 ? 14.746 16.138 26.081 1.00 4.41 ? 4 DA A C6 1
ATOM 76 N N6 . DA A 1 4 ? 14.747 17.457 26.127 1.00 5.12 ? 4 DA A N6 1
ATOM 77 N N1 . DA A 1 4 ? 14.670 15.520 24.899 1.00 4.67 ? 4 DA A N1 1
ATOM 78 C C2 . DA A 1 4 ? 14.692 14.199 24.874 1.00 5.26 ? 4 DA A C2 1
ATOM 79 N N3 . DA A 1 4 ? 14.691 13.354 25.917 1.00 5.88 ? 4 DA A N3 1
ATOM 80 C C4 . DA A 1 4 ? 14.771 14.032 27.068 1.00 5.39 ? 4 DA A C4 1
HETATM 81 N N1 . 5CM A 1 5 ? 18.541 13.341 27.150 1.00 10.82 ? 5 5CM A N1 1
HETATM 82 C C2 . 5CM A 1 5 ? 18.132 14.181 26.131 1.00 10.43 ? 5 5CM A C2 1
HETATM 83 N N3 . 5CM A 1 5 ? 17.949 15.482 26.436 1.00 9.76 ? 5 5CM A N3 1
HETATM 84 C C4 . 5CM A 1 5 ? 18.072 15.963 27.640 1.00 8.83 ? 5 5CM A C4 1
HETATM 85 C C5 . 5CM A 1 5 ? 18.479 15.109 28.688 1.00 9.72 ? 5 5CM A C5 1
HETATM 86 C C5A . 5CM A 1 5 ? 18.622 15.634 30.148 1.00 10.44 ? 5 5CM A C5A 1
HETATM 87 C C6 . 5CM A 1 5 ? 18.685 13.815 28.400 1.00 10.31 ? 5 5CM A C6 1
HETATM 88 O O2 . 5CM A 1 5 ? 17.945 13.831 24.957 1.00 9.64 ? 5 5CM A O2 1
HETATM 89 N N4 . 5CM A 1 5 ? 17.745 17.223 27.816 1.00 7.31 ? 5 5CM A N4 1
HETATM 90 C "C1'" . 5CM A 1 5 ? 18.908 11.942 26.825 1.00 12.63 ? 5 5CM A "C1'" 1
HETATM 91 C "C2'" . 5CM A 1 5 ? 20.387 11.692 27.204 1.00 14.17 ? 5 5CM A "C2'" 1
HETATM 92 C "C3'" . 5CM A 1 5 ? 20.558 10.205 27.544 1.00 14.98 ? 5 5CM A "C3'" 1
HETATM 93 C "C4'" . 5CM A 1 5 ? 19.063 9.813 27.750 1.00 14.39 ? 5 5CM A "C4'" 1
HETATM 94 O "O4'" . 5CM A 1 5 ? 18.201 10.990 27.606 1.00 13.29 ? 5 5CM A "O4'" 1
HETATM 95 O "O3'" . 5CM A 1 5 ? 21.364 9.471 26.581 1.00 16.94 ? 5 5CM A "O3'" 1
HETATM 96 C "C5'" . 5CM A 1 5 ? 18.905 9.338 29.209 1.00 14.35 ? 5 5CM A "C5'" 1
HETATM 97 O "O5'" . 5CM A 1 5 ? 17.515 9.181 29.423 1.00 14.03 ? 5 5CM A "O5'" 1
HETATM 98 P P . 5CM A 1 5 ? 16.727 8.597 30.664 1.00 13.79 ? 5 5CM A P 1
HETATM 99 O OP1 . 5CM A 1 5 ? 16.454 7.146 30.398 1.00 14.36 ? 5 5CM A OP1 1
HETATM 100 O OP2 . 5CM A 1 5 ? 17.407 9.018 31.910 1.00 14.73 ? 5 5CM A OP2 1
ATOM 101 P P . DG A 1 6 ? 22.043 7.999 26.850 1.00 17.85 ? 6 DG A P 1
ATOM 102 O OP1 . DG A 1 6 ? 20.936 7.015 26.971 1.00 18.23 ? 6 DG A OP1 1
ATOM 103 O OP2 . DG A 1 6 ? 22.993 8.183 27.982 1.00 18.47 ? 6 DG A OP2 1
ATOM 104 O "O5'" . DG A 1 6 ? 22.825 7.539 25.572 1.00 17.32 ? 6 DG A "O5'" 1
ATOM 105 C "C5'" . DG A 1 6 ? 24.080 7.998 25.034 1.00 17.05 ? 6 DG A "C5'" 1
ATOM 106 C "C4'" . DG A 1 6 ? 23.784 8.516 23.631 1.00 15.93 ? 6 DG A "C4'" 1
ATOM 107 O "O4'" . DG A 1 6 ? 23.126 9.808 23.808 1.00 15.49 ? 6 DG A "O4'" 1
ATOM 108 C "C3'" . DG A 1 6 ? 25.014 8.726 22.708 1.00 15.91 ? 6 DG A "C3'" 1
ATOM 109 O "O3'" . DG A 1 6 ? 24.776 8.408 21.332 1.00 16.48 ? 6 DG A "O3'" 1
ATOM 110 C "C2'" . DG A 1 6 ? 25.295 10.200 22.913 1.00 15.01 ? 6 DG A "C2'" 1
ATOM 111 C "C1'" . DG A 1 6 ? 23.991 10.853 23.312 1.00 14.13 ? 6 DG A "C1'" 1
ATOM 112 N N9 . DG A 1 6 ? 24.275 11.879 24.336 1.00 11.97 ? 6 DG A N9 1
ATOM 113 C C8 . DG A 1 6 ? 24.282 11.827 25.703 1.00 11.47 ? 6 DG A C8 1
ATOM 114 N N7 . DG A 1 6 ? 24.455 12.984 26.315 1.00 10.54 ? 6 DG A N7 1
ATOM 115 C C5 . DG A 1 6 ? 24.569 13.895 25.238 1.00 10.51 ? 6 DG A C5 1
ATOM 116 C C6 . DG A 1 6 ? 24.767 15.316 25.185 1.00 9.65 ? 6 DG A C6 1
ATOM 117 O O6 . DG A 1 6 ? 24.812 16.171 26.062 1.00 8.36 ? 6 DG A O6 1
ATOM 118 N N1 . DG A 1 6 ? 24.883 15.776 23.911 1.00 9.38 ? 6 DG A N1 1
ATOM 119 C C2 . DG A 1 6 ? 24.782 15.039 22.793 1.00 10.45 ? 6 DG A C2 1
ATOM 120 N N2 . DG A 1 6 ? 25.047 15.653 21.637 1.00 10.59 ? 6 DG A N2 1
ATOM 121 N N3 . DG A 1 6 ? 24.550 13.740 22.809 1.00 11.34 ? 6 DG A N3 1
ATOM 122 C C4 . DG A 1 6 ? 24.491 13.219 24.052 1.00 11.27 ? 6 DG A C4 1
HETATM 123 C C1 . NGM B 2 . ? 5.177 19.491 24.136 1.00 6.39 ? 7 NGM A C1 1
HETATM 124 C C2 . NGM B 2 . ? 5.293 19.483 22.774 1.00 7.10 ? 7 NGM A C2 1
HETATM 125 C C3 . NGM B 2 . ? 5.228 18.292 22.070 1.00 6.39 ? 7 NGM A C3 1
HETATM 126 C C4 . NGM B 2 . ? 5.116 17.095 22.742 1.00 5.43 ? 7 NGM A C4 1
HETATM 127 C C5 . NGM B 2 . ? 4.920 15.812 24.839 1.00 4.67 ? 7 NGM A C5 1
HETATM 128 C C6 . NGM B 2 . ? 4.796 14.591 26.986 1.00 6.30 ? 7 NGM A C6 1
HETATM 129 C C7 . NGM B 2 . ? 4.577 13.232 29.151 1.00 9.80 ? 7 NGM A C7 1
HETATM 130 C C8 . NGM B 2 . ? 4.175 13.449 30.578 1.00 10.03 ? 7 NGM A C8 1
HETATM 131 C C9 . NGM B 2 . ? 4.936 14.574 31.329 1.00 9.82 ? 7 NGM A C9 1
HETATM 132 C C10 . NGM B 2 . ? 4.646 15.881 30.600 1.00 9.15 ? 7 NGM A C10 1
HETATM 133 C C11 . NGM B 2 . ? 4.832 16.937 28.376 1.00 5.97 ? 7 NGM A C11 1
HETATM 134 C C12 . NGM B 2 . ? 4.932 18.278 26.340 1.00 5.45 ? 7 NGM A C12 1
HETATM 135 C C13 . NGM B 2 . ? 6.451 14.388 31.445 1.00 10.17 ? 7 NGM A C13 1
HETATM 136 C C14 . NGM B 2 . ? 3.250 16.350 30.932 1.00 9.98 ? 7 NGM A C14 1
HETATM 137 C C15 . NGM B 2 . ? 2.319 18.130 32.011 1.00 11.42 ? 7 NGM A C15 1
HETATM 138 C C16 . NGM B 2 . ? 5.031 18.300 24.836 1.00 5.83 ? 7 NGM A C16 1
HETATM 139 C C17 . NGM B 2 . ? 5.018 17.097 24.126 1.00 5.32 ? 7 NGM A C17 1
HETATM 140 C C18 . NGM B 2 . ? 4.849 15.790 26.311 1.00 5.12 ? 7 NGM A C18 1
HETATM 141 C C19 . NGM B 2 . ? 4.741 14.558 28.393 1.00 8.04 ? 7 NGM A C19 1
HETATM 142 C C20 . NGM B 2 . ? 4.765 15.766 29.076 1.00 7.73 ? 7 NGM A C20 1
HETATM 143 C C21 . NGM B 2 . ? 4.869 16.963 27.022 1.00 5.27 ? 7 NGM A C21 1
HETATM 144 C C22 . NGM B 2 . ? 5.230 20.927 20.659 1.00 8.55 ? 7 NGM A C22 1
HETATM 145 C C23 . NGM B 2 . ? 10.233 21.698 24.299 1.00 12.79 ? 7 NGM A C23 1
HETATM 146 C C24 . NGM B 2 . ? 9.832 22.136 22.036 1.00 13.15 ? 7 NGM A C24 1
HETATM 147 C C25 . NGM B 2 . ? 6.195 10.141 32.329 1.00 17.86 ? 7 NGM A C25 1
HETATM 148 C C26 . NGM B 2 . ? 9.381 8.361 31.145 1.00 19.49 ? 7 NGM A C26 1
HETATM 149 C C27 . NGM B 2 . ? 10.790 11.031 28.519 1.00 18.92 ? 7 NGM A C27 1
HETATM 150 C C28 . NGM B 2 . ? 8.862 12.304 29.961 1.00 17.45 ? 7 NGM A C28 1
HETATM 151 C C29 . NGM B 2 . ? 6.677 9.687 26.476 1.00 17.90 ? 7 NGM A C29 1
HETATM 152 C C30 . NGM B 2 . ? 5.767 21.951 24.141 1.00 8.69 ? 7 NGM A C30 1
HETATM 153 C C31 . NGM B 2 . ? 7.278 22.208 24.178 1.00 9.24 ? 7 NGM A C31 1
HETATM 154 C C32 . NGM B 2 . ? 7.984 21.086 23.424 1.00 10.05 ? 7 NGM A C32 1
HETATM 155 C C33 . NGM B 2 . ? 7.271 20.828 22.075 1.00 9.05 ? 7 NGM A C33 1
HETATM 156 C C34 . NGM B 2 . ? 5.725 20.789 22.095 1.00 8.15 ? 7 NGM A C34 1
HETATM 157 C "C1'" . NGM B 2 . ? 6.000 11.292 28.860 1.00 15.87 ? 7 NGM A "C1'" 1
HETATM 158 C "C2'" . NGM B 2 . ? 7.424 10.982 28.316 1.00 17.26 ? 7 NGM A "C2'" 1
HETATM 159 C "C3'" . NGM B 2 . ? 8.511 10.922 29.393 1.00 17.83 ? 7 NGM A "C3'" 1
HETATM 160 C "C4'" . NGM B 2 . ? 7.883 9.987 30.399 1.00 18.38 ? 7 NGM A "C4'" 1
HETATM 161 C "C5'" . NGM B 2 . ? 6.630 10.668 30.978 1.00 18.15 ? 7 NGM A "C5'" 1
HETATM 162 N N1 . NGM B 2 . ? 9.432 21.260 23.160 1.00 11.75 ? 7 NGM A N1 1
HETATM 163 O O1 . NGM B 2 . ? 5.404 20.722 24.822 1.00 7.82 ? 7 NGM A O1 1
HETATM 164 O O2 . NGM B 2 . ? 5.272 21.965 22.798 1.00 8.48 ? 7 NGM A O2 1
HETATM 165 O O4 . NGM B 2 . ? 5.180 15.903 22.036 1.00 4.34 ? 7 NGM A O4 1
HETATM 166 O O5 . NGM B 2 . ? 4.957 14.779 24.205 1.00 3.55 ? 7 NGM A O5 1
HETATM 167 O O6 . NGM B 2 . ? 4.907 13.429 26.260 1.00 4.50 ? 7 NGM A O6 1
HETATM 168 O O7 . NGM B 2 . ? 5.842 12.635 29.231 1.00 13.01 ? 7 NGM A O7 1
HETATM 169 O O9 . NGM B 2 . ? 4.554 14.563 32.738 1.00 10.40 ? 7 NGM A O9 1
HETATM 170 O O10 . NGM B 2 . ? 3.440 17.664 31.317 1.00 10.73 ? 7 NGM A O10 1
HETATM 171 O O14 . NGM B 2 . ? 2.251 15.633 31.129 1.00 10.04 ? 7 NGM A O14 1
HETATM 172 O O12 . NGM B 2 . ? 4.880 19.307 27.033 1.00 4.59 ? 7 NGM A O12 1
HETATM 173 O O15 . NGM B 2 . ? 7.746 22.278 25.553 1.00 9.45 ? 7 NGM A O15 1
HETATM 174 O O16 . NGM B 2 . ? 7.940 19.656 21.586 1.00 8.67 ? 7 NGM A O16 1
HETATM 175 O "O1'" . NGM B 2 . ? 5.629 10.503 29.961 1.00 17.34 ? 7 NGM A "O1'" 1
HETATM 176 O "O2'" . NGM B 2 . ? 7.313 9.672 27.711 1.00 17.88 ? 7 NGM A "O2'" 1
HETATM 177 O "O3'" . NGM B 2 . ? 9.704 10.255 28.920 1.00 18.56 ? 7 NGM A "O3'" 1
HETATM 178 O "O4'" . NGM B 2 . ? 8.858 9.621 31.390 1.00 19.33 ? 7 NGM A "O4'" 1
HETATM 179 O O . HOH C 3 . ? 4.390 14.645 19.042 1.00 53.72 ? 8 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 1.628 17.083 20.608 1.00 23.55 ? 9 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 0.588 12.625 19.037 1.00 23.89 ? 10 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 2.186 14.080 20.753 1.00 9.93 ? 11 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 15.132 10.765 25.362 1.00 35.21 ? 12 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 11.436 18.264 19.759 1.00 11.00 ? 13 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 11.558 23.163 31.817 1.00 17.89 ? 14 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 14.525 15.784 33.608 1.00 19.22 ? 15 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 2.266 3.832 31.551 1.00 51.96 ? 16 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 4.289 20.118 36.776 1.00 18.15 ? 17 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 3.574 11.238 20.210 1.00 29.43 ? 18 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 18.150 12.176 31.448 1.00 24.21 ? 19 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 12.289 25.454 23.050 1.00 16.35 ? 20 HOH A O 1
HETATM 192 O O . HOH C 3 . ? 14.942 23.425 22.076 1.00 43.47 ? 21 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 4.690 14.095 36.728 1.00 23.99 ? 22 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 9.491 11.181 36.439 1.00 20.23 ? 23 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 3.151 23.800 25.129 1.00 23.16 ? 24 HOH A O 1
HETATM 196 O O . HOH C 3 . ? 8.351 26.788 22.113 1.00 6.24 ? 25 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 4.345 27.456 23.874 1.00 24.48 ? 26 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 10.770 28.259 21.403 1.00 21.90 ? 27 HOH A O 1
HETATM 199 O O . HOH C 3 . ? 10.566 26.534 26.149 1.00 2.64 ? 28 HOH A O 1
HETATM 200 O O . HOH C 3 . ? 6.267 24.341 29.008 1.00 6.80 ? 29 HOH A O 1
HETATM 201 O O . HOH C 3 . ? 8.023 13.562 35.360 1.00 15.25 ? 30 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 16.344 13.781 32.818 1.00 34.72 ? 31 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 2.596 26.858 34.540 1.00 25.00 ? 32 HOH A O 1
HETATM 204 O O . HOH C 3 . ? 3.574 25.970 31.763 1.00 25.00 ? 33 HOH A O 1
HETATM 205 O O . HOH C 3 . ? 27.068 7.076 19.675 1.00 42.51 ? 34 HOH A O 1
HETATM 206 O O . HOH C 3 . ? 3.340 8.992 30.574 1.00 11.08 ? 35 HOH A O 1
HETATM 207 O O . HOH C 3 . ? 3.760 9.193 17.863 1.00 60.61 ? 36 HOH A O 1
HETATM 208 O O . HOH C 3 . ? 11.466 5.563 23.513 1.00 54.11 ? 37 HOH A O 1
HETATM 209 O O . HOH C 3 . ? 13.281 17.700 35.517 1.00 51.51 ? 38 HOH A O 1
HETATM 210 O O . HOH C 3 . ? 14.415 22.392 30.650 1.00 16.83 ? 39 HOH A O 1
HETATM 211 O O . HOH C 3 . ? 11.994 20.360 32.102 1.00 12.07 ? 40 HOH A O 1
HETATM 212 O O . HOH C 3 . ? 10.559 7.468 28.132 1.00 20.56 ? 41 HOH A O 1
HETATM 213 O O . HOH C 3 . ? 9.490 11.309 33.586 1.00 41.13 ? 42 HOH A O 1
HETATM 214 O O . HOH C 3 . ? 7.427 26.106 27.108 1.00 29.92 ? 43 HOH A O 1
HETATM 215 O O . HOH C 3 . ? 11.929 19.959 22.416 1.00 13.24 ? 44 HOH A O 1
HETATM 216 O O . HOH C 3 . ? 6.050 25.377 24.706 1.00 40.61 ? 45 HOH A O 1
HETATM 217 O O . HOH C 3 . ? 9.192 24.593 23.697 1.00 37.86 ? 46 HOH A O 1
#