data_151D
#
_entry.id 151D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 151D pdb_0000151d 10.2210/pdb151d/pdb
RCSB DDF044 ? ?
WWPDB D_1000170118 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1994-05-04
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 151D
_pdbx_database_status.recvd_initial_deposition_date 1993-12-13
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Lipscomb, L.A.' 1
'Peek, M.E.' 2
'Zhou, F.X.' 3
'Bertrand, J.A.' 4
'VanDerveer, D.' 5
'Williams, L.D.' 6
#
_citation.id primary
_citation.title
'Water ring structure at DNA interfaces: hydration and dynamics of DNA-anthracycline complexes.'
_citation.journal_abbrev Biochemistry
_citation.journal_volume 33
_citation.page_first 3649
_citation.page_last 3659
_citation.year 1994
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 8142363
_citation.pdbx_database_id_DOI 10.1021/bi00178a023
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Lipscomb, L.A.' 1 ?
primary 'Peek, M.E.' 2 ?
primary 'Zhou, F.X.' 3 ?
primary 'Bertrand, J.A.' 4 ?
primary 'VanDerveer, D.' 5 ?
primary 'Williams, L.D.' 6 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn DOXORUBICIN 543.519 1 ? ? ? ?
3 water nat water 18.015 62 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGATCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 DOXORUBICIN DM2
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DM2 non-polymer . DOXORUBICIN ADRIAMYCIN 'C27 H29 N O11' 543.519
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM2 1 7 7 DM2 DM2 A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
C 3 HOH 34 41 41 HOH HOH A .
C 3 HOH 35 42 42 HOH HOH A .
C 3 HOH 36 43 43 HOH HOH A .
C 3 HOH 37 44 44 HOH HOH A .
C 3 HOH 38 45 45 HOH HOH A .
C 3 HOH 39 46 46 HOH HOH A .
C 3 HOH 40 47 47 HOH HOH A .
C 3 HOH 41 48 48 HOH HOH A .
C 3 HOH 42 49 49 HOH HOH A .
C 3 HOH 43 50 50 HOH HOH A .
C 3 HOH 44 51 51 HOH HOH A .
C 3 HOH 45 52 52 HOH HOH A .
C 3 HOH 46 53 53 HOH HOH A .
C 3 HOH 47 54 54 HOH HOH A .
C 3 HOH 48 55 55 HOH HOH A .
C 3 HOH 49 56 56 HOH HOH A .
C 3 HOH 50 57 57 HOH HOH A .
C 3 HOH 51 58 58 HOH HOH A .
C 3 HOH 52 59 59 HOH HOH A .
C 3 HOH 53 60 60 HOH HOH A .
C 3 HOH 54 61 61 HOH HOH A .
C 3 HOH 55 62 62 HOH HOH A .
C 3 HOH 56 63 63 HOH HOH A .
C 3 HOH 57 64 64 HOH HOH A .
C 3 HOH 58 65 65 HOH HOH A .
C 3 HOH 59 66 66 HOH HOH A .
C 3 HOH 60 67 67 HOH HOH A .
C 3 HOH 61 68 68 HOH HOH A .
C 3 HOH 62 69 69 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 151D
_cell.length_a 27.920
_cell.length_b 27.920
_cell.length_c 52.390
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 151D
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 151D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.82
_exptl_crystal.density_percent_sol 56.41
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.50
_exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 MGCL2 ? ? ?
1 5 1 SPERMINE_HCL ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 113.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'AREA DETECTOR'
_diffrn_detector.type SDMS
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 151D
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F 1.000
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.400
_reflns.number_obs 3402
_reflns.number_all 17251
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 151D
_refine.ls_number_reflns_obs 3402
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.400
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.2000000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 39
_refine_hist.number_atoms_solvent 62
_refine_hist.number_atoms_total 221
_refine_hist.d_res_high 1.400
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 151D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 151D
_struct.title
'DIVERSITY OF WATER RING SIZE AT DNA INTERFACES: HYDRATION AND DYNAMICS OF DNA-ANTHRACYCLINE COMPLEXES'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 151D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 151D
_struct_ref.pdbx_db_accession 151D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 151D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 151D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 27.9200000000 -1.0000000000
0.0000000000 0.0000000000 27.9200000000 0.0000000000 0.0000000000 -1.0000000000 26.1950000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DM2 7 ? 14 'BINDING SITE FOR RESIDUE DM2 A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 14 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 14 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 14 DA A 3 ? DA A 3 . ? 8_665 ?
4 AC1 14 DT A 4 ? DT A 4 . ? 1_555 ?
5 AC1 14 DC A 5 ? DC A 5 . ? 1_555 ?
6 AC1 14 DG A 6 ? DG A 6 . ? 1_555 ?
7 AC1 14 HOH C . ? HOH A 8 . ? 8_665 ?
8 AC1 14 HOH C . ? HOH A 9 . ? 1_555 ?
9 AC1 14 HOH C . ? HOH A 12 . ? 1_555 ?
10 AC1 14 HOH C . ? HOH A 16 . ? 1_555 ?
11 AC1 14 HOH C . ? HOH A 17 . ? 8_665 ?
12 AC1 14 HOH C . ? HOH A 42 . ? 8_665 ?
13 AC1 14 HOH C . ? HOH A 44 . ? 1_555 ?
14 AC1 14 HOH C . ? HOH A 46 . ? 1_555 ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 HOH
_pdbx_validate_close_contact.auth_seq_id_1 28
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 53
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.01
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.609 1.519 0.090 0.010 N
2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.385 1.335 0.050 0.007 N
3 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.672 1.593 0.079 0.010 N
4 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.581 1.519 0.062 0.010 N
5 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.340 1.391 -0.051 0.007 N
6 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.323 1.374 -0.051 0.007 N
7 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.253 1.341 -0.088 0.010 N
8 1 "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 1.558 1.512 0.046 0.007 N
9 1 "C2'" A DA 3 ? ? "C1'" A DA 3 ? ? 1.612 1.519 0.093 0.010 N
10 1 "O3'" A DA 3 ? ? "C3'" A DA 3 ? ? 1.383 1.419 -0.036 0.006 N
11 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.659 1.593 0.066 0.010 N
12 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.617 1.519 0.098 0.010 N
13 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.379 1.335 0.044 0.007 N
14 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.487 1.420 0.067 0.011 N
15 1 N1 A DG 6 ? ? C2 A DG 6 ? ? 1.322 1.373 -0.051 0.008 N
16 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.332 1.391 -0.059 0.007 N
17 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.324 1.374 -0.050 0.007 N
18 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.244 1.341 -0.097 0.010 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 97.16 102.40 -5.24 0.80 N
2 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 125.10 119.90 5.20 0.50 N
3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.60 121.90 -5.30 0.40 N
4 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.30 118.90 4.40 0.60 N
5 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.59 120.20 4.39 0.70 N
6 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 99.56 105.70 -6.14 0.90 N
7 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.54 108.30 4.24 0.30 N
8 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 119.08 125.10 -6.02 0.60 N
9 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 129.27 123.90 5.37 0.60 N
10 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 117.74 111.50 6.24 0.50 N
11 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 110.20 119.90 -9.70 0.70 N
12 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.32 128.60 -4.28 0.60 N
13 1 "O5'" A DA 3 ? ? "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 101.12 109.40 -8.28 0.80 N
14 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DT 4 ? ? 126.94 119.70 7.24 1.20 Y
15 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 104.43 109.40 -4.97 0.80 N
16 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 103.60 108.00 -4.40 0.70 N
17 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 131.19 119.60 11.59 1.50 N
18 1 "O5'" A DC 5 ? ? P A DC 5 ? ? OP1 A DC 5 ? ? 97.43 105.70 -8.27 0.90 N
19 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.68 109.40 -6.72 0.80 N
20 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 95.73 102.40 -6.67 0.80 N
21 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.81 108.30 7.51 0.30 N
22 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 123.75 119.90 3.85 0.50 N
23 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 118.11 121.90 -3.79 0.40 N
24 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 124.67 118.90 5.77 0.60 N
25 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 120.70 125.10 -4.40 0.60 N
26 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 128.13 123.90 4.23 0.60 N
27 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 116.89 111.50 5.39 0.50 N
28 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 122.10 116.20 5.90 0.90 N
29 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 109.73 119.90 -10.17 0.70 N
30 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.79 128.60 -4.81 0.60 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DM2 C1 C Y N 108
DM2 C2 C Y N 109
DM2 C3 C Y N 110
DM2 C4 C Y N 111
DM2 O4 O N N 112
DM2 C5 C Y N 113
DM2 C6 C N N 114
DM2 O6 O N N 115
DM2 C7 C Y N 116
DM2 C8 C Y N 117
DM2 O8 O N N 118
DM2 C9 C Y N 119
DM2 C10 C N S 120
DM2 O10 O N N 121
DM2 C11 C N N 122
DM2 C12 C N S 123
DM2 O12 O N N 124
DM2 C13 C N N 125
DM2 O13 O N N 126
DM2 C14 C N N 127
DM2 O14 O N N 128
DM2 C15 C N N 129
DM2 C16 C Y N 130
DM2 C17 C Y N 131
DM2 O17 O N N 132
DM2 C18 C Y N 133
DM2 C19 C N N 134
DM2 O19 O N N 135
DM2 C20 C Y N 136
DM2 C21 C N N 137
DM2 "C1'" C N R 138
DM2 "C2'" C N N 139
DM2 "C3'" C N S 140
DM2 "N3'" N N N 141
DM2 "C4'" C N S 142
DM2 "O4'" O N N 143
DM2 "C5'" C N S 144
DM2 "O5'" O N N 145
DM2 "C6'" C N N 146
DM2 H1 H N N 147
DM2 H2 H N N 148
DM2 H3 H N N 149
DM2 HO8 H N N 150
DM2 H10 H N N 151
DM2 H111 H N N 152
DM2 H112 H N N 153
DM2 HO12 H N N 154
DM2 H141 H N N 155
DM2 H142 H N N 156
DM2 HO14 H N N 157
DM2 H151 H N N 158
DM2 H152 H N N 159
DM2 HO17 H N N 160
DM2 H211 H N N 161
DM2 H212 H N N 162
DM2 H213 H N N 163
DM2 "H1'" H N N 164
DM2 "H2'1" H N N 165
DM2 "H2'2" H N N 166
DM2 "H3'" H N N 167
DM2 "HN'1" H N N 168
DM2 "HN'2" H N N 169
DM2 "H4'" H N N 170
DM2 "HO4'" H N N 171
DM2 "H5'" H N N 172
DM2 "H6'1" H N N 173
DM2 "H6'2" H N N 174
DM2 "H6'3" H N N 175
DT OP3 O N N 176
DT P P N N 177
DT OP1 O N N 178
DT OP2 O N N 179
DT "O5'" O N N 180
DT "C5'" C N N 181
DT "C4'" C N R 182
DT "O4'" O N N 183
DT "C3'" C N S 184
DT "O3'" O N N 185
DT "C2'" C N N 186
DT "C1'" C N R 187
DT N1 N N N 188
DT C2 C N N 189
DT O2 O N N 190
DT N3 N N N 191
DT C4 C N N 192
DT O4 O N N 193
DT C5 C N N 194
DT C7 C N N 195
DT C6 C N N 196
DT HOP3 H N N 197
DT HOP2 H N N 198
DT "H5'" H N N 199
DT "H5''" H N N 200
DT "H4'" H N N 201
DT "H3'" H N N 202
DT "HO3'" H N N 203
DT "H2'" H N N 204
DT "H2''" H N N 205
DT "H1'" H N N 206
DT H3 H N N 207
DT H71 H N N 208
DT H72 H N N 209
DT H73 H N N 210
DT H6 H N N 211
HOH O O N N 212
HOH H1 H N N 213
HOH H2 H N N 214
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DM2 C1 C2 doub Y N 113
DM2 C1 C20 sing Y N 114
DM2 C1 H1 sing N N 115
DM2 C2 C3 sing Y N 116
DM2 C2 H2 sing N N 117
DM2 C3 C4 doub Y N 118
DM2 C3 H3 sing N N 119
DM2 C4 O4 sing N N 120
DM2 C4 C5 sing Y N 121
DM2 O4 C21 sing N N 122
DM2 C5 C6 sing N N 123
DM2 C5 C20 doub Y N 124
DM2 C6 O6 doub N N 125
DM2 C6 C7 sing N N 126
DM2 C7 C8 doub Y N 127
DM2 C7 C18 sing Y N 128
DM2 C8 O8 sing N N 129
DM2 C8 C9 sing Y N 130
DM2 O8 HO8 sing N N 131
DM2 C9 C10 sing N N 132
DM2 C9 C16 doub Y N 133
DM2 C10 O10 sing N N 134
DM2 C10 C11 sing N N 135
DM2 C10 H10 sing N N 136
DM2 O10 "C1'" sing N N 137
DM2 C11 C12 sing N N 138
DM2 C11 H111 sing N N 139
DM2 C11 H112 sing N N 140
DM2 C12 O12 sing N N 141
DM2 C12 C13 sing N N 142
DM2 C12 C15 sing N N 143
DM2 O12 HO12 sing N N 144
DM2 C13 O13 doub N N 145
DM2 C13 C14 sing N N 146
DM2 C14 O14 sing N N 147
DM2 C14 H141 sing N N 148
DM2 C14 H142 sing N N 149
DM2 O14 HO14 sing N N 150
DM2 C15 C16 sing N N 151
DM2 C15 H151 sing N N 152
DM2 C15 H152 sing N N 153
DM2 C16 C17 sing Y N 154
DM2 C17 O17 sing N N 155
DM2 C17 C18 doub Y N 156
DM2 O17 HO17 sing N N 157
DM2 C18 C19 sing N N 158
DM2 C19 O19 doub N N 159
DM2 C19 C20 sing N N 160
DM2 C21 H211 sing N N 161
DM2 C21 H212 sing N N 162
DM2 C21 H213 sing N N 163
DM2 "C1'" "C2'" sing N N 164
DM2 "C1'" "O5'" sing N N 165
DM2 "C1'" "H1'" sing N N 166
DM2 "C2'" "C3'" sing N N 167
DM2 "C2'" "H2'1" sing N N 168
DM2 "C2'" "H2'2" sing N N 169
DM2 "C3'" "N3'" sing N N 170
DM2 "C3'" "C4'" sing N N 171
DM2 "C3'" "H3'" sing N N 172
DM2 "N3'" "HN'1" sing N N 173
DM2 "N3'" "HN'2" sing N N 174
DM2 "C4'" "O4'" sing N N 175
DM2 "C4'" "C5'" sing N N 176
DM2 "C4'" "H4'" sing N N 177
DM2 "O4'" "HO4'" sing N N 178
DM2 "C5'" "O5'" sing N N 179
DM2 "C5'" "C6'" sing N N 180
DM2 "C5'" "H5'" sing N N 181
DM2 "C6'" "H6'1" sing N N 182
DM2 "C6'" "H6'2" sing N N 183
DM2 "C6'" "H6'3" sing N N 184
DT OP3 P sing N N 185
DT OP3 HOP3 sing N N 186
DT P OP1 doub N N 187
DT P OP2 sing N N 188
DT P "O5'" sing N N 189
DT OP2 HOP2 sing N N 190
DT "O5'" "C5'" sing N N 191
DT "C5'" "C4'" sing N N 192
DT "C5'" "H5'" sing N N 193
DT "C5'" "H5''" sing N N 194
DT "C4'" "O4'" sing N N 195
DT "C4'" "C3'" sing N N 196
DT "C4'" "H4'" sing N N 197
DT "O4'" "C1'" sing N N 198
DT "C3'" "O3'" sing N N 199
DT "C3'" "C2'" sing N N 200
DT "C3'" "H3'" sing N N 201
DT "O3'" "HO3'" sing N N 202
DT "C2'" "C1'" sing N N 203
DT "C2'" "H2'" sing N N 204
DT "C2'" "H2''" sing N N 205
DT "C1'" N1 sing N N 206
DT "C1'" "H1'" sing N N 207
DT N1 C2 sing N N 208
DT N1 C6 sing N N 209
DT C2 O2 doub N N 210
DT C2 N3 sing N N 211
DT N3 C4 sing N N 212
DT N3 H3 sing N N 213
DT C4 O4 doub N N 214
DT C4 C5 sing N N 215
DT C5 C7 sing N N 216
DT C5 C6 doub N N 217
DT C7 H71 sing N N 218
DT C7 H72 sing N N 219
DT C7 H73 sing N N 220
DT C6 H6 sing N N 221
HOH O H1 sing N N 222
HOH O H2 sing N N 223
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
151D 'double helix'
151D 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.156 -0.113 -0.099 7.580 2.433 -0.114 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 -0.156 -0.050 -0.524 -20.023 1.373 1.088 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DA 3 1_555 A DT 4 8_665 0.093 -0.153 0.287 -7.951 -2.924 1.736 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1
1 A DT 4 1_555 A DA 3 8_665 -0.093 -0.153 0.287 7.951 -2.924 1.736 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_665 0.156 -0.050 -0.524 20.023 1.373 1.088 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.156 -0.113 -0.099 -7.580 2.433 -0.114 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.337 1.259 7.042 3.089 -1.586 35.599 2.544 -1.216 7.068 -2.586 -5.038
35.762 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.386 0.443 3.018 -8.727 -0.324 31.287 0.849 0.978 3.271 -0.586 15.800
32.453 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.843 3.108 0.000 2.192 30.732 -1.988 0.000 3.042 4.129 0.000
30.808 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 1.386 0.443 3.018 8.727 -0.324 31.287 0.849 -0.978 3.271 -0.586 -15.800
32.453 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.337 1.259 7.042 -3.089 -1.586 35.599 2.544 1.216 7.068 -2.586 5.037
35.762 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 151D
_atom_sites.fract_transf_matrix[1][1] 0.035817
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035817
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.019088
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.444 20.142 22.517 1.00 7.86 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.696 21.103 23.447 1.00 6.24 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.109 21.147 23.902 1.00 5.98 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.398 19.999 24.776 1.00 6.14 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 12.190 21.053 22.781 1.00 6.53 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.304 21.804 23.120 1.00 6.29 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.450 19.507 22.648 1.00 6.31 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.440 19.166 24.220 1.00 5.93 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 11.971 17.750 24.325 1.00 5.05 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 12.957 16.790 24.449 1.00 4.84 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.140 17.052 24.488 1.00 5.09 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.520 15.485 24.508 1.00 5.54 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.194 15.087 24.476 1.00 5.26 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 10.908 13.773 24.568 1.00 4.81 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.225 16.116 24.374 1.00 5.30 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.641 17.366 24.237 1.00 5.05 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.860 22.959 22.173 1.00 7.99 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.897 23.708 22.889 1.00 8.14 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.747 23.562 21.529 1.00 7.35 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.547 22.176 20.865 1.00 7.32 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 15.677 21.413 21.231 1.00 7.48 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.063 20.593 20.008 1.00 7.87 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.152 19.464 19.933 1.00 7.43 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 15.946 21.325 18.648 1.00 8.55 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 17.065 20.963 17.885 1.00 10.90 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 14.676 20.755 18.021 1.00 7.93 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 14.770 19.277 18.574 1.00 7.17 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 13.586 18.507 18.443 1.00 6.69 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.311 18.858 18.409 1.00 6.57 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.464 17.849 18.236 1.00 6.58 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.306 16.776 18.148 1.00 6.17 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.039 15.389 17.979 1.00 6.35 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 10.879 14.894 17.863 1.00 6.06 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.085 14.552 17.946 1.00 5.56 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.327 15.053 18.066 1.00 5.57 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.321 14.290 18.082 1.00 5.23 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 14.714 16.317 18.242 1.00 6.00 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 13.611 17.120 18.286 1.00 6.01 ? 2 DG A C4 1
ATOM 39 P P . DA A 1 3 ? 17.896 21.927 16.925 1.00 12.21 ? 3 DA A P 1
ATOM 40 O OP1 . DA A 1 3 ? 18.567 22.792 17.789 1.00 11.83 ? 3 DA A OP1 1
ATOM 41 O OP2 . DA A 1 3 ? 16.999 22.461 15.891 1.00 12.58 ? 3 DA A OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? 19.080 20.969 16.322 1.00 10.19 ? 3 DA A "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? 19.838 20.347 17.375 1.00 8.81 ? 3 DA A "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? 20.147 18.957 16.742 1.00 8.04 ? 3 DA A "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? 18.959 18.144 16.913 1.00 7.20 ? 3 DA A "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? 20.529 18.871 15.228 1.00 8.33 ? 3 DA A "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? 21.677 18.106 15.131 1.00 8.48 ? 3 DA A "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? 19.367 18.180 14.569 1.00 7.64 ? 3 DA A "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? 18.744 17.332 15.790 1.00 6.79 ? 3 DA A "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? 17.332 17.232 15.590 1.00 5.78 ? 3 DA A N9 1
ATOM 51 C C8 . DA A 1 3 ? 16.427 18.210 15.549 1.00 5.30 ? 3 DA A C8 1
ATOM 52 N N7 . DA A 1 3 ? 15.209 17.805 15.244 1.00 5.42 ? 3 DA A N7 1
ATOM 53 C C5 . DA A 1 3 ? 15.354 16.449 15.139 1.00 4.78 ? 3 DA A C5 1
ATOM 54 C C6 . DA A 1 3 ? 14.384 15.426 14.816 1.00 4.53 ? 3 DA A C6 1
ATOM 55 N N6 . DA A 1 3 ? 13.087 15.683 14.634 1.00 4.16 ? 3 DA A N6 1
ATOM 56 N N1 . DA A 1 3 ? 14.870 14.175 14.690 1.00 4.88 ? 3 DA A N1 1
ATOM 57 C C2 . DA A 1 3 ? 16.169 13.927 14.903 1.00 4.83 ? 3 DA A C2 1
ATOM 58 N N3 . DA A 1 3 ? 17.144 14.807 15.185 1.00 5.02 ? 3 DA A N3 1
ATOM 59 C C4 . DA A 1 3 ? 16.645 16.052 15.283 1.00 5.07 ? 3 DA A C4 1
ATOM 60 P P . DT A 1 4 ? 22.538 17.847 13.833 1.00 9.53 ? 4 DT A P 1
ATOM 61 O OP1 . DT A 1 4 ? 23.810 17.466 14.339 1.00 9.39 ? 4 DT A OP1 1
ATOM 62 O OP2 . DT A 1 4 ? 22.344 18.920 12.918 1.00 10.29 ? 4 DT A OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? 22.011 16.456 13.114 1.00 8.16 ? 4 DT A "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? 22.298 15.261 13.739 1.00 7.70 ? 4 DT A "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? 21.642 14.202 12.855 1.00 7.46 ? 4 DT A "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? 20.212 14.313 12.894 1.00 8.24 ? 4 DT A "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? 22.036 14.315 11.328 1.00 7.47 ? 4 DT A "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? 22.588 13.047 11.099 1.00 8.72 ? 4 DT A "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? 20.721 14.525 10.603 1.00 6.79 ? 4 DT A "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? 19.676 14.049 11.592 1.00 6.89 ? 4 DT A "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? 18.368 14.803 11.587 1.00 7.48 ? 4 DT A N1 1
ATOM 72 C C2 . DT A 1 4 ? 17.242 14.014 11.518 1.00 6.68 ? 4 DT A C2 1
ATOM 73 O O2 . DT A 1 4 ? 17.295 12.806 11.446 1.00 7.19 ? 4 DT A O2 1
ATOM 74 N N3 . DT A 1 4 ? 16.036 14.647 11.494 1.00 6.72 ? 4 DT A N3 1
ATOM 75 C C4 . DT A 1 4 ? 15.867 16.027 11.570 1.00 7.03 ? 4 DT A C4 1
ATOM 76 O O4 . DT A 1 4 ? 14.710 16.489 11.589 1.00 6.61 ? 4 DT A O4 1
ATOM 77 C C5 . DT A 1 4 ? 17.058 16.802 11.666 1.00 7.23 ? 4 DT A C5 1
ATOM 78 C C7 . DT A 1 4 ? 17.009 18.300 11.780 1.00 9.27 ? 4 DT A C7 1
ATOM 79 C C6 . DT A 1 4 ? 18.229 16.173 11.699 1.00 6.96 ? 4 DT A C6 1
ATOM 80 P P . DC A 1 5 ? 23.474 12.809 9.782 1.00 9.64 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 24.064 11.543 10.009 1.00 11.07 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 24.043 14.047 9.445 1.00 10.32 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 22.346 12.323 8.667 1.00 9.12 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 21.640 11.214 8.928 1.00 8.39 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 20.480 11.301 7.906 1.00 9.18 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 19.445 12.190 8.427 1.00 8.39 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 20.847 11.797 6.502 1.00 9.33 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 20.179 10.920 5.644 1.00 10.65 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 20.317 13.230 6.419 1.00 9.04 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 19.036 12.984 7.374 1.00 8.15 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 18.322 14.263 7.752 1.00 7.43 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 16.994 14.063 8.051 1.00 7.31 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 16.459 12.976 8.125 1.00 7.35 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 16.255 15.188 8.321 1.00 7.05 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 16.778 16.464 8.331 1.00 6.93 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 15.947 17.498 8.565 1.00 6.28 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 18.160 16.629 7.998 1.00 7.05 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 18.874 15.527 7.751 1.00 7.15 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 20.949 9.831 4.728 1.00 10.89 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 21.431 8.869 5.654 1.00 10.22 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 21.785 10.637 3.840 1.00 9.97 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 19.761 9.015 4.012 1.00 8.85 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 18.916 8.110 4.627 1.00 8.16 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 17.899 7.630 3.581 1.00 8.25 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 17.011 8.666 3.128 1.00 7.74 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 18.576 7.118 2.240 1.00 7.25 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 17.762 6.047 1.899 1.00 7.43 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 18.514 8.311 1.296 1.00 7.09 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 17.207 9.030 1.700 1.00 6.56 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 17.297 10.472 1.673 1.00 6.36 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 18.358 11.261 1.733 1.00 6.07 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 18.066 12.557 1.711 1.00 6.63 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 16.707 12.568 1.650 1.00 5.88 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 15.751 13.648 1.606 1.00 6.06 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 16.072 14.876 1.619 1.00 5.56 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 14.463 13.311 1.557 1.00 5.52 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.099 12.041 1.504 1.00 5.42 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 12.904 11.697 1.461 1.00 5.55 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 14.886 10.948 1.536 1.00 5.36 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 16.185 11.309 1.603 1.00 5.66 ? 6 DG A C4 1
HETATM 121 C C1 . DM2 B 2 . ? 15.226 18.450 4.896 1.00 7.41 ? 7 DM2 A C1 1
HETATM 122 C C2 . DM2 B 2 . ? 16.429 19.161 4.909 1.00 6.75 ? 7 DM2 A C2 1
HETATM 123 C C3 . DM2 B 2 . ? 17.654 18.469 4.880 1.00 7.59 ? 7 DM2 A C3 1
HETATM 124 C C4 . DM2 B 2 . ? 17.677 17.063 4.829 1.00 6.83 ? 7 DM2 A C4 1
HETATM 125 O O4 . DM2 B 2 . ? 18.898 16.388 4.808 1.00 7.14 ? 7 DM2 A O4 1
HETATM 126 C C5 . DM2 B 2 . ? 16.456 16.353 4.816 1.00 6.85 ? 7 DM2 A C5 1
HETATM 127 C C6 . DM2 B 2 . ? 16.409 14.946 4.803 1.00 6.71 ? 7 DM2 A C6 1
HETATM 128 O O6 . DM2 B 2 . ? 17.561 14.211 4.771 1.00 6.75 ? 7 DM2 A O6 1
HETATM 129 C C7 . DM2 B 2 . ? 15.196 14.209 4.817 1.00 6.33 ? 7 DM2 A C7 1
HETATM 130 C C8 . DM2 B 2 . ? 15.164 12.808 4.784 1.00 6.14 ? 7 DM2 A C8 1
HETATM 131 O O8 . DM2 B 2 . ? 16.295 12.032 4.788 1.00 4.89 ? 7 DM2 A O8 1
HETATM 132 C C9 . DM2 B 2 . ? 13.929 12.131 4.758 1.00 5.85 ? 7 DM2 A C9 1
HETATM 133 C C10 . DM2 B 2 . ? 13.995 10.639 4.786 1.00 6.85 ? 7 DM2 A C10 1
HETATM 134 O O10 . DM2 B 2 . ? 14.592 10.397 6.123 1.00 5.90 ? 7 DM2 A O10 1
HETATM 135 C C11 . DM2 B 2 . ? 12.711 9.868 4.523 1.00 6.15 ? 7 DM2 A C11 1
HETATM 136 C C12 . DM2 B 2 . ? 11.569 10.600 5.359 1.00 6.95 ? 7 DM2 A C12 1
HETATM 137 O O12 . DM2 B 2 . ? 11.611 10.753 6.835 1.00 6.29 ? 7 DM2 A O12 1
HETATM 138 C C13 . DM2 B 2 . ? 10.269 9.864 5.071 1.00 7.62 ? 7 DM2 A C13 1
HETATM 139 O O13 . DM2 B 2 . ? 9.543 10.187 3.954 1.00 7.69 ? 7 DM2 A O13 1
HETATM 140 C C14 . DM2 B 2 . ? 9.825 8.804 6.033 1.00 8.08 ? 7 DM2 A C14 1
HETATM 141 O O14 . DM2 B 2 . ? 8.617 8.191 5.670 1.00 9.67 ? 7 DM2 A O14 1
HETATM 142 C C15 . DM2 B 2 . ? 11.432 12.065 4.766 1.00 6.40 ? 7 DM2 A C15 1
HETATM 143 C C16 . DM2 B 2 . ? 12.729 12.807 4.799 1.00 6.24 ? 7 DM2 A C16 1
HETATM 144 C C17 . DM2 B 2 . ? 12.761 14.224 4.827 1.00 6.26 ? 7 DM2 A C17 1
HETATM 145 O O17 . DM2 B 2 . ? 11.570 14.889 4.797 1.00 5.50 ? 7 DM2 A O17 1
HETATM 146 C C18 . DM2 B 2 . ? 13.985 14.924 4.822 1.00 6.30 ? 7 DM2 A C18 1
HETATM 147 C C19 . DM2 B 2 . ? 14.007 16.349 4.853 1.00 7.01 ? 7 DM2 A C19 1
HETATM 148 O O19 . DM2 B 2 . ? 12.853 16.988 4.878 1.00 7.56 ? 7 DM2 A O19 1
HETATM 149 C C20 . DM2 B 2 . ? 15.244 17.040 4.865 1.00 6.91 ? 7 DM2 A C20 1
HETATM 150 C C21 . DM2 B 2 . ? 20.164 17.131 4.894 1.00 8.10 ? 7 DM2 A C21 1
HETATM 151 C "C1'" . DM2 B 2 . ? 15.508 9.325 6.325 1.00 6.55 ? 7 DM2 A "C1'" 1
HETATM 152 C "C2'" . DM2 B 2 . ? 16.662 9.744 7.308 1.00 6.83 ? 7 DM2 A "C2'" 1
HETATM 153 C "C3'" . DM2 B 2 . ? 15.986 9.896 8.700 1.00 7.98 ? 7 DM2 A "C3'" 1
HETATM 154 N "N3'" . DM2 B 2 . ? 17.069 10.218 9.702 1.00 6.98 ? 7 DM2 A "N3'" 1
HETATM 155 C "C4'" . DM2 B 2 . ? 15.236 8.613 9.132 1.00 8.50 ? 7 DM2 A "C4'" 1
HETATM 156 O "O4'" . DM2 B 2 . ? 16.324 7.597 9.201 1.00 10.24 ? 7 DM2 A "O4'" 1
HETATM 157 C "C5'" . DM2 B 2 . ? 14.150 8.254 8.082 1.00 8.55 ? 7 DM2 A "C5'" 1
HETATM 158 O "O5'" . DM2 B 2 . ? 14.828 8.116 6.752 1.00 7.51 ? 7 DM2 A "O5'" 1
HETATM 159 C "C6'" . DM2 B 2 . ? 13.470 6.895 8.316 1.00 8.74 ? 7 DM2 A "C6'" 1
HETATM 160 O O . HOH C 3 . ? 18.350 11.311 13.706 1.00 5.07 ? 8 HOH A O 1
HETATM 161 O O . HOH C 3 . ? 8.921 11.914 1.902 1.00 7.24 ? 9 HOH A O 1
HETATM 162 O O . HOH C 3 . ? 11.387 9.066 0.931 1.00 7.88 ? 10 HOH A O 1
HETATM 163 O O . HOH C 3 . ? 13.563 19.064 11.645 1.00 13.16 ? 11 HOH A O 1
HETATM 164 O O . HOH C 3 . ? 19.626 14.456 2.821 1.00 10.45 ? 12 HOH A O 1
HETATM 165 O O . HOH C 3 . ? 13.069 19.453 14.866 1.00 22.11 ? 13 HOH A O 1
HETATM 166 O O . HOH C 3 . ? 17.343 21.235 13.598 1.00 20.09 ? 14 HOH A O 1
HETATM 167 O O . HOH C 3 . ? 13.804 8.183 1.772 1.00 14.66 ? 15 HOH A O 1
HETATM 168 O O . HOH C 3 . ? 11.017 19.219 5.632 1.00 28.40 ? 16 HOH A O 1
HETATM 169 O O . HOH C 3 . ? 19.174 8.363 16.125 1.00 14.09 ? 17 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 21.845 10.079 1.038 1.00 29.10 ? 18 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 16.963 24.984 21.893 1.00 26.65 ? 19 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 14.500 23.881 16.584 1.00 42.46 ? 20 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 11.595 18.805 9.927 1.00 28.63 ? 21 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 16.477 25.104 18.490 1.00 38.30 ? 22 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 13.242 25.798 20.034 1.00 26.65 ? 23 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 24.516 16.920 16.948 1.00 12.90 ? 24 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 25.483 19.727 20.188 1.00 12.22 ? 25 HOH A O 1
HETATM 178 O O . HOH C 3 . ? 23.172 20.414 19.024 1.00 19.90 ? 26 HOH A O 1
HETATM 179 O O . HOH C 3 . ? 24.632 17.790 9.577 1.00 27.74 ? 27 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 24.544 8.753 9.194 1.00 23.26 ? 28 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 7.942 13.554 24.634 1.00 22.92 ? 29 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 23.868 8.738 6.863 1.00 46.84 ? 30 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 11.196 24.017 1.468 1.00 40.81 ? 31 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 21.094 6.842 7.857 1.00 42.40 ? 32 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 24.885 6.208 11.139 1.00 50.53 ? 33 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 22.376 19.200 5.851 1.00 29.56 ? 34 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 16.219 21.828 24.606 1.00 22.81 ? 35 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 26.010 16.035 13.311 1.00 21.30 ? 36 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 22.476 15.671 7.654 1.00 21.35 ? 37 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 10.880 17.920 14.436 1.00 24.58 ? 38 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 25.821 15.621 10.228 1.00 28.89 ? 39 HOH A O 1
HETATM 192 O O . HOH C 3 . ? 16.981 20.076 8.450 1.00 16.44 ? 40 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 21.218 23.563 16.264 1.00 23.34 ? 41 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 19.088 21.877 20.358 1.00 30.00 ? 42 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 21.986 13.254 3.066 1.00 19.95 ? 43 HOH A O 1
HETATM 196 O O . HOH C 3 . ? 14.032 6.299 4.900 1.00 21.53 ? 44 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 17.818 16.842 1.057 1.00 16.97 ? 45 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 17.469 6.334 6.972 1.00 17.26 ? 46 HOH A O 1
HETATM 199 O O . HOH C 3 . ? 26.771 19.780 11.113 1.00 29.39 ? 47 HOH A O 1
HETATM 200 O O . HOH C 3 . ? 14.848 26.399 22.979 1.00 63.23 ? 48 HOH A O 1
HETATM 201 O O . HOH C 3 . ? 20.588 18.616 10.819 1.00 18.65 ? 49 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 23.429 17.834 3.490 1.00 29.81 ? 50 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 24.539 14.246 16.890 1.00 23.80 ? 51 HOH A O 1
HETATM 204 O O . HOH C 3 . ? 26.956 7.946 9.628 1.00 33.88 ? 52 HOH A O 1
HETATM 205 O O . HOH C 3 . ? 23.092 7.438 9.637 1.00 24.94 ? 53 HOH A O 1
HETATM 206 O O . HOH C 3 . ? 21.486 12.217 -0.168 1.00 29.74 ? 54 HOH A O 1
HETATM 207 O O . HOH C 3 . ? 7.162 19.300 9.942 1.00 57.70 ? 55 HOH A O 1
HETATM 208 O O . HOH C 3 . ? 23.442 15.207 4.968 1.00 22.45 ? 56 HOH A O 1
HETATM 209 O O . HOH C 3 . ? 11.543 23.305 16.914 1.00 36.56 ? 57 HOH A O 1
HETATM 210 O O . HOH C 3 . ? 31.348 11.552 19.423 1.00 45.52 ? 58 HOH A O 1
HETATM 211 O O . HOH C 3 . ? 6.293 18.165 13.922 1.00 56.71 ? 59 HOH A O 1
HETATM 212 O O . HOH C 3 . ? 15.932 27.842 6.907 1.00 67.19 ? 60 HOH A O 1
HETATM 213 O O . HOH C 3 . ? 16.649 23.135 27.106 1.00 33.28 ? 61 HOH A O 1
HETATM 214 O O . HOH C 3 . ? 15.903 4.610 5.738 1.00 40.13 ? 62 HOH A O 1
HETATM 215 O O . HOH C 3 . ? 28.182 15.505 10.422 1.00 44.55 ? 63 HOH A O 1
HETATM 216 O O . HOH C 3 . ? 21.938 18.094 8.529 1.00 26.94 ? 64 HOH A O 1
HETATM 217 O O . HOH C 3 . ? 22.560 17.784 18.784 1.00 10.19 ? 65 HOH A O 1
HETATM 218 O O . HOH C 3 . ? 22.296 16.438 21.442 1.00 17.90 ? 66 HOH A O 1
HETATM 219 O O . HOH C 3 . ? 22.726 7.426 1.355 1.00 28.84 ? 67 HOH A O 1
HETATM 220 O O . HOH C 3 . ? 28.085 10.673 11.135 1.00 59.57 ? 68 HOH A O 1
HETATM 221 O O . HOH C 3 . ? 3.842 6.610 25.187 1.00 33.76 ? 69 HOH A O 1
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