data_1D14
#
_entry.id 1D14
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1D14 pdb_00001d14 10.2210/pdb1d14/pdb
RCSB DDFP21 ? ?
WWPDB D_1000172619 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1990-10-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 2 0 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Database references'
6 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' atom_site
2 4 'Structure model' chem_comp_atom
3 4 'Structure model' chem_comp_bond
4 4 'Structure model' database_2
5 4 'Structure model' struct_conn
6 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_atom_site.occupancy'
2 4 'Structure model' '_database_2.pdbx_DOI'
3 4 'Structure model' '_database_2.pdbx_database_accession'
4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
5 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1D14
_pdbx_database_status.recvd_initial_deposition_date 1989-10-20
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Williams, L.D.' 1
'Egli, M.' 2
'Ughetto, G.' 3
'Van Der Marel, G.A.' 4
'Van Boom, J.H.' 5
'Quigley, G.J.' 6
'Wang, A.H.-J.' 7
'Rich, A.' 8
'Frederick, C.A.' 9
#
_citation.id primary
_citation.title 'Structure of 11-deoxydaunomycin bound to DNA containing a phosphorothioate.'
_citation.journal_abbrev J.Mol.Biol.
_citation.journal_volume 215
_citation.page_first 313
_citation.page_last 320
_citation.year 1990
_citation.journal_id_ASTM JMOBAK
_citation.country UK
_citation.journal_id_ISSN 0022-2836
_citation.journal_id_CSD 0070
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 2152325
_citation.pdbx_database_id_DOI '10.1016/S0022-2836(05)80349-3'
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Williams, L.D.' 1 ?
primary 'Egli, M.' 2 ?
primary 'Ughetto, G.' 3 ?
primary 'van der Marel, G.A.' 4 ?
primary 'van Boom, J.H.' 5 ?
primary 'Quigley, G.J.' 6 ?
primary 'Wang, A.H.' 7 ?
primary 'Rich, A.' 8 ?
primary 'Frederick, C.A.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*TP*(AS)P*CP*G)-3')
;
1825.282 1 ? ? ? ?
2 non-polymer syn 6-DEOXYDAUNOMYCIN 511.520 1 ? ? ? ?
3 water nat water 18.015 37 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(AS)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 6-DEOXYDAUNOMYCIN DM3
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 AS n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
AS 'DNA linking' n
;2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE
;
? 'C10 H14 N5 O5 P S' 347.287
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DM3 non-polymer . 6-DEOXYDAUNOMYCIN ? 'C27 H29 N O9' 511.520
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 AS 4 4 4 AS +A A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM3 1 7 7 DM3 DM3 A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
C 3 HOH 34 41 41 HOH HOH A .
C 3 HOH 35 42 42 HOH HOH A .
C 3 HOH 36 43 43 HOH HOH A .
C 3 HOH 37 44 44 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1D14
_cell.length_a 17.730
_cell.length_b 19.130
_cell.length_c 26.360
_cell.angle_alpha 90.00
_cell.angle_beta 98.01
_cell.angle_gamma 90.00
_cell.Z_PDB 2
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1D14
_symmetry.space_group_name_H-M 'P 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 3
#
_exptl.entry_id 1D14
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.43
_exptl_crystal.density_percent_sol 49.28
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 SPERMINE ? ? ?
1 5 1 MGCL2 ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 283.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'NICOLET P3'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source ?
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1D14
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F 2.000
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.500
_reflns.number_obs 2129
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1D14
_refine.ls_number_reflns_obs 2129
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.500
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.224
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 119
_refine_hist.pdbx_number_atoms_ligand 38
_refine_hist.number_atoms_solvent 37
_refine_hist.number_atoms_total 194
_refine_hist.d_res_high 1.500
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1D14
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1D14
_struct.title 'STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1D14
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1D14
_struct_ref.pdbx_db_accession 1D14
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1D14
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1D14
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1.0000000000 0.0000000000 0.0000000000 28.1136824005 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 52.2056512049
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A AS 4 P ? ? A DT 3 A AS 4 1_555 ? ? ? ? ? ? ? 1.557 ? ?
covale2 covale both ? A AS 4 "O3'" ? ? ? 1_555 A DC 5 P ? ? A AS 4 A DC 5 1_555 ? ? ? ? ? ? ? 1.575 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A AS 4 N1 ? ? A DT 3 A AS 4 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A AS 4 N6 ? ? A DT 3 A AS 4 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A AS 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A AS 4 A DT 3 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A AS 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A AS 4 A DT 3 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 2_757 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DM3 7 ? 12 'BINDING SITE FOR RESIDUE DM3 A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 12 DC A 1 ? DC A 1 . ? 1_555 ?
2 AC1 12 DG A 2 ? DG A 2 . ? 1_555 ?
3 AC1 12 DT A 3 ? DT A 3 . ? 1_455 ?
4 AC1 12 DT A 3 ? DT A 3 . ? 1_555 ?
5 AC1 12 AS A 4 ? AS A 4 . ? 1_555 ?
6 AC1 12 HOH C . ? HOH A 12 . ? 1_555 ?
7 AC1 12 HOH C . ? HOH A 13 . ? 1_555 ?
8 AC1 12 HOH C . ? HOH A 15 . ? 1_555 ?
9 AC1 12 HOH C . ? HOH A 17 . ? 1_555 ?
10 AC1 12 HOH C . ? HOH A 26 . ? 1_555 ?
11 AC1 12 HOH C . ? HOH A 29 . ? 1_555 ?
12 AC1 12 HOH C . ? HOH A 39 . ? 1_655 ?
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 HOH
_pdbx_validate_symm_contact.auth_seq_id_1 43
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 HOH
_pdbx_validate_symm_contact.auth_seq_id_2 43
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 2_857
_pdbx_validate_symm_contact.dist 1.95
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.628 1.519 0.109 0.010 N
2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? 1.317 1.397 -0.080 0.010 N
3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.401 1.335 0.066 0.007 N
4 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.658 1.593 0.065 0.010 N
5 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.383 1.419 -0.036 0.006 N
6 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.313 1.391 -0.078 0.007 N
7 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.329 1.374 -0.045 0.007 N
8 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.200 1.341 -0.141 0.010 N
9 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? 1.509 1.420 0.089 0.011 N
10 1 "O3'" A DT 3 ? ? "C3'" A DT 3 ? ? 1.367 1.419 -0.052 0.006 N
11 1 P A DC 5 ? ? OP1 A DC 5 ? ? 1.360 1.485 -0.125 0.017 N
12 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.698 1.593 0.105 0.010 N
13 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.563 1.512 0.051 0.007 N
14 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.332 1.418 -0.086 0.012 N
15 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.366 1.446 -0.080 0.010 N
16 1 N1 A DC 5 ? ? C6 A DC 5 ? ? 1.406 1.367 0.039 0.006 N
17 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.405 1.335 0.070 0.007 N
18 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.659 1.593 0.066 0.010 N
19 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.622 1.529 0.093 0.010 N
20 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.510 1.420 0.090 0.011 N
21 1 N1 A DG 6 ? ? C2 A DG 6 ? ? 1.312 1.373 -0.061 0.008 N
22 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.332 1.391 -0.059 0.007 N
23 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.225 1.341 -0.116 0.010 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 97.06 102.40 -5.34 0.80 N
2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 96.34 108.00 -11.66 0.70 N
3 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 124.24 119.90 4.34 0.50 N
4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.68 121.90 -5.22 0.40 N
5 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 111.52 119.70 -8.18 1.20 Y
6 1 P A DG 2 ? ? "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 108.64 120.90 -12.26 1.60 N
7 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 102.06 104.50 -2.44 0.40 N
8 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 94.55 102.40 -7.85 0.80 N
9 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.57 108.30 3.26 0.30 N
10 1 C4 A DG 2 ? ? C5 A DG 2 ? ? C6 A DG 2 ? ? 114.23 118.80 -4.57 0.60 N
11 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 118.82 111.50 7.32 0.50 N
12 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 108.60 113.10 -4.50 0.50 N
13 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 111.53 106.40 5.13 0.40 N
14 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 102.49 105.40 -2.91 0.40 N
15 1 N3 A DG 2 ? ? C4 A DG 2 ? ? N9 A DG 2 ? ? 130.99 126.00 4.99 0.60 N
16 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 134.20 130.40 3.80 0.60 N
17 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 123.80 116.20 7.60 0.90 N
18 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 112.60 119.90 -7.30 0.70 N
19 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 120.82 128.60 -7.78 0.60 N
20 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 128.64 119.70 8.94 1.20 Y
21 1 "O5'" A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 119.65 110.70 8.95 1.20 N
22 1 P A DT 3 ? ? "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? 106.84 120.90 -14.06 1.60 N
23 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? 110.39 106.00 4.39 0.60 N
24 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 98.32 108.00 -9.68 0.70 N
25 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.61 104.50 -2.89 0.40 N
26 1 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 115.47 110.30 5.17 0.70 N
27 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 120.35 108.30 12.05 0.30 N
28 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 123.25 119.90 3.35 0.50 N
29 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 117.11 121.90 -4.79 0.40 N
30 1 C4 A DC 5 ? ? C5 A DC 5 ? ? C6 A DC 5 ? ? 120.57 117.40 3.17 0.50 N
31 1 C5 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 128.95 120.20 8.75 0.70 N
32 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 126.95 119.70 7.25 1.20 Y
33 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 88.85 105.70 -16.85 0.90 N
34 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 128.79 123.90 4.89 0.60 N
35 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 107.77 111.90 -4.13 0.50 N
36 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.74 111.50 3.24 0.50 N
37 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 123.17 116.20 6.97 0.90 N
38 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 108.04 119.90 -11.86 0.70 N
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id AS
_pdbx_struct_mod_residue.label_seq_id 4
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id AS
_pdbx_struct_mod_residue.auth_seq_id 4
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DA
_pdbx_struct_mod_residue.details ?
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 44
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id C
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
AS P P N N 1
AS OP1 O N N 2
AS S2P S N N 3
AS OP3 O N N 4
AS "O5'" O N N 5
AS "C5'" C N N 6
AS "C4'" C N R 7
AS "O4'" O N N 8
AS "C3'" C N S 9
AS "O3'" O N N 10
AS "C2'" C N N 11
AS "C1'" C N R 12
AS N9 N Y N 13
AS C8 C Y N 14
AS N7 N Y N 15
AS C5 C Y N 16
AS C6 C Y N 17
AS N6 N N N 18
AS N1 N Y N 19
AS C2 C Y N 20
AS N3 N Y N 21
AS C4 C Y N 22
AS HOP1 H N N 23
AS HOP3 H N N 24
AS "H5'" H N N 25
AS "H5''" H N N 26
AS "H4'" H N N 27
AS "H3'" H N N 28
AS "HO3'" H N N 29
AS "H2'" H N N 30
AS "H2''" H N N 31
AS "H1'" H N N 32
AS H8 H N N 33
AS HN61 H N N 34
AS HN62 H N N 35
AS H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DM3 C1 C Y N 108
DM3 C2 C Y N 109
DM3 C3 C Y N 110
DM3 C4 C Y N 111
DM3 O4 O N N 112
DM3 C5 C Y N 113
DM3 C6 C N N 114
DM3 O6 O N N 115
DM3 C7 C Y N 116
DM3 C8 C Y N 117
DM3 O8 O N N 118
DM3 C9 C Y N 119
DM3 C10 C N S 120
DM3 O10 O N N 121
DM3 C11 C N N 122
DM3 C12 C N S 123
DM3 O12 O N N 124
DM3 C13 C N N 125
DM3 O13 O N N 126
DM3 C14 C N N 127
DM3 C15 C N N 128
DM3 C16 C Y N 129
DM3 C17 C Y N 130
DM3 C18 C Y N 131
DM3 C19 C N N 132
DM3 O19 O N N 133
DM3 C20 C Y N 134
DM3 C21 C N N 135
DM3 "C1'" C N R 136
DM3 "C2'" C N N 137
DM3 "C3'" C N S 138
DM3 "N3'" N N N 139
DM3 "C4'" C N S 140
DM3 "O4'" O N N 141
DM3 "C5'" C N S 142
DM3 "O5'" O N N 143
DM3 "C6'" C N N 144
DM3 H1 H N N 145
DM3 H2 H N N 146
DM3 H3 H N N 147
DM3 HO8 H N N 148
DM3 H10 H N N 149
DM3 H111 H N N 150
DM3 H112 H N N 151
DM3 HO12 H N N 152
DM3 H141 H N N 153
DM3 H142 H N N 154
DM3 H143 H N N 155
DM3 H151 H N N 156
DM3 H152 H N N 157
DM3 H17 H N N 158
DM3 H211 H N N 159
DM3 H212 H N N 160
DM3 H213 H N N 161
DM3 "H1'" H N N 162
DM3 "H2'1" H N N 163
DM3 "H2'2" H N N 164
DM3 "H3'" H N N 165
DM3 "HN'1" H N N 166
DM3 "HN'2" H N N 167
DM3 "H4'" H N N 168
DM3 "HO4'" H N N 169
DM3 "H5'" H N N 170
DM3 "H6'1" H N N 171
DM3 "H6'2" H N N 172
DM3 "H6'3" H N N 173
DT OP3 O N N 174
DT P P N N 175
DT OP1 O N N 176
DT OP2 O N N 177
DT "O5'" O N N 178
DT "C5'" C N N 179
DT "C4'" C N R 180
DT "O4'" O N N 181
DT "C3'" C N S 182
DT "O3'" O N N 183
DT "C2'" C N N 184
DT "C1'" C N R 185
DT N1 N N N 186
DT C2 C N N 187
DT O2 O N N 188
DT N3 N N N 189
DT C4 C N N 190
DT O4 O N N 191
DT C5 C N N 192
DT C7 C N N 193
DT C6 C N N 194
DT HOP3 H N N 195
DT HOP2 H N N 196
DT "H5'" H N N 197
DT "H5''" H N N 198
DT "H4'" H N N 199
DT "H3'" H N N 200
DT "HO3'" H N N 201
DT "H2'" H N N 202
DT "H2''" H N N 203
DT "H1'" H N N 204
DT H3 H N N 205
DT H71 H N N 206
DT H72 H N N 207
DT H73 H N N 208
DT H6 H N N 209
HOH O O N N 210
HOH H1 H N N 211
HOH H2 H N N 212
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AS P OP1 sing N N 1
AS P S2P doub N N 2
AS P OP3 sing N N 3
AS P "O5'" sing N N 4
AS OP1 HOP1 sing N N 5
AS OP3 HOP3 sing N N 6
AS "O5'" "C5'" sing N N 7
AS "C5'" "C4'" sing N N 8
AS "C5'" "H5'" sing N N 9
AS "C5'" "H5''" sing N N 10
AS "C4'" "O4'" sing N N 11
AS "C4'" "C3'" sing N N 12
AS "C4'" "H4'" sing N N 13
AS "O4'" "C1'" sing N N 14
AS "C3'" "O3'" sing N N 15
AS "C3'" "C2'" sing N N 16
AS "C3'" "H3'" sing N N 17
AS "O3'" "HO3'" sing N N 18
AS "C2'" "C1'" sing N N 19
AS "C2'" "H2'" sing N N 20
AS "C2'" "H2''" sing N N 21
AS "C1'" N9 sing N N 22
AS "C1'" "H1'" sing N N 23
AS N9 C8 sing Y N 24
AS N9 C4 sing Y N 25
AS C8 N7 doub Y N 26
AS C8 H8 sing N N 27
AS N7 C5 sing Y N 28
AS C5 C6 sing Y N 29
AS C5 C4 doub Y N 30
AS C6 N6 sing N N 31
AS C6 N1 doub Y N 32
AS N6 HN61 sing N N 33
AS N6 HN62 sing N N 34
AS N1 C2 sing Y N 35
AS C2 N3 doub Y N 36
AS C2 H2 sing N N 37
AS N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DM3 C1 C2 doub Y N 113
DM3 C1 C20 sing Y N 114
DM3 C1 H1 sing N N 115
DM3 C2 C3 sing Y N 116
DM3 C2 H2 sing N N 117
DM3 C3 C4 doub Y N 118
DM3 C3 H3 sing N N 119
DM3 C4 O4 sing N N 120
DM3 C4 C5 sing Y N 121
DM3 O4 C21 sing N N 122
DM3 C5 C6 sing N N 123
DM3 C5 C20 doub Y N 124
DM3 C6 O6 doub N N 125
DM3 C6 C7 sing N N 126
DM3 C7 C8 doub Y N 127
DM3 C7 C18 sing Y N 128
DM3 C8 O8 sing N N 129
DM3 C8 C9 sing Y N 130
DM3 O8 HO8 sing N N 131
DM3 C9 C10 sing N N 132
DM3 C9 C16 doub Y N 133
DM3 C10 O10 sing N N 134
DM3 C10 C11 sing N N 135
DM3 C10 H10 sing N N 136
DM3 O10 "C1'" sing N N 137
DM3 C11 C12 sing N N 138
DM3 C11 H111 sing N N 139
DM3 C11 H112 sing N N 140
DM3 C12 O12 sing N N 141
DM3 C12 C13 sing N N 142
DM3 C12 C15 sing N N 143
DM3 O12 HO12 sing N N 144
DM3 C13 O13 doub N N 145
DM3 C13 C14 sing N N 146
DM3 C14 H141 sing N N 147
DM3 C14 H142 sing N N 148
DM3 C14 H143 sing N N 149
DM3 C15 C16 sing N N 150
DM3 C15 H151 sing N N 151
DM3 C15 H152 sing N N 152
DM3 C16 C17 sing Y N 153
DM3 C17 C18 doub Y N 154
DM3 C17 H17 sing N N 155
DM3 C18 C19 sing N N 156
DM3 C19 O19 doub N N 157
DM3 C19 C20 sing N N 158
DM3 C21 H211 sing N N 159
DM3 C21 H212 sing N N 160
DM3 C21 H213 sing N N 161
DM3 "C1'" "C2'" sing N N 162
DM3 "C1'" "O5'" sing N N 163
DM3 "C1'" "H1'" sing N N 164
DM3 "C2'" "C3'" sing N N 165
DM3 "C2'" "H2'1" sing N N 166
DM3 "C2'" "H2'2" sing N N 167
DM3 "C3'" "N3'" sing N N 168
DM3 "C3'" "C4'" sing N N 169
DM3 "C3'" "H3'" sing N N 170
DM3 "N3'" "HN'1" sing N N 171
DM3 "N3'" "HN'2" sing N N 172
DM3 "C4'" "O4'" sing N N 173
DM3 "C4'" "C5'" sing N N 174
DM3 "C4'" "H4'" sing N N 175
DM3 "O4'" "HO4'" sing N N 176
DM3 "C5'" "O5'" sing N N 177
DM3 "C5'" "C6'" sing N N 178
DM3 "C5'" "H5'" sing N N 179
DM3 "C6'" "H6'1" sing N N 180
DM3 "C6'" "H6'2" sing N N 181
DM3 "C6'" "H6'3" sing N N 182
DT OP3 P sing N N 183
DT OP3 HOP3 sing N N 184
DT P OP1 doub N N 185
DT P OP2 sing N N 186
DT P "O5'" sing N N 187
DT OP2 HOP2 sing N N 188
DT "O5'" "C5'" sing N N 189
DT "C5'" "C4'" sing N N 190
DT "C5'" "H5'" sing N N 191
DT "C5'" "H5''" sing N N 192
DT "C4'" "O4'" sing N N 193
DT "C4'" "C3'" sing N N 194
DT "C4'" "H4'" sing N N 195
DT "O4'" "C1'" sing N N 196
DT "C3'" "O3'" sing N N 197
DT "C3'" "C2'" sing N N 198
DT "C3'" "H3'" sing N N 199
DT "O3'" "HO3'" sing N N 200
DT "C2'" "C1'" sing N N 201
DT "C2'" "H2'" sing N N 202
DT "C2'" "H2''" sing N N 203
DT "C1'" N1 sing N N 204
DT "C1'" "H1'" sing N N 205
DT N1 C2 sing N N 206
DT N1 C6 sing N N 207
DT C2 O2 doub N N 208
DT C2 N3 sing N N 209
DT N3 C4 sing N N 210
DT N3 H3 sing N N 211
DT C4 O4 doub N N 212
DT C4 C5 sing N N 213
DT C5 C7 sing N N 214
DT C5 C6 doub N N 215
DT C7 H71 sing N N 216
DT C7 H72 sing N N 217
DT C7 H73 sing N N 218
DT C6 H6 sing N N 219
HOH O H1 sing N N 220
HOH O H2 sing N N 221
#
_ndb_struct_conf_na.entry_id 1D14
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 2_757 0.213 -0.288 -0.127 6.807 3.916 1.685 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 2_757 -0.394 -0.212 -0.363 -15.981 -0.477 2.481 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DT 3 1_555 A AS 4 2_757 -0.218 -0.152 0.185 -1.279 -7.390 0.613 3 A_DT3:AS4_A A 3 ? A 4 ? 20 1
1 A AS 4 1_555 A DT 3 2_757 0.218 -0.152 0.185 1.279 -7.390 0.613 4 A_AS4:DT3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 2_757 0.394 -0.212 -0.363 15.981 -0.477 2.481 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 2_757 -0.213 -0.288 -0.127 -6.807 3.916 1.685 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 2_757 A DG 2 1_555 A DC 5 2_757 0.981 1.485 7.027 0.252 -2.886 36.287 3.233 -1.495 6.899 -4.624 -0.404
36.398 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 2_757 A DT 3 1_555 A AS 4 2_757 -0.939 -0.099 3.042 -5.302 -3.161 31.480 0.364 0.788 3.149 -5.756 9.656
32.065 2 AA_DG2DT3:AS4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DT 3 1_555 A AS 4 2_757 A AS 4 1_555 A DT 3 2_757 0.000 -0.591 3.205 0.000 1.235 42.364 -0.940 0.000 3.187 1.708 0.000
42.381 3 AA_DT3AS4:DT3AS4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A AS 4 1_555 A DT 3 2_757 A DC 5 1_555 A DG 2 2_757 0.939 -0.099 3.042 5.302 -3.161 31.480 0.364 -0.788 3.149 -5.756 -9.656
32.065 4 AA_AS4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 2_757 A DG 6 1_555 A DC 1 2_757 -0.981 1.485 7.027 -0.252 -2.886 36.287 3.233 1.495 6.899 -4.624 0.404
36.398 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 1D14
_atom_sites.fract_transf_matrix[1][1] 0.056402
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.007937
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.052274
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.038310
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
S
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 12.518 26.434 35.216 1.00 29.60 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 13.345 27.165 36.213 1.00 27.71 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 14.279 26.291 37.006 1.00 25.98 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 13.595 25.234 37.689 1.00 23.98 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 15.354 25.499 36.162 1.00 25.78 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 16.589 25.703 36.885 1.00 26.99 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 14.904 24.059 36.104 1.00 23.42 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 14.182 24.016 37.563 1.00 20.07 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.918 23.233 37.471 1.00 17.06 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 13.046 21.926 37.569 1.00 15.05 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.124 21.433 37.742 1.00 15.38 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 11.937 21.172 37.467 1.00 14.97 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 10.653 21.685 37.241 1.00 15.12 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 9.569 20.852 37.151 1.00 14.71 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.541 23.079 37.139 1.00 16.12 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 11.683 23.831 37.270 1.00 16.22 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 17.562 26.687 36.109 1.00 28.15 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 18.731 26.862 36.998 1.00 29.04 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 16.873 27.750 35.507 1.00 28.37 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 18.097 25.711 34.880 1.00 26.78 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 18.691 24.577 35.437 1.00 24.63 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 18.907 23.576 34.353 1.00 23.48 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 17.644 22.971 33.927 1.00 21.88 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 19.454 24.182 33.003 1.00 23.69 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 20.198 23.116 32.532 1.00 25.48 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 18.157 24.479 32.164 1.00 21.41 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 17.489 23.092 32.472 1.00 18.50 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 16.123 23.144 32.096 1.00 15.75 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 15.442 24.279 31.974 1.00 14.76 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 14.204 23.991 31.562 1.00 14.82 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 14.165 22.632 31.420 1.00 14.15 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 13.181 21.714 30.986 1.00 12.82 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.996 22.110 30.693 1.00 13.61 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.460 20.431 31.005 1.00 12.14 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.662 19.975 31.349 1.00 11.34 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 14.954 18.811 31.369 1.00 10.90 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 15.657 20.750 31.705 1.00 13.46 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 15.359 22.059 31.750 1.00 13.57 ? 2 DG A C4 1
ATOM 39 P P . DT A 1 3 ? 21.790 23.051 32.217 1.00 26.39 ? 3 DT A P 1
ATOM 40 O OP1 . DT A 1 3 ? 22.326 23.404 33.489 1.00 27.10 ? 3 DT A OP1 1
ATOM 41 O OP2 . DT A 1 3 ? 21.890 23.875 31.013 1.00 26.80 ? 3 DT A OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? 22.094 21.469 32.129 1.00 24.35 ? 3 DT A "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? 21.641 21.029 30.837 1.00 21.78 ? 3 DT A "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? 21.074 19.635 31.028 1.00 19.68 ? 3 DT A "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? 19.632 19.746 31.004 1.00 18.09 ? 3 DT A "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? 21.552 18.701 29.927 1.00 18.81 ? 3 DT A "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? 21.686 17.398 30.318 1.00 19.77 ? 3 DT A "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? 20.421 18.780 28.863 1.00 17.55 ? 3 DT A "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? 19.202 19.020 29.753 1.00 15.82 ? 3 DT A "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? 18.176 20.017 29.263 1.00 13.43 ? 3 DT A N1 1
ATOM 51 C C2 . DT A 1 3 ? 17.019 19.372 28.844 1.00 12.58 ? 3 DT A C2 1
ATOM 52 O O2 . DT A 1 3 ? 16.890 18.178 28.863 1.00 13.21 ? 3 DT A O2 1
ATOM 53 N N3 . DT A 1 3 ? 16.029 20.164 28.422 1.00 12.42 ? 3 DT A N3 1
ATOM 54 C C4 . DT A 1 3 ? 16.057 21.531 28.350 1.00 12.87 ? 3 DT A C4 1
ATOM 55 O O4 . DT A 1 3 ? 15.057 22.214 27.981 1.00 12.86 ? 3 DT A O4 1
ATOM 56 C C5 . DT A 1 3 ? 17.292 22.157 28.743 1.00 13.54 ? 3 DT A C5 1
ATOM 57 C C7 . DT A 1 3 ? 17.418 23.640 28.701 1.00 13.57 ? 3 DT A C7 1
ATOM 58 C C6 . DT A 1 3 ? 18.293 21.362 29.207 1.00 13.19 ? 3 DT A C6 1
HETATM 59 P P . AS A 1 4 ? 22.251 16.233 29.453 1.00 22.11 ? 4 AS A P 1
HETATM 60 O OP1 . AS A 1 4 ? 22.227 14.994 30.130 1.00 20.29 ? 4 AS A OP1 1
HETATM 61 S S2P . AS A 1 4 ? 23.517 16.773 28.574 1.00 26.04 ? 4 AS A S2P 1
HETATM 62 O "O5'" . AS A 1 4 ? 20.952 15.993 28.385 1.00 20.06 ? 4 AS A "O5'" 1
HETATM 63 C "C5'" . AS A 1 4 ? 21.146 14.967 27.428 1.00 18.59 ? 4 AS A "C5'" 1
HETATM 64 C "C4'" . AS A 1 4 ? 19.722 14.515 27.049 1.00 17.51 ? 4 AS A "C4'" 1
HETATM 65 O "O4'" . AS A 1 4 ? 18.733 15.575 27.127 1.00 15.83 ? 4 AS A "O4'" 1
HETATM 66 C "C3'" . AS A 1 4 ? 19.679 13.968 25.544 1.00 17.65 ? 4 AS A "C3'" 1
HETATM 67 O "O3'" . AS A 1 4 ? 18.993 12.776 25.581 1.00 19.85 ? 4 AS A "O3'" 1
HETATM 68 C "C2'" . AS A 1 4 ? 19.067 15.082 24.861 1.00 15.07 ? 4 AS A "C2'" 1
HETATM 69 C "C1'" . AS A 1 4 ? 18.075 15.653 25.788 1.00 12.52 ? 4 AS A "C1'" 1
HETATM 70 N N9 . AS A 1 4 ? 17.836 17.033 25.618 1.00 10.52 ? 4 AS A N9 1
HETATM 71 C C8 . AS A 1 4 ? 18.583 18.058 25.785 1.00 8.97 ? 4 AS A C8 1
HETATM 72 N N7 . AS A 1 4 ? 18.045 19.230 25.579 1.00 9.74 ? 4 AS A N7 1
HETATM 73 C C5 . AS A 1 4 ? 16.769 18.873 25.208 1.00 9.34 ? 4 AS A C5 1
HETATM 74 C C6 . AS A 1 4 ? 15.669 19.733 24.812 1.00 8.44 ? 4 AS A C6 1
HETATM 75 N N6 . AS A 1 4 ? 15.671 21.055 24.754 1.00 9.48 ? 4 AS A N6 1
HETATM 76 N N1 . AS A 1 4 ? 14.584 19.025 24.516 1.00 9.17 ? 4 AS A N1 1
HETATM 77 C C2 . AS A 1 4 ? 14.527 17.705 24.583 1.00 7.82 ? 4 AS A C2 1
HETATM 78 N N3 . AS A 1 4 ? 15.474 16.799 24.889 1.00 9.77 ? 4 AS A N3 1
HETATM 79 C C4 . AS A 1 4 ? 16.589 17.549 25.202 1.00 9.26 ? 4 AS A C4 1
ATOM 80 P P . DC A 1 5 ? 19.318 11.653 24.526 1.00 20.74 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 18.683 10.496 24.856 1.00 20.52 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 20.739 11.840 24.102 1.00 22.16 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 18.421 12.189 23.188 1.00 21.15 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 17.025 12.074 23.116 1.00 20.30 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 16.521 12.931 21.910 1.00 18.31 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 16.516 14.257 22.238 1.00 16.89 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 17.323 12.942 20.565 1.00 19.32 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 16.439 12.648 19.471 1.00 21.97 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 17.957 14.291 20.508 1.00 17.45 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 16.838 15.092 21.252 1.00 14.42 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 17.348 16.424 21.552 1.00 12.77 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 16.377 17.368 21.586 1.00 10.93 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 15.226 17.032 21.420 1.00 12.29 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 16.758 18.637 21.765 1.00 11.24 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 18.088 19.014 22.016 1.00 10.02 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 18.255 20.342 22.206 1.00 10.80 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 19.041 18.008 22.012 1.00 10.81 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 18.692 16.755 21.801 1.00 11.33 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 16.378 11.307 18.630 1.00 23.81 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 15.907 10.187 19.340 1.00 23.93 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 17.618 11.375 17.845 1.00 23.97 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 14.960 11.315 17.768 1.00 23.11 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 14.192 12.494 17.761 1.00 22.43 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 13.228 12.466 16.560 1.00 21.21 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 13.373 13.726 15.945 1.00 20.29 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 13.559 11.442 15.346 1.00 21.13 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 12.248 11.036 14.885 1.00 23.30 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 14.570 12.171 14.558 1.00 19.14 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 14.118 13.616 14.636 1.00 16.71 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 15.184 14.537 14.765 1.00 14.48 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 16.435 14.153 15.035 1.00 14.26 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 17.280 15.155 15.175 1.00 14.09 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 16.499 16.246 14.928 1.00 12.74 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 16.802 17.607 14.935 1.00 12.45 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 17.951 18.109 15.193 1.00 12.82 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 15.776 18.408 14.652 1.00 12.51 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.569 17.952 14.416 1.00 11.46 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 13.617 18.678 14.158 1.00 12.41 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 14.146 16.701 14.398 1.00 12.81 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 15.205 15.901 14.687 1.00 12.87 ? 6 DG A C4 1
HETATM 121 C C1 . DM3 B 2 . ? 9.002 21.100 33.532 1.00 12.65 ? 7 DM3 A C1 1
HETATM 122 C C2 . DM3 B 2 . ? 7.680 20.629 33.252 1.00 12.64 ? 7 DM3 A C2 1
HETATM 123 C C3 . DM3 B 2 . ? 7.394 19.282 33.174 1.00 12.83 ? 7 DM3 A C3 1
HETATM 124 C C4 . DM3 B 2 . ? 8.420 18.382 33.345 1.00 12.52 ? 7 DM3 A C4 1
HETATM 125 O O4 . DM3 B 2 . ? 8.168 17.010 33.262 1.00 14.79 ? 7 DM3 A O4 1
HETATM 126 C C5 . DM3 B 2 . ? 9.732 18.817 33.650 1.00 11.67 ? 7 DM3 A C5 1
HETATM 127 C C6 . DM3 B 2 . ? 10.789 17.952 33.814 1.00 10.41 ? 7 DM3 A C6 1
HETATM 128 O O6 . DM3 B 2 . ? 10.476 16.610 33.732 1.00 12.97 ? 7 DM3 A O6 1
HETATM 129 C C7 . DM3 B 2 . ? 12.086 18.417 34.093 1.00 10.93 ? 7 DM3 A C7 1
HETATM 130 C C8 . DM3 B 2 . ? 13.168 17.576 34.266 1.00 11.28 ? 7 DM3 A C8 1
HETATM 131 O O8 . DM3 B 2 . ? 13.135 16.191 34.194 1.00 13.49 ? 7 DM3 A O8 1
HETATM 132 C C9 . DM3 B 2 . ? 14.425 18.170 34.564 1.00 12.75 ? 7 DM3 A C9 1
HETATM 133 C C10 . DM3 B 2 . ? 15.523 17.148 34.725 1.00 14.88 ? 7 DM3 A C10 1
HETATM 134 O O10 . DM3 B 2 . ? 15.669 16.622 33.324 1.00 18.13 ? 7 DM3 A O10 1
HETATM 135 C C11 . DM3 B 2 . ? 16.792 17.814 35.233 1.00 15.29 ? 7 DM3 A C11 1
HETATM 136 C C12 . DM3 B 2 . ? 17.075 19.194 34.766 1.00 15.39 ? 7 DM3 A C12 1
HETATM 137 O O12 . DM3 B 2 . ? 17.326 19.016 33.273 1.00 16.87 ? 7 DM3 A O12 1
HETATM 138 C C13 . DM3 B 2 . ? 18.423 19.836 35.155 1.00 17.56 ? 7 DM3 A C13 1
HETATM 139 O O13 . DM3 B 2 . ? 18.298 20.856 36.045 1.00 20.08 ? 7 DM3 A O13 1
HETATM 140 C C14 . DM3 B 2 . ? 19.687 19.455 34.442 1.00 17.70 ? 7 DM3 A C14 1
HETATM 141 C C15 . DM3 B 2 . ? 15.960 20.185 34.958 1.00 13.38 ? 7 DM3 A C15 1
HETATM 142 C C16 . DM3 B 2 . ? 14.649 19.518 34.659 1.00 11.65 ? 7 DM3 A C16 1
HETATM 143 C C17 . DM3 B 2 . ? 13.571 20.381 34.452 1.00 11.16 ? 7 DM3 A C17 1
HETATM 144 C C18 . DM3 B 2 . ? 12.340 19.745 34.167 1.00 10.36 ? 7 DM3 A C18 1
HETATM 145 C C19 . DM3 B 2 . ? 11.275 20.644 33.981 1.00 11.06 ? 7 DM3 A C19 1
HETATM 146 O O19 . DM3 B 2 . ? 11.439 21.952 34.014 1.00 12.68 ? 7 DM3 A O19 1
HETATM 147 C C20 . DM3 B 2 . ? 9.997 20.141 33.720 1.00 10.99 ? 7 DM3 A C20 1
HETATM 148 C C21 . DM3 B 2 . ? 6.809 16.663 32.939 1.00 14.75 ? 7 DM3 A C21 1
HETATM 149 C "C1'" . DM3 B 2 . ? 16.091 15.299 33.003 1.00 18.97 ? 7 DM3 A "C1'" 1
HETATM 150 C "C2'" . DM3 B 2 . ? 15.820 14.997 31.529 1.00 19.58 ? 7 DM3 A "C2'" 1
HETATM 151 C "C3'" . DM3 B 2 . ? 16.874 15.676 30.696 1.00 19.93 ? 7 DM3 A "C3'" 1
HETATM 152 N "N3'" . DM3 B 2 . ? 16.658 15.042 29.333 1.00 19.92 ? 7 DM3 A "N3'" 1
HETATM 153 C "C4'" . DM3 B 2 . ? 18.372 15.415 31.105 1.00 19.92 ? 7 DM3 A "C4'" 1
HETATM 154 O "O4'" . DM3 B 2 . ? 18.616 14.002 30.939 1.00 20.02 ? 7 DM3 A "O4'" 1
HETATM 155 C "C5'" . DM3 B 2 . ? 18.532 15.801 32.566 1.00 20.17 ? 7 DM3 A "C5'" 1
HETATM 156 O "O5'" . DM3 B 2 . ? 17.478 15.017 33.332 1.00 20.42 ? 7 DM3 A "O5'" 1
HETATM 157 C "C6'" . DM3 B 2 . ? 19.918 15.575 33.133 1.00 19.99 ? 7 DM3 A "C6'" 1
HETATM 158 O O . HOH C 3 . ? 14.838 10.973 30.630 1.00 44.06 ? 8 HOH A O 1
HETATM 159 O O . HOH C 3 . ? 20.454 15.796 12.761 1.00 42.65 ? 9 HOH A O 1
HETATM 160 O O . HOH C 3 . ? 3.142 21.278 22.835 1.00 32.98 ? 10 HOH A O 1
HETATM 161 O O . HOH C 3 . ? 15.887 27.349 32.565 1.00 36.41 ? 11 HOH A O 1
HETATM 162 O O . HOH C 3 . ? 8.543 15.176 35.451 1.00 25.93 ? 12 HOH A O 1
HETATM 163 O O . HOH C 3 . ? 16.897 21.517 38.646 1.00 32.57 ? 13 HOH A O 1
HETATM 164 O O . HOH C 3 . ? 7.246 17.224 36.889 1.00 33.00 ? 14 HOH A O 1
HETATM 165 O O . HOH C 3 . ? 18.354 14.432 36.235 1.00 33.48 ? 15 HOH A O 1
HETATM 166 O O . HOH C 3 . ? 8.719 24.891 34.075 1.00 63.61 ? 16 HOH A O 1
HETATM 167 O O . HOH C 3 . ? 16.862 12.582 29.040 1.00 40.10 ? 17 HOH A O 1
HETATM 168 O O . HOH C 3 . ? 22.751 17.785 36.048 1.00 37.06 ? 18 HOH A O 1
HETATM 169 O O . HOH C 3 . ? 21.006 13.727 21.782 1.00 25.18 ? 19 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 18.042 22.155 41.792 1.00 55.71 ? 20 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 10.145 23.553 30.414 1.00 49.74 ? 21 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 20.248 7.416 29.153 1.00 40.63 ? 22 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 6.736 23.042 24.743 1.00 39.29 ? 23 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 1.857 21.510 25.847 1.00 34.92 ? 24 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 12.403 26.241 31.165 1.00 56.87 ? 25 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 21.209 12.972 30.133 1.00 35.55 ? 26 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 6.856 28.988 24.896 1.00 56.55 ? 27 HOH A O 1
HETATM 178 O O . HOH C 3 . ? 17.240 11.334 32.922 1.00 49.97 ? 28 HOH A O 1
HETATM 179 O O . HOH C 3 . ? 14.197 14.574 28.524 1.00 29.05 ? 29 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 18.089 10.579 28.702 1.00 51.39 ? 30 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 13.986 24.218 27.734 1.00 30.91 ? 31 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 10.544 24.022 27.196 1.00 51.49 ? 32 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 13.571 28.187 40.121 1.00 58.11 ? 33 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 22.180 28.918 31.754 1.00 57.44 ? 34 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 21.091 20.390 37.996 1.00 49.15 ? 35 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 3.318 12.223 19.392 1.00 38.96 ? 36 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 19.613 29.929 34.392 1.00 56.57 ? 37 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 17.571 7.946 29.361 1.00 48.39 ? 38 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 4.673 14.034 33.956 1.00 57.83 ? 39 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 15.220 29.155 26.845 1.00 47.49 ? 40 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 6.816 12.305 38.207 1.00 54.63 ? 41 HOH A O 1
HETATM 192 O O . HOH C 3 . ? 3.749 7.613 25.124 1.00 55.61 ? 42 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 23.479 19.807 26.904 1.00 50.16 ? 43 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 22.922 17.832 26.103 0.50 36.43 ? 44 HOH A O 1
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